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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1055 fasta sequence
[CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAGTATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTGGACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTGAAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGGTGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGTGGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCGCTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCCATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACT-AGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTT-CGATCTGGGTTGGAATATCTGAATGTGATTC]
[+] EMBL BM596570 [CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAGTATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTGGACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTGAAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGGTGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGTGGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCGCTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCCATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGT ]
[+] EMBL BM601638 [ ccgCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACT AGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTT CGATCTGGGTTGGAATATCTGAATGTGATTC]
[+] EMBL BM590220 [ ccgCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACTAAGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTTCCAATCTGGGGTGGAATATCTGAAT ]
consensusID : consensus_5278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 816 fasta sequence
[GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGAACTACCTGTAGCAGGTAACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAACAACGGACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCACGGACGGTGGCAACCGGCCAGTGGCAGCAGCAGCAGNCAGCAGCAGTAACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCAGTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCCTCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAATAGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAAGCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGGANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAGNTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTANGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA]
[+] EMBL AL697470 [GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGAACTACCTGTAGCAGGTAACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAACAACGGACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCACGGACGGTGGCAACCGGCCAGTGGCAGCAGCAGCAGNCAGCAGCAGTAACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCAGTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCCTCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAATAGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAAGCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGGANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAGNTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTANGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5278#0 CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAG 60
consensus_5278#1 ------------------------------------------------------------
consensus_5278#0 TATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTG 120
consensus_5278#1 ------------------------------------------------------------
consensus_5278#0 GACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTG 180
consensus_5278#1 ------------------------------------------------------------
consensus_5278#0 AAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGG 240
consensus_5278#1 ------------------------------------------------------------
consensus_5278#0 TGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGT 300
consensus_5278#1 ------------------------------------------------------------
consensus_5278#0 GGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCG 360
consensus_5278#1 ------------------------------------------------------------
consensus_5278#0 CTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCC 420
consensus_5278#1 ------------------------------------------------------------
consensus_5278#0 ATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTA 480
consensus_5278#1 -----GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGA--ACTACCTGTAGCAGGTA 53
*** ************************* ******* ********
consensus_5278#0 ACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCT 540
consensus_5278#1 ACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGC-GCTTCGTCCTCCTCTTCGAACTCT 112
******************** ** *********** ************************
consensus_5278#0 TCGTCCGGCTCCTCCTCCTCGTCCTCGT-CTTCCGTTCCGTCCTCCTCGACGATGGTCAG 599
consensus_5278#1 TCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAG 172
**************************** *******************************
consensus_5278#0 CACGGTATCGGTTG-GGCAGCAGCAGCACCAGCACC--GGCCAGC-GCAACG-ATTGAAC 654
consensus_5278#1 CACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAAC 232
************** ************* ******* * ***** ****** *******
consensus_5278#0 AACGGCACCAGCAAC-GGAAGCAGAAGTGACGC-GTGCAGTTCGTCCGGGCTTGGCATTT 712
consensus_5278#1 AACGG-ACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTT 291
***** ********* ***************** **************************
consensus_5278#0 CCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTA 772
consensus_5278#1 CCTACCCACGG-ACGGTGGC-AACCGGCCAGTGGCAGCAGCAGCAG--NCAGCAGCAGTA 347
******** ** ******** ** ****** *************** ***********
consensus_5278#0 ACG-GTAGCAGT--AGCATCAATA-GTAGCAACGTCAATGGCACCCTGC-CAG--CAGCA 825
consensus_5278#1 ACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCA 407
*** ******** ********* ******** ************** *** ****
consensus_5278#0 GTG-AGCAGCAGTAA-TGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCC 883
consensus_5278#1 GTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCC 467
** **** ****** ******* ************** ********************
consensus_5278#0 TCC-GCATCCTCC-TCCCCGGTCC-GTGACGACGATCGTT--CCACGTTCGATAATAG-- 936
consensus_5278#1 TCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAAT 527
*** ** **** ********** **** ******* * ***** * ***
consensus_5278#0 ---CAATAGTACTAGC--GATGGT--GGTG-CAGCTCAAATCT---GAAAGCAGGACGCA 985
consensus_5278#1 AGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAA 587
***** **** ****** **** ************ ** *** *
consensus_5278#0 GCGGA-CGCAGTGGCGGG--CTGAAGTGTGTAATCGTC--CTTTCGATC--TGGGTTGGA 1038
consensus_5278#1 GCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGG 647
***** ***** ***** *** * * * * * * ** ** * *
consensus_5278#0 ATATCTGAATGTGATTC------------------------------------------- 1055
consensus_5278#1 ANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAG 707
* * * ** *
consensus_5278#0 ------------------------------------------------------------
consensus_5278#1 NTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTA 767
consensus_5278#0 -------------------------------------------------
consensus_5278#1 NGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA 816
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||