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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1027 fasta sequence
[AGCAGATCCCGAGTTATGCAGGATAATAACACCGGACGGNATCTAATCGATCCTTCCATTAGCTCCGATTTCTTCGCGATGCTACGTACGAGCTGTCCGTCATTCTGGGGCAAATGTCCGGCCGATATGGTCGCCACGCTGAAACGGACGCAACTGTATCTTCGACAAAGGCGGCTCATACGGAAGCTGGACAATTTTGGGACCAAGCCACTGCATTCAAAANCAGTGCCCACGGTCTAATTGCCATACGGAACGCGGGTCGTCACTCTCTGTGTTCAACATTCCGACACACCAACGGTACGCATACGCACGATCTTGGCACGAGGAGTACGGGCGCGAATGTGGACATCTTACGCCNAGGGCGAATCTATCGGGCAGGACCGTTATCCCCGAAGCCCGGTCAAGAGGATACACCTTGNACANTGCTTGGAGCAACCGAAGGGTCAGCNTTGCTTTGGCCGACACCGGCGTTACCCGGCAANGGGCACGGTTGCACGCAAAAGCAGTGAATNCGCCGACAGTGGACGACAGCGGCAAGNAAGGACCTACACNGACAAACGGTTGGTTNCCCAAGGTANCGAAATAACCCGGGACCATGGGNATNTANCGTAATTCCCCGTATGTCCCNCACAGAACGTTGNCAGCCAGGGAAGAGNAAACTACGAACAACCCGGANGNGAATTAACTAACNGCACACCCGCAANACGTTTNGTTANACAANCAGCCCGCCAAACAATCAGCGTCGNTTAGGTGGGGCTTCACTGNACAATTCNCACGTCCAAAACGTGTTNNGCAAAACCATTNAAGTCGACAAGTNATTNATAACTATATTAACACAGGGGTTGCTCAAACACCATTACTNGGAAACAANCGGACNNAANNNGCCCTTGTGTATGAGCCCCCTNGCGAATGCAACTCTGCTAGCTGGCNATAGNGGACNAANGCCAAAGAATGCCAAAGACCAAACGAAACAACGACGGTGGTAACAAAGAGTGGGATCGGNTTGTCAANNTCACGNGGGGAACTT]
[+] EMBL AL696492 [AGCAGATCCCGAGTTATGCAGGATAATAACACCGGACGGNATCTAATCGATCCTTCCATTAGCTCCGATTTCTTCGCGATGCTACGTACGAGCTGTCCGTCATTCTGGGGCAAATGTCCGGCCGATATGGTCGCCACGCTGAAACGGACGCAACTGTATCTTCGACAAAGGCGGCTCATACGGAAGCTGGACAATTTTGGGACCAAGCCACTGCATTCAAAANCAGTGCCCACGGTCTAATTGCCATACGGAACGCGGGTCGTCACTCTCTGTGTTCAACATTCCGACACACCAACGGTACGCATACGCACGATCTTGGCACGAGGAGTACGGGCGCGAATGTGGACATCTTACGCCNAGGGCGAATCTATCGGGCAGGACCGTTATCCCCGAAGCCCGGTCAAGAGGATACACCTTGNACANTGCTTGGAGCAACCGAAGGGTCAGCNTTGCTTTGGCCGACACCGGCGTTACCCGGCAANGGGCACGGTTGCACGCAAAAGCAGTGAATNCGCCGACAGTGGACGACAGCGGCAAGNAAGGACCTACACNGACAAACGGTTGGTTNCCCAAGGTANCGAAATAACCCGGGACCATGGGNATNTANCGTAATTCCCCGTATGTCCCNCACAGAACGTTGNCAGCCAGGGAAGAGNAAACTACGAACAACCCGGANGNGAATTAACTAACNGCACACCCGCAANACGTTTNGTTANACAANCAGCCCGCCAAACAATCAGCGTCGNTTAGGTGGGGCTTCACTGNACAATTCNCACGTCCAAAACGTGTTNNGCAAAACCATTNAAGTCGACAAGTNATTNATAACTATATTAACACAGGGGTTGCTCAAACACCATTACTNGGAAACAANCGGACNNAANNNGCCCTTGTGTATGAGCCCCCTNGCGAATGCAACTCTGCTAGCTGGCNATAGNGGACNAANGCCAAAGAATGCCAAAGACCAAACGAAACAACGACGGTGGTAACAAAGAGTGGGATCGGNTTGTCAANNTCACGNGGGGAACTT]
consensusID : consensus_5241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence
[CCGGCAGGATTAAATAACACCCGGCACGGCATCCTGACCGATCCTTCCACTAGCTCCGATTACTCCGCGATGCCTACGTACGAGCTGTCCGTCATTCTGCGGCAAATGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAGGCGGCATCATACGGAAGCTGGACAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCGCCCACGGTCTAGTGCATCGGACGGGGTCGTACTTTGTGTTCAAATTCGACACACCACCGTCCGCCATCGACGATCTGGACGAGGAGTACGGGCGCGATGTGGACATCGTACGCAAGCGAATCTATCGGGCGGACGTTTCGCAACAGGAAGAGATCACCTGCACGCTGCACGAGGAGCTGCTGCCGCCCGCGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGCCGAGCGCAACAAGACTAAGAAAGTGTTCCAGTACAATACCGGGCTGGATTACTATCCTTTCCAGAAGTGAGCGGGGCAAATCGAAGCGGAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGATTTTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAGG]
[+] EMBL BM582069 [CCGGCAGGATTAAATAACACCCGGCACGGCATCCTGACCGATCCTTCCACTAGCTCCGATTACTCCGCGATGCCTACGTACGAGCTGTCCGTCATTCTGCGGCAAATGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAGGCGGCATCATACGGAAGCTGGATAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCGCCCACGGTCTAGTGCATCGGACGGGGTCGTACTTTGTGTTCAAATTCGACACGCCACCGTCCGCCATCGACGATCTGGACGAGGAGTACGGGCGCGATGTGGACATCGTACGCAAGCGAATCTATCGGGCGGACGTTTCGCAACAGGAAGAGATCACCTGCACGCTGCACGAGGAGCTGCTGCCGCCCGCGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGCCGAGCGCAACAAGACTAAGAAAGTGTTCCAGTACAATACCGGGCTGGATTACTATCCTTTCCAGAAGTGAGCGGGGCAAATCGAAGCGGAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGATTTTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAGG]
[+] EMBL BM635165 [ ccgCGGTATCCTGATCGATCCTTCCATTAGCTCCGATTTCTCCGCGATGCCTACGTACGAGCTGTCCGTCATTCTGCGGCAAATGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAGGCGGCATCATACGGAAGCTGGACAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCGCCCACGGTCTAGTGCATCGGACGGGGTCGTACTTTGTGTTCAAATTTGACACACCACCGTCCGCCATCGACGATCTGGACGAGGAGTACGGGCGCGATGTGGACATCGTACGCAAGCGAATCTATCGGGCGGACGTTTCGCAACAGGAAGAGATCACCTGCACGCTGCACGAGGAGCTGCTGCCGCCCGCGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGCCGAGCGCAACAAGACTAAGAAAGTGTTCCAGTACAATACCGGGCTGGATTACTATCCTTTCCAGAAGTGAGCGGGGCAAAACGAAGCGAAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGTTTTTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAGG]
[+] EMBL BM641254 [ cCGGCAAATGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAGGCGGCATCATACGGAAGCTGGACAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCGCCCACGGTCTAGTGCATCGGACGGGGTCGTACTTTGTGTTCAAATTCGACACACCACCGTCTGCCATCGACGATCTGGACGAGGAGTACGGGCGCGATGTGGACATCGTACGCAAGCGAATCTATCGGGCGGACGTTTCGCAACAGGAAGAGATCACCTGCACGCTGCACGAGGAGCTGCTGCCGCCCGCGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGCCGAGCGCAATAAGGCTAAGAAAGTGTTCCAGTACAATACCGGGCTGGATTATTATCCTTTCCAGAAGTGAGCGGGGCAAATCGAAGCGGAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGATTTTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5241#0 AGCAGATCCCGAGTTATGCAGGAT--AATAACACCGG--ACGGNATC-TAATCGATCCTT 55
consensus_5241#1 --------------CCGGCAGGATTAAATAACACCCGGCACGGCATCCTGACCGATCCTT 46
******* ********* * **** *** * * ********
consensus_5241#0 CCATTAGCTCCGATTTCTTCGCGATGC-TACGTACGAGCTGTCCGTCATTCTGGGGCAAA 114
consensus_5241#1 CCACTAGCTCCGATTACTCCGCGATGCCTACGTACGAGCTGTCCGTCATTCTGCGGCAAA 106
*** *********** ** ******** ************************* ******
consensus_5241#0 TGTCCGG--CCGATATGGTCGCCACGCTGAAACGGAC-GCAACTG-TATCTTCGACAAAG 170
consensus_5241#1 TGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAG 166
***** * **************************** ******* **************
consensus_5241#0 GCGGC-TCATACGGAAGCTGGACAATTTTGGGACCAAGCCACTGC-ATTCAAAANCAGTG 228
consensus_5241#1 GCGGCATCATACGGAAGCTGGACAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCG 226
***** ********************** ** ************* ******** *** *
consensus_5241#0 CCCACGGTCTAATTGCCATACGGAACGCGGGTCGTCACTCTCTGTGTTCAACATTCCGAC 288
consensus_5241#1 CCCACGGTCTAGT----GCATCGGACG-GGGTCGTA---CTTTGTGTTCAAA--TTCGAC 276
*********** * * * *** ******* ** ********* * ****
consensus_5241#0 ACACCAACGGTACGCATACGCACGATCTTGGCACGAGGAGTACGGGCGCGAATGTGGACA 348
consensus_5241#1 ACACCACCG-TCCGC-CATCGACGATCTGG--ACGAGGAGTACGGGCGCGA-TGTGGACA 331
****** ** * *** * ******* * ******************* ********
consensus_5241#0 TCTTACGCCNAGGGCGAATCTATCGGGCAGGACCGTTATCCCCGAAGCCCGGTCAAGAGG 408
consensus_5241#1 TCGTACGC---AAGCGAATCTATCGGGCGGA--CGTT----TCGCAAC------AGGAAG 376
** ***** *************** * **** ** * * * ** *
consensus_5241#0 ATACACCTTGNACANTGCTTGGAGCAACCGAAGGGTCAGCNTTGCTTTGGCCGACACCGG 468
consensus_5241#1 AGATCACCTGCACGCTGCACGAGG-------------AGCT--------GCTGCCGCCCG 415
* * * ** ** *** * * *** ** * * ** *
consensus_5241#0 CGTTACCCGGCAANGGGCACG-GTTGCACGCAAAAGCAGTGAATNCGCCGACAGTGGACG 527
consensus_5241#1 CGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGC--CGAGCGCAACAAGACTAAGAA 473
*** * * * * *** * ** *** * ** ** * * * * *
consensus_5241#0 ACAGCGGCAAGNAAGGACCTACACNGACAAACGGTTGGTTNCCCAAGGTANCGAAATAAC 587
consensus_5241#1 AGTGTTCCAGTACAATACC-GGGCTGGATTACTATCCTTTCCAGAAGTGAGCGGGGCAAA 532
* * ** * *** * * ** * ** * *** * ** **
consensus_5241#0 CCGGGACCATGGGNATNTANCGTAATTCCCCGTATGTCCCNCACAGAACGTTGNCAGCCA 647
consensus_5241#1 TCGAAGC---GGAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGATT 589
** * ** * * ** *** *** * ** * *
consensus_5241#0 GGGAAGAGNAAACTACGAACAACCCGGANGNG-AATTAACTAACNGCACACCCGCAANAC 706
consensus_5241#1 TTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAGG-------------- 635
* ** * * * *** **** * *
consensus_5241#0 GTTTNGTTANACAANCAGCCCGCCAAACAATCAGCGTCGNTTAGGTGGGGCTTCACTGNA 766
consensus_5241#1 ------------------------------------------------------------
consensus_5241#0 CAATTCNCACGTCCAAAACGTGTTNNGCAAAACCATTNAAGTCGACAAGTNATTNATAAC 826
consensus_5241#1 ------------------------------------------------------------
consensus_5241#0 TATATTAACACAGGGGTTGCTCAAACACCATTACTNGGAAACAANCGGACNNAANNNGCC 886
consensus_5241#1 ------------------------------------------------------------
consensus_5241#0 CTTGTGTATGAGCCCCCTNGCGAATGCAACTCTGCTAGCTGGCNATAGNGGACNAANGCC 946
consensus_5241#1 ------------------------------------------------------------
consensus_5241#0 AAAGAATGCCAAAGACCAAACGAAACAACGACGGTGGTAACAAAGAGTGGGATCGGNTTG 1006
consensus_5241#1 ------------------------------------------------------------
consensus_5241#0 TCAANNTCACGNGGGGAACTT 1027
consensus_5241#1 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||