cluster # 5264

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Anopheles gambiae
cluster # 5264 cluster # 5264 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5264#0 length = 549 sequences # 2

consensus_5264#1 length = 373 sequences # 2

consensusID : consensus_5264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 549
fasta sequence

                              [TATCGCACAAAAAAGAAACTTTTAACAATCTTCTACGGCTCCCGCCCCCGTTATGTAACAATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCTTTCTTTTCTACGAAACACTTACCAACACACTCTTCTTGTGGCAACGCAGGTTAACGCACAATGCAAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGGCAAAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAATAAGCTAAAAAAAACAGCATTAATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGGTATTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCC]

[+] EMBL BX616200             [TATCGCACAAAAAAGAAACTTTTAACAATCTTCTACGGCTCCCGCCCCCGTTATGTAACAATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCTTTCTTTTCTACGAAACACTTACCAACACACTCTTCTTGTGGCAACGCAGGTTAACGCACAATGCAAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGGCAAAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAATAAGCTAAAAAAAACAGCATTAATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGGTATTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCC]
[+] EMBL BX608777             [                                   CGGCTCCCGCCCCCGTTATGTAACAATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCCTTCTTTTCTACGAAACACTTACCAACACACTCTTCTTGTGGCAACGCAGGTTAACGCACAATGCAAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGGCAAAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAATAAGCTAAAAAAAACAGCATTAATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGGTATTTAACAGGC                                                                                                                                                                                    ]




>consensus_5264#0
TATCGCACAAAAAAGAAACTTTTAACAATCTTCTACGGCTCCCGCCCCCGTTATGTAACA
ATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCTTTCT
TTTCTACGAAACACTTACCAACACACTCTTCTTGTGGCAACGCAGGTTAACGCACAATGC
AAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGGCA
AAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAATAAGCTAAAAAAAACAGCATT
AATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGGTAT
TTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCA
ATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATA
TATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAGATGGTAAGATGGTAAATTAAAGC
TGAACCTCC

consensusID : consensus_5264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 373
fasta sequence

                              [TTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAACAAGGACATTCCACATTGAAATGTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAACAAAAATGACGAAAAGAAACCAAACAACACAATATAGCAAAAGTAAGTTAAATGGATCTGTTTAAGGAAAAGAGAGCGAAAAAATACGAACAAAAAAAAACGAGACAAACCAAGAGCAAAACAAAACGAATAACAAATGAAACGAAGACAAATTATTG]

[+] EMBL BX608775             [TTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAACAAGGACATTCCACATTGAAATGTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAACAAAAATGACGAAAAGAAACCAAACAACACAATATAGCAAAAGTAAGTTAAATGGATCTGTTTAAGGAAAAGAGAGCGAAA                                                                             ]
[+] EMBL BX617949             [                                                                                                                          ATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAACAAGGACATTCCACATTGAAATGTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAACAAAAATGACGAAAAGAAACCAAACAACACAATATAGCAAAAGTAAGTTAAATGGATCTGTTTAAGGAAAAGAGAGCGAAAAAATACGAACAAAAAAAAACGAGACAAACCAAGAGCAAAACAAAACGAATAACAAATGAAACGAAGACAAATTATTG]




>consensus_5264#1
TTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCC
AATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTAT
ATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAACAAGGACATTCCACATTGAAAT
GTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAACAAAAATGACGAAAAGAAACCAAAC
AACACAATATAGCAAAAGTAAGTTAAATGGATCTGTTTAAGGAAAAGAGAGCGAAAAAAT
ACGAACAAAAAAAAACGAGACAAACCAAGAGCAAAACAAAACGAATAACAAATGAAACGA
AGACAAATTATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5264#0      TATCGCACAAAAAAGAAACTTTTAACAATCTTCTACGGCTCCCGCCCCCGTTATGTAACA 60
consensus_5264#1      --------------------TTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTA-A 39
                                          *******  *  * *    *   *        ***  * *

consensus_5264#0      ATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCTTTCT 120
consensus_5264#1      ATTAAAGC--TGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGT 97
                      ** * * *   *** *    ****   * **   * * ***   **** ** *      *

consensus_5264#0      TTTCTACGAAACACTTAC-CAACACACTCTTCTTGTGGCAACGCAGG-TTAACGCACAAT 178
consensus_5264#1      TAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAA 157
                      *   **  *     ***    * * *    * *     **  * **    ***  * ** 

consensus_5264#0      GCAAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGG 238
consensus_5264#1      ACAAGG-ACATTCCACATTGAAATGTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAAC 216
                       ***   ***  * *  ** *    *   *  **  *    **    * ** ** **   

consensus_5264#0      CAAAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAA-TAAGCTAAAAAAAACAGC 297
consensus_5264#1      AAAAATGACGAAAAGAAACCAAACAACACAATATAGCAAAAGTAAGTTAAATGGATCTGT 276
                       ****    * *** ****** ** *   ** * * ** ** **** ****   * * * 

consensus_5264#0      ATTAATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGG 357
consensus_5264#1      -TTAAGGA---------AAAGAGAGCGAAAAAATACGAACA-AAAAAAAACGAGACAAAC 325
                       ****  *         *** * **  ****** **  *** * *  * *  * * **  

consensus_5264#0      TATTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCC 417
consensus_5264#1      CAAGAGCAAAACAAAACGAATAACAAATGAAACGAAGACAAATTATTG------------ 373
                       *      *  *   *   **   * ***  * ** *  ******  *            

consensus_5264#0      CCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATT 477
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      ATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAGATGGTAAGATGGTAAATTAA 537
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      AGCTGAACCTCC 549
consensus_5264#1      ------------