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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1264 fasta sequence
[CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCAACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTCACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCTGCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCATCGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAAGGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTGCGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCATGGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCAGCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACAC------ACACCCGTAGCACACGGACAATCGGCCCTAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACGCGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTTTAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAAACAA]
[+] EMBL AL697102 [CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCAACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTCACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCTGCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCATCGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAAGGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTGCGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCATGGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCAGCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGC ]
[+] EMBL BX611208 [ ATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGCGAGACGAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACAC ACACCCGTAGCACACGGACAATCGGCCCTAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCT ]
[+] EMBL BM598117 [ ccgCAACGAGTACTTGTTTGCGCTGACCAGTCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCCGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTACAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACACACACATACACCCGTAGCACACGGACAATAGGCCCTAGGCTGCAATACCCTGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACGCGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTTTAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAAACAA]
consensusID : consensus_5263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAATAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTAC]
[+] EMBL BM621153 [CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAATAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5263#0 CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCA 60
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 ACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTC 120
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 ACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCT 180
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 GCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCAT 240
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 CGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAA 300
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 GGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTG 360
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 CGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCAT 420
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 GGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCA 480
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 GCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGA 540
consensus_5263#1 --------CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAA 52
* *** * *********************************** *
consensus_5263#0 TAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGT 600
consensus_5263#1 TAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGT 112
****** ***** ***** *****************************************
consensus_5263#0 GCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGT 660
consensus_5263#1 GCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGT 172
************ ******************************** ******* *****
consensus_5263#0 GTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCT 720
consensus_5263#1 GTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCT 232
******************************* ****************************
consensus_5263#0 CGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGC 780
consensus_5263#1 CGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGC 292
******************************* ****************************
consensus_5263#0 TGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTT 840
consensus_5263#1 TGGCACCAGCCCTAC--------------------------------------------- 307
***************
consensus_5263#0 CCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAG 900
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 AGACAATTATGCTAATTTTGTTTGACACACACACACCCGTAGCACACGGACAATCGGCCC 960
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 TAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTC 1020
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 CTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTT 1080
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 TTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACG 1140
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 CGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTT 1200
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 TAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAA 1260
consensus_5263#1 ------------------------------------------------------------
consensus_5263#0 ACAA 1264
consensus_5263#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||