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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1403 fasta sequence
[AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAAACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATGTGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGAGTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATCACATCGACTTTGAAAATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACGTTCATGTTCGAAAAAAGTATTTTTATCGTACGTTTCAAAAAACCAAATATGCATCTACATGTGCCTACTTTGCAGCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGGCTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAAAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGTAAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACGAAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAACTAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAAGCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTCATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATATTTAGCAAAATATATACGAGGGAACCTGGTCC]
[+] EMBL BX614823 [AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAAACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATGTGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGAGTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATCACATCGACTTTGAAAATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACG ]
[+] EMBL BX618695 [ CGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAACTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACGTTCATGTTCGAAAAAAGTATTTTTATCGTACGTTTCAAAAAACCAAATATGCATCTACATGTGCCTACTTTGCAGCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGGCTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAAAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCT ]
[+] EMBL BX608533 [ AAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCGTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGTAAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACGAAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAACTAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAAGCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTCATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATATTTAGCAAAATATATACGAGGGAACCTGGTCC]
consensusID : consensus_5234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[GTGATAAGTGGCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTGAGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACACAGCGAAACACAAACAGCATTTTAAGCTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTCGAACTTCTTTAAAAAAATAACTATCACATGTTATGGAAGCAGTATTACCAATGTACAGAAAGTTGTTCGTAGGATGCCCATCGTATCAAGTTCATTGAAGCTTTTCGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTTTAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGNCACAACCTCGCGGCNACGAACT]
[+] EMBL BX619661 [GTGATAAGTGGCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTGAGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACACAGCGAAACACAAACAGCATTTTAAGCTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTCGAACTTCTTTAAAAAAATAACTATCACATGTTATGGAAGCAGTATTACCAATGTACAGAAAGTTGTTCGTAGGATGCCCATCGTATCAAGTTCATTGAAGCTTTTCGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTTTAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGNCACAACCTCGCGGCNACGAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5234#0 AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCA 60
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 TAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAA 120
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 ACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATG 180
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 TGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGA 240
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 GTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATC 300
consensus_5234#1 ----------GTGATAAGTG----GCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTG 46
* * *** * ** ** * * * * ** ** * *
consensus_5234#0 ACATCGACTTTGAA--AATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGG 358
consensus_5234#1 AGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACAC-AGCGAAACACAAACAGCA 105
* * * * ***** * ** ** * * * * ** * * * **
consensus_5234#0 TTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATT 418
consensus_5234#1 TTTTAAG---CTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTC--GAACTT 160
*** *** *** * * * * * *** *** **** ** ** **
consensus_5234#0 GTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAA 478
consensus_5234#1 CTTTAAAAAAATAACTATCACATGTTAT---------GGAAG------CAGTATTACCAA 205
* * **** * ***** ** *** * **** *** **
consensus_5234#0 ATAGCAGAAAACAAACATTTGACGTATGTATGT-GTAT-ACGTTCATGTTCGAAAAAAGT 536
consensus_5234#1 TGTACAGAAAGT---TGTTCGTAGGATGCCCATCGTATCAAGTTCA---TTGAAGCTTTT 259
****** ** * * *** * **** * ***** * *** *
consensus_5234#0 ATTTTTATCGTACGT---TTCAAAAAACCAAATATGCATCTACATGTGCCT-ACTTTGCA 592
consensus_5234#1 CGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTT 319
*** ** * ** ** ****** **** ** ** ** * ******
consensus_5234#0 GCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGG 652
consensus_5234#1 TAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGAT--AATCGG 377
** *** ** * * *** **** ** ** ** ** **
consensus_5234#0 CTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAA 712
consensus_5234#1 -TTAAAGAAGCCATTTTATTTTAAAGAAGATC-----TCATAAACAATCACGCCAACCAT 431
** ** * ** ** * ** ** * ** * ** * * *** **
consensus_5234#0 AAGC-ATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCAT 771
consensus_5234#1 ATGCTGNCACAACCTCGCGGCNACGAACT------------------------------- 460
* ** * * ** * ** *
consensus_5234#0 TATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACC 831
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 GTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCAC 891
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 ACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGT 951
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 AACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTC 1011
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 GCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGT 1071
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 AAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACG 1131
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 AAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAAC 1191
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 TAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAA 1251
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 GCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTC 1311
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 ATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATA 1371
consensus_5234#1 ------------------------------------------------------------
consensus_5234#0 TTTAGCAAAATATATACGAGGGAACCTGGTCC 1403
consensus_5234#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||