These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 840 fasta sequence [GTTTATTGTAAACAAAGTGCGTTCAAAAGCCGGCCTGGGGACAGAAAAGGAATCCCTTTGCTCAAGGACAATTTTCGTGTTTTTTAATTGTTTCTTAGTTTGTATACACACTCAATACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTCCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCACGGAAAAGGTGAAGGAACTGTTGGAAAATGCGGCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCCACCCTGCCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGACCAAAGATTGACCCGCG-GGAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCG-AAGCTGCTCAAGTACCCCGGGGCGCGCG-ACATTTTCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCG-AGGAGCAAGCTCGACCAAACGAA-GTA-CTGCCAGCCGGCCGTCATGGTAACGTCCTCTANGGCCGCGCTCGAACAGTTGCGACGAGGAGCGCCCGAACGCGATCGANGAACTGCTTCGCCACGGCCGGCTTTAAGNCTTGGGCGAGCTGACCGCGCTCGTGTTTGCCGGTGCGATACCCTTCGACAAGGGCCTGCGGTTGGTGCAAGATCCGGGCGGAAGCGATGCAGCTCGCGAGCCANGCAGGCNNAAGGGCGCAATGGGCGACGGTAACTGTTCGGTGCGGACGGAACGCATCGGTGAGGCGTGCCNGGAAGCACT] [+] EMBL BX601935 [GTTTATTGTAAACAAAGTGCGTTCAAAAGCCGGCCTGGGGACAGAAAAGGAATCCCTTTGCTCAAGGACAATTTTCGTGTTTTTTAATTGTTTCTTAGTTTGTATACACACTCAATACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTCCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCACGGAAAAGGTGAAGGAACTGTTGGAAAATGCGGCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCCACCCTGCCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGACCAAAGATTGACCCGCG GGAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGCATGGGCTCG AAGCTGCTGAAGTACCCCGGGGCGCGCG ACATTTTCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCG AGGAGCAAGCTCGACCAAACGAA GTA CTGCCAGCCGGCCGTCATGGTA ] [+] EMBL BM600908 [ ccgCAAAAGCCGGCCTGGGGACACAAAAGGAATCCCTTTGCTCAAGGAAAATTTTCGTGTTTTT ACTGTTTCTTAATTCGTATACACACTCAATACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCACGGAAAAGGTGAAGGAACTGTTGGAAAATGCGGCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCCACCCTGCCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGACCAAAGATTGACCCGCG GGAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCG AAGCTGCTCAAGT ] [+] EMBL BX619547 [ aggCCCGCGNTNAAACGAACGTCATCCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCGTAAGCTGCTCAAGTACCCTGGGGCGCGCGAACATTTTCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAAGNAGCAAGCTCGACCAAACGAATGTANCTGCCAGCCGGCCGTCATGGTAACGTCCTCTANGGCCGCGCTCGAACAGTTGCGACGAGGAGCGCCCGAACGCGATCGANGAACTGCTTCGCCACGGCCGGCTTTAAGNCTTGGGCGAGCTGACCGCGCTCGTGTTTGCCGGTGCGATACCCTTCGACAAGGGCCTGCGGTTGGTGCAAGATCCGGGCGGAAGCGATGCAGCTCGCGAGCCANGCAGGCNNAAGGGCGCAATGGGCGACGGTAACTGTTCGGTGCGGACGGAACGCATCGGTGAGGCGTGCCNGGAAGCACT] consensusID : consensus_5291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [AGATCCCCCGAGGTTAGCGGCCTGGCGGACACAAAAGGAATCCCTTTGCTCAAGGAAAATTTTCGTGTTTATTACTGTGNTCTTAAGTTCGTATACAGCACTCAAGTACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCTACGGAAAAGGTGAAGGAACTGTTGGAAAATGCTGGCCACCTTCGACGATATTAAACCGACCGAAGATTGACCCGCGGGAAACGAACGTCATACCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCGAAGCTGCGTCAAGTACCCTGGGGCGCGCGACATTATATCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAAGAGCAAGCTCGAGCAAACGAAGTACTGGCAGCCGGCCGTCATGGTAACGTCCCTAGCCGCGCTCGAACAGANNGCGCGAGGAGCAGCCCGAACGCGATCGAGAACTGGGTTCGACCAAGGACGG] [+] EMBL AL930006 [AGATCCCCCGAGGTTAGCGGCCTGGCGGACACAAAAGGAATCCCTTTGCTCAAGGAAAATTTTCGTGTTTATTACTGTGNTCTTAAGTTCGTATACAGCACTCAAGTACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGGGACGGACGCGAAACTCCCGCCCGTAGTTGGCTACGGAAAAGGTGAAGGAACTGTTGGAAAATGCTGGCCACCTTCGACGATATTAAACCGACCGAAGATTGACCCGCGGGAAACGAACGTCATACCTCTTCCCGGGCCAGGGCACCCAGTACGTCGGTATGGGCTCGAAGCTGCGTCAAGTACCCTGGGGCGCGCGACATTATATCGCCCTCGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAAGAGCAAGCTCGAGCAAACGAAGTACTGGCAGCCGGCCGTCATGGTAACGTCCCTAGCCGCGCTCGAACAGANNGCGCGAGGAGCAGCCCGAACGCGATCGAGAACTGGGTTCGACCAAGGACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5291#0 GTTTATTGTAAACAAAGTGCGTTCAAAAGCCGGCCTGG-GGACAGAAAAGGAATCCCTTT 59 consensus_5291#1 -------------AGATCCCCCGAGGTTAGCGGCCTGGCGGACACAAAAGGAATCCCTTT 47 * * * ******** ***** *************** consensus_5291#0 GCTCAAGGACAATTTTCGTGTTTTTTAAT-TGTTTCTTAGTTTGTATACA-CACTCAA-T 116 consensus_5291#1 GCTCAAGGAAAATTTTCGTGTTTATTACTGTGNTCTTAAGTTCGTATACAGCACTCAAGT 107 ********* ************* *** * ** * * **** ******* ******* * consensus_5291#0 ACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTCCACCGGACGTTGCGTCTGCTCGG 176 consensus_5291#1 ACTCGCCATGCTGTTTCGTGCATTTCACCGCAAACTGCACCGGACGTTGCGTCTGCTCGG 167 ************************************ *********************** consensus_5291#0 GACGGACGCGAAACTCCCGCCCGTAGTTGGC-ACGGAAAAGGTGAAGGAACTGTTGGAAA 235 consensus_5291#1 GACGGACGCGAAACTCCCGCCCGTAGTTGGCTACGGAAAAGGTGAAGGAACTGTTGGAAA 227 ******************************* **************************** consensus_5291#0 ATGC-GGCCACCTTCGACGATATTAAACCGACCGGCGGGGGGACGGACAGCGAGTGGGCC 294 consensus_5291#1 ATGCTGGCCACCTTCGACGATATTAAACCGACCG-------------------------- 261 **** ***************************** consensus_5291#0 ACCCTGCCGTACGTGGCCGGCACGTACATCAGCCGCGACCAGTCGAAAAAAGCGAACCGA 354 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 CCAAAGATTGACCCGCGGGAAACGAACGTCAT-CCTCTTCCCGGGCCAGGGCACCCAGTA 413 consensus_5291#1 ---AAGATTGACCCGCGGGAAACGAACGTCATACCTCTTCCCGGGCCAGGGCACCCAGTA 318 ***************************** *************************** consensus_5291#0 CGTCGGTATGGGCTCGAAGCTGC-TCAAGTACCCCGGGGCGCGCGACATTTT--CGCCCT 470 consensus_5291#1 CGTCGGTATGGGCTCGAAGCTGCGTCAAGTACCCTGGGGCGCGCGACATTATATCGCCCT 378 *********************** ********** *************** * ****** consensus_5291#0 CGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAGGAGCAA 530 consensus_5291#1 CGCCAACGAGGTGCTCGGGTACGATCTGCTCAAGATCTGCATCGAGGGACCGAAGAGCAA 438 ***************************************************** ****** consensus_5291#0 GCTCGACCAAACGAAGTACTGCCAGCCGGCCGTCATGGTAACGTCCTCTANGGCCGCGCT 590 consensus_5291#1 GCTCGAGCAAACGAAGTACTGGCAGCCGGCCGTCATGGTAACGTCCC---TAGCCGCGCT 495 ****** ************** ************************ ******** consensus_5291#0 CGAACAGTTGCGACGAGGAGC-GCCCGAACGCGATCGANGAACTGCTTCG-CCACGGCCG 648 consensus_5291#1 CGAACAGANNGCGCGAGGAGCAGCCCGAACGCGATCGAGAACTGGGTTCGACCAAGGACG 555 ******* ******** **************** * * **** *** ** ** consensus_5291#0 GCTTTAAGNCTTGGGCGAGCTGACCGCGCTCGTGTTTGCCGGTGCGATACCCTTCGACAA 708 consensus_5291#1 G----------------------------------------------------------- 556 * consensus_5291#0 GGGCCTGCGGTTGGTGCAAGATCCGGGCGGAAGCGATGCAGCTCGCGAGCCANGCAGGCN 768 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 NAAGGGCGCAATGGGCGACGGTAACTGTTCGGTGCGGACGGAACGCATCGGTGAGGCGTG 828 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 CCNGGAAGCACT 840 consensus_5291#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||