cluster # 5257

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Anopheles gambiae
cluster # 5257 cluster # 5257 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5257#0 length = 912 sequences # 3

consensus_5257#1 length = 423 sequences # 1

consensusID : consensus_5257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 912
fasta sequence

                              [CGAACCNCACCATGCGCAAGCCGACACGCAAACGAGCAAGTGGACGCGCAGCGGTGCGGTTATGTGCGGTACTATTGTTTTTTTAATGTGTATTGGAGAACATAATTGGCTGGCAAACGGGCAGGCAAGCGTCAGGCAGTCGTCTAAGGATGTGTTTTTCTTTGCAGGGTTCCATTTTTCCGTTGCAAAGCGCAAG-AGTGAAATTGGGTTTAAAAGGCCGGGCTGTATAGTGAAGCGTTCTGGTGCTGCTGCTGCTGCTGCTCTACTACTAACATTCACCACTGCCCGAGTTATTGTTCTGTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTACGTTTAGTTTAGACGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGAAAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCTTCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGTTCCTGCTCCTAATCAATCTGCGCGC--GCGCGTGCGCTTCAGCAAACCTACTGCTACCGGCTCGACTAACACTAGACACTAGACCTCAGCTACTACAAACTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTG-CCATGGCTACACTACACACACACAACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAGTGGAGGATGAAGCAAATAGCTTCTTTTTTTCTTTTCAATCCTTATCATACCTTCCCTTCTA]

[+] EMBL BX620133             [CGAACCNCACCATGCGCAAGCCGACACGCAAACGAGCAAGTGGACGCGCAGCGGTGCGGTTATGTGCGGTACTATTGTTTTTTTAATGTGTATTGGAGAACATAATTGGCTGGCAAACGGGCAGGCAAGCGTCAGGCAGTCGTCTAAGGATGTGTTTTTCTTTGCAGGGTTCCATTTTTCCGTTGCAAAGCGCAAG AGTGAAATTGGGTTTAAAAGGCCGGGCTGTATAGTGAAGCGTTCTGGTGCTGCTGCTGCTGCTGCTCTACTACTAACATTCACCACTGCCCGAGTTATTGTTCTGTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTACGTTTAGTTTAGACGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCGGCTGCTGCTGCTGCTGCTTATTGAAAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCTTCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGCTCCTGCTCCTAATCAATCTGCGCGC  GCGCGTGCGCTTCAGCAAACCTACTGCTACCGGCTCGACTAACACTAGACACTAGACCTCAGCTACTACAAACTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTG CCATGGCTACAC                                                                                                                                                                                                                                            ]
[-] EMBL BX605508             [                                                                                           ATTGGAGAACATAATTGGCTGGCAAACGGGCAGGCAAGCGTCAGACAGTCGTCTAAGGATGTGTTTTTCTTTGCA GTTTTCTGTTTTCCGTTGCAAAGCGCAAGCGGTGAAA CGGGTTTAAAAGGCCGGGCTGTGTAGTGAAGC TT       T CTGCTGCTGCTGCTTTACTACTAACATTCACCACTGCCCGAGTTATTGTTCTGTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTGCGTTTAGTTTAGACGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGAAAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCTTCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGTTCCTGCTC                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL BX622665             [                                                                                                                                                                                                                                                                                                                                                                               CGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGAAAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCTTCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCAATCTGCGCGCGTGCGCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAGACACTAGACCTCAGCTACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTGCCCATGGCTACACTACACACACACAACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAGTGGAGGATGAAGCAAATAGCTTCTTTTTTTCTTTTCAATCCTTATCATACCTTCCCTTCTA]




>consensus_5257#0
CGAACCNCACCATGCGCAAGCCGACACGCAAACGAGCAAGTGGACGCGCAGCGGTGCGGT
TATGTGCGGTACTATTGTTTTTTTAATGTGTATTGGAGAACATAATTGGCTGGCAAACGG
GCAGGCAAGCGTCAGGCAGTCGTCTAAGGATGTGTTTTTCTTTGCAGGGTTCCATTTTTC
CGTTGCAAAGCGCAAGAGTGAAATTGGGTTTAAAAGGCCGGGCTGTATAGTGAAGCGTTC
TGGTGCTGCTGCTGCTGCTGCTCTACTACTAACATTCACCACTGCCCGAGTTATTGTTCT
GTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTACGTTTAGTTTAGA
CGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGA
AAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCT
TCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGTTCCTGCTCCTAATCA
ATCTGCGCGCGCGCGTGCGCTTCAGCAAACCTACTGCTACCGGCTCGACTAACACTAGAC
ACTAGACCTCAGCTACTACAAACTACTGCTACTACCACCACACTACTAATACCCTCTTGG
CTTGCCATGGCTACACTACACACACACAACACACAACACGTCTAGCACACGCTATGAGAC
TGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGT
TTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTC
AATAATGAAAGTGGAGGATGAAGCAAATAGCTTCTTTTTTTCTTTTCAATCCTTATCATA
CCTTCCCTTCTA

consensusID : consensus_5257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [TGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCAATCTGCGCGCGTGCGCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAGACACTAGACCTCAGTACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTTGGCCCATGGCTACACTACACACACACACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAGTGGAGGATGAAGCAAAATAGCTTCTTTTTTTCTTTTCAATCCTTATTCAACCTCGGCGCGATC]

[-] EMBL AL696934             [TGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCAATCTGCGCGCGTGCGCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAGACACTAGACCTCAGTACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTTGGCCCATGGCTACACTACACACACACACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAGTGGAGGATGAAGCAAAATAGCTTCTTTTTTTCTTTTCAATCCTTATTCAACCTCGGCGCGATC]




>consensus_5257#1
TGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCAATCTGCGCGCGTGC
GCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAGACACTAGACCTCAG
TACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTTGGCCCATGG
CTACACTACACACACACACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAAC
TGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAA
ACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAG
TGGAGGATGAAGCAAAATAGCTTCTTTTTTTCTTTTCAATCCTTATTCAACCTCGGCGCG
ATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5257#0      CGAACCNCACCATGCGCAAGCCGACACGCAAACGAGCAAGTGGACGCGCAGCGGTGCGGT 60
consensus_5257#1      ------------------------------------------------------------
                                                                                  

consensus_5257#0      TATGTGCGGTACTATTGTTTTTTTAATGTGTATTGGAGAACATAATTGGCTGGCAAACGG 120
consensus_5257#1      ------------------------------------------------------------
                                                                                  

consensus_5257#0      GCAGGCAAGCGTCAGGCAGTCGTCTAAGGATGTGTTTTTCTTTGCAGGGTTCCATTTTTC 180
consensus_5257#1      ------------------------------------------------------------
                                                                                  

consensus_5257#0      CGTTGCAAAGCGCAAGAGTGAAATTGGGTTTAAAAGGCCGGGCTGTATAGTGAAGCGTTC 240
consensus_5257#1      ------------------------------------------------------------
                                                                                  

consensus_5257#0      TGGTGCTGCTGCTGCTGCTGCTCTACTACTAACATTCACCACTGCCCGAGTTATTGTTCT 300
consensus_5257#1      ------------------------------------------------------------
                                                                                  

consensus_5257#0      GTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTACGTTTAGTTTAGA 360
consensus_5257#1      ------------------------------------------------------------
                                                                                  

consensus_5257#0      CGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGA 420
consensus_5257#1      ------------------------------------------------------------
                                                                                  

consensus_5257#0      AAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCT 480
consensus_5257#1      ------------------------------------------------------------
                                                                                  

consensus_5257#0      TCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGTTCCTGCTCCTAATCA 540
consensus_5257#1      --------------TGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCA 46
                                    ***************************** ****************

consensus_5257#0      ATCTGCGCGCG--CGCGTGCGCTTCAGCAAACCTACTGCTACCGGCTCGACTAACACTAG 598
consensus_5257#1      ATCTGCGCGCGTGCGCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAG 106
                      ***********  **** ************************* ****************

consensus_5257#0      ACACTAGACCTCAGCTACTACAAACTACTGCTACTACCACCACACTACTAATACCCTCTT 658
consensus_5257#1      ACACTAGACCTCAG-TACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTT 165
                      ************** ********* ***********************************

consensus_5257#0      GGCTTG---CCATGGCTACACTACACACACACAACACACAACACGTCTAGCACACGCTAT 715
consensus_5257#1      GGCTTTGGCCCATGGCTACACTACACACACACA-CACACAACACGTCTAGCACACGCTAT 224
                      *****    ************************ **************************

consensus_5257#0      GAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTT 775
consensus_5257#1      GAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTT 284
                      ************************************************************

consensus_5257#0      TTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTA 835
consensus_5257#1      TTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTA 344
                      ************************************************************

consensus_5257#0      TTGTCAATAATGAAAGTGGAGGATGAAGCAAA-TAGCTTCTTTTTTTCTTTTCAATCCTT 894
consensus_5257#1      TTGTCAATAATGAAAGTGGAGGATGAAGCAAAATAGCTTCTTTTTTTCTTTTCAATCCTT 404
                      ******************************** ***************************

consensus_5257#0      ATCATACCTTCCCTTCTA- 912
consensus_5257#1      ATTCAACCTCGGCGCGATC 423
                      **   ****   *