cluster # 5276

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Anopheles gambiae
cluster # 5276 cluster # 5276 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5276#0 length = 705 sequences # 3

consensus_5276#1 length = 420 sequences # 1

consensusID : consensus_5276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 705
fasta sequence

                              [CCGAACGGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTTTGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGAAACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGTGCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCGACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAGCTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTACGAGCTCCGCCCGGAGGACACCAACGCCAACACGTTCATCGCCAACATTGCCATCG]

[+] EMBL BM587683             [CCGAAGTGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTTTGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGAAACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGTGCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCGACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAGCTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTAC                                                       ]
[+] EMBL BM606111             [    cCGGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTTTGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGAAACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGTGCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCGACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAGCTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTACGAGCTCCGCCCGGAGGACACCAACGCCAACACGTTCATCGCCAACATTGCCATCG]
[+] EMBL BM603514             [     ccGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTTTGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGAAACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGTGCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCGACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAACTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGA                                                                              ]




>consensus_5276#0
CCGAACGGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTT
TGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGA
AACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGT
GCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGC
AGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCG
ACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCG
TCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACC
AGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGG
GCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGAC
TGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAGCTCTGCCCGT
ACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTACGAGCTCCGCC
CGGAGGACACCAACGCCAACACGTTCATCGCCAACATTGCCATCG

consensusID : consensus_5276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [ATCCNAGTAAGCAGTTTTGGGACCAGTGTGCCAGAGTTCTATGGAGAAGCGAACAACACACATCAGAAACAGAAACGTTGACCANAAGGCACGTGTACGGTGGAATGTTGCTGATATGTACGTGCTGGTGGGCGCCGGGCAGTGGTCAGTGGAACGCAGAAANACTCCACGAGCGCTATACTGGCGAGCAGCTGGACTTTGTCTTCCCCAATCAAAAGCGCTCAAGCAACAGGCACTGGCTGCGGGGCGACTACTGTGTCCACGAACAGGTCTGTCGCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGGTACAAGATGGAAGGATGGTATCCCTCGACGCTTAACTACATTGACATGAACAGACACCGTCCGGTTCGCGGCCTCATCCCCTAACCGGACTGGTCCTCGA]

[+] EMBL AL697413             [ATCCNAGTAAGCAGTTTTGGGACCAGTGTGCCAGAGTTCTATGGAGAAGCGAACAACACACATCAGAAACAGAAACGTTGACCANAAGGCACGTGTACGGTGGAATGTTGCTGATATGTACGTGCTGGTGGGCGCCGGGCAGTGGTCAGTGGAACGCAGAAANACTCCACGAGCGCTATACTGGCGAGCAGCTGGACTTTGTCTTCCCCAATCAAAAGCGCTCAAGCAACAGGCACTGGCTGCGGGGCGACTACTGTGTCCACGAACAGGTCTGTCGCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGGTACAAGATGGAAGGATGGTATCCCTCGACGCTTAACTACATTGACATGAACAGACACCGTCCGGTTCGCGGCCTCATCCCCTAACCGGACTGGTCCTCGA]




>consensus_5276#1
ATCCNAGTAAGCAGTTTTGGGACCAGTGTGCCAGAGTTCTATGGAGAAGCGAACAACACA
CATCAGAAACAGAAACGTTGACCANAAGGCACGTGTACGGTGGAATGTTGCTGATATGTA
CGTGCTGGTGGGCGCCGGGCAGTGGTCAGTGGAACGCAGAAANACTCCACGAGCGCTATA
CTGGCGAGCAGCTGGACTTTGTCTTCCCCAATCAAAAGCGCTCAAGCAACAGGCACTGGC
TGCGGGGCGACTACTGTGTCCACGAACAGGTCTGTCGCGGTCGGTATCGAGCGCTGGGAG
AACAAGCTGTTCGTCTCGGGTACAAGATGGAAGGATGGTATCCCTCGACGCTTAACTACA
TTGACATGAACAGACACCGTCCGGTTCGCGGCCTCATCCCCTAACCGGACTGGTCCTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5276#0      CCGAACGGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTT 60
consensus_5276#1      ------------------------------------------ATCCNAGTAAGCAGTTTT 18
                                                                * **        ******

consensus_5276#0      TGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGA 120
consensus_5276#1      -GGGACCA----GTGTGCCAGAGTTCTATGG----AGAAGCGAACAA-CACACA-TCAGA 67
                       *******    ***  *   *****  * *    ************ ****** *****

consensus_5276#0      AACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGT 180
consensus_5276#1      AACAGAAACGTT-GACCANAAGGCACG---TGTACGGTGGAATGTTGCTGATATGTACGT 123
                      ************ ** ** ** * **    **********************     ***

consensus_5276#0      GCCTGGTGGCCGCCGG-CAGTG-TCAGTGGAACGCAGAAGC--TCCAGGAGCGCTATAGC 236
consensus_5276#1      GC-TGGTGGGCGCCGGGCAGTGGTCAGTGGAACGCAGAAANACTCCACGAGCGCTATACT 182
                      ** ****** ****** ***** ****************    **** **********  

consensus_5276#0      TGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCC--TCAAGCAACAGGCACTGGC-G 293
consensus_5276#1      GGCGAGCAGCTGGACTTTGTCTTCCCCAATCAAAAGCGCTCAAGCAACAGGCACTGGCTG 242
                       *  *****************************   *  ******************* *

consensus_5276#0      CGGGGCGACTAC-GTGCCCACGAAC-GGTCTGCCG--GTCGGTATCGAGCGCTGGGAGAA 349
consensus_5276#1      CGGGGCGACTACTGTGTCCACGAACAGGTCTGTCGCGGTCGGTATCGAGCGCTGGGAGAA 302
                      ************ *** ******** ****** **  ***********************

consensus_5276#0      CAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACAT 409
consensus_5276#1      CAAGCTGTTCGTCTCGGGTACAAGATGGAAGGATGGTATCCC-TCGACGCTTAACTACAT 361
                      *****************   ********************** *****************

consensus_5276#0      TGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTC 469
consensus_5276#1      TGACATGAAC-AGACACCGTCCGGTTCGCGG--CCTCATCCCCTAACCGGACTGGTCCTC 418
                      ********** ****************** *  ************ **************

consensus_5276#0      GAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAA 529
consensus_5276#1      GA---------------------------------------------------------- 420
                      **                                                          

consensus_5276#0      GTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCA 589
consensus_5276#1      ------------------------------------------------------------
                                                                                  

consensus_5276#0      GCTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTA 649
consensus_5276#1      ------------------------------------------------------------
                                                                                  

consensus_5276#0      CGAGCTCCGCCCGGAGGACACCAACGCCAACACGTTCATCGCCAACATTGCCATCG 705
consensus_5276#1      --------------------------------------------------------