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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1005 fasta sequence
[CCGGATCGGTGGACGTGTGTAAAGCGGGTGAGAAAGCGACCCCGATTTTTTTGTGTTCTTTTTGCTTGCTTGCGTATCCGTGCTTATCCGTTGGTCACCAGCAAACCACCACTACGCCAGCAACGCCAACTTCGACCTGACAGCAGATCGACACGACACTGTGATGGCACTGGCTCGCCACCACTACTGCTGCTGCTGATCCGTGCGGTCCAGAAACCGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCCAGTTTCGGTTCGGCGGACTATTCCACCAGACCACCCCCTTCCCCAACCAGCAGAAAAGAAAGTACGGCGCAGGGAGTAACGATTTACACCATTTAAGGCAAAAACACGTCTCTCGTTCGGGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGCCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGACACAGGACGGGTTTTGGAAAGGCTTTTTTTCCACCTTTTTGCTTGGTTCACCATCAGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGAGCGCTTGTGAAGAGCGCAAGGCAAGAGAAGCAAATAGTTGTGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTGTGCGAATTGCAACGTATTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTTGTGTTAATTTTAACTCTAAATATGTAACGAATAATGTTTACCCAAGTTTAGTGTAAATTTGTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCAGCAGGCAAGCAAACACCTGGCGTTATGTGCTGGTTTA]
[+] EMBL BM599973 [CCGGATCGGTGGACGTGTGTAAAGCGGGTGAGAAAGCGACCCCGATTTTTTTGTGTTCTTTTTGCTTGCTTGCGTATCCGTGCTTATCCGTTGGTCACCAGCAAACCACCACTACGCCAGCAACGCCAACTTCGACCTGACAGCAGATCGACACGACACTGTGATGGCACTGGCTCGCCACCACTACTGCTGCTGCTGATCCGTGCGGTCCAGAAACCGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCCAGTTTCGGTTCGGCGGACTATTCCACCAGACCACCCCCTTCCCCAACCAGCAGAAAAGAAAGTACGGCGCAGGGAGTAACGATTTACACCATTTAAGGCAAAAACACGTCTCTCGTTCGGGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGCCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGACACAGGACGGGTTTTGGAAAGGCTTTTTTTCCACCTTTTTGCTTGGTTCACCATCAGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGAGCGCTTGTGAAGAGCGCAAGGCAAGAGAAGCAAATAGTTGTGATG ]
[+] EMBL BX607826 [ gtGCTCGCCACCACTACTGCTGCTGCTGATCCGTGCGGTCCAGAAACCGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCCAGTTTCGGTTCGGCGGACTATTCCACCAGACCACCCCCTTCCCCAACCAGCAGAAAAGAAAGTACGGCGCAGGGAGTAACGATTTACACCATTTAAGGCAAAAACACGTCTCTCGTTCGGGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGCCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGACACAGGACGGGTTTTGGAAAGGCTTTTTTTCCACCTTTTTGCTTGGTTCACCATCAGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGAGCGCTTGTGAAGAGCGCAAGGCAAGAGAAGCAAATAGTTGTGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTGTGCGAATTGCAACGTATTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTTGTGTTAATTTTAACTCTAAATATGTAACGAATAATGTTTACCCAAGTTTAGTGTAAATTTGTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCAGCAGGCAAGCAAACACCTGGCGTTATGTGCTGGTTTA]
consensusID : consensus_5293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[GACGGTTNACATCTCGGGGGCAGCATTCTNGACGCTCTTNGNGCGACACAGTGACGAGATAANNGAGAAATTGCTGAAAGCAACTATTNCAGCCTTGGTTGCACGAGTCACAACAATGATCGACAGTATTCGGCNCGGNGGAATCGGCAAAGCCTAGAGTACTGTGATNTTGAAGTNCCTNCTCTTTACTTCTGTCTGTGTGNAAGTAGGAGCGCTNTGTGAAGAGCGCAAGGGGNAGAGAAGCAAATAGTTGTNGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTGTGCGAATTGNAACGTATTTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTGTCGTNNAATTTTAACTCTAACATATGTANACGAATAATGTTTACCAAGTTTCAGTGTACATNTTGTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCCAGCAGGCAAGCCAAACACCTGGCGTTCATGTTGCTTGGTTTNATGCACTTGAAGCCAAAAAATCTTGNCGGCAGCTGGNCCATGGTAGAGAATCCACCAATAAGAACATANCTATATNCGGCNCATATTGGAATCACATTNGTTAGNAGGNGNGGTTAGAAACCAACCCATTTG]
[+] EMBL AL930031 [GACGGTTNACATCTCGGGGGCAGCATTCTNGACGCTCTTNGNGCGACACAGTGACGAGATAANNGAGAAATTGCTGAAAGCAACTATTNCAGCCTTGGTTGCACGAGTCACAACAATGATCGACAGTATTCGGCNCGGNGGAATCGGCAAAGCCTAGAGTACTGTGATNTTGAAGTNCCTNCTCTTTACTTCTGTCTGTGTGNAAGTAGGAGCGCTNTGTGAAGAGCGCAAGGGGNAGAGAAGCAAATAGTTGTNGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTGTGCGAATTGNAACGTATTTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTGTCGTNNAATTTTAACTCTAACATATGTANACGAATAATGTTTACCAAGTTTCAGTGTACATNTTGTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCCAGCAGGCAAGCCAAACACCTGGCGTTCATGTTGCTTGGTTTNATGCACTTGAAGCCAAAAAATCTTGNCGGCAGCTGGNCCATGGTAGAGAATCCACCAATAAGAACATANCTATATNCGGCNCATATTGGAATCACATTNGTTAGNAGGNGNGGTTAGAAACCAACCCATTTG]
consensusID : consensus_5293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[CAGATCCCCGAGTTAACTGTGATTGACTGGTCGCCACATATGGTGTGTGCTGCTGATCCGTGCAGTCCAGAAAACGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCAGTTTCGGTTCGGTGGATATCCAACAGAACAACCCCTTCCCCAACAGCAGAAAAGAAAGTACGGGCAGGGAGTGACGATTTACACCATTTATGGCAAACACGTCTCTCGTTCGAGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGGCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGAACACAGGACGGGTTTTGGAAAGGCTTTTTTGTNCACCTTTTGCGTATGGGTTCACCATCAGGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGGAGCGCTTGTTGAAGAGCGCAAGGCAGAGAAGCACAATCAGTCTGTGATGCGGGNCGAGCATCACTGGGAGAGNCTGCACA]
[+] EMBL AL930112 [CAGATCCCCGAGTTAACTGTGATTGACTGGTCGCCACATATGGTGTGTGCTGCTGATCCGTGCAGTCCAGAAAACGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCAGTTTCGGTTCGGTGGATATCCAACAGAACAACCCCTTCCCCAACAGCAGAAAAGAAAGTACGGGCAGGGAGTGACGATTTACACCATTTATGGCAAACACGTCTCTCGTTCGAGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGGCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGAACACAGGACGGGTTTTGGAAAGGCTTTTTTGTNCACCTTTTGCGTATGGGTTCACCATCAGGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGGAGCGCTTGTTGAAGAGCGCAAGGCAGAGAAGCACAATCAGTCTGTGATGCGGGNCGAGCATCACTGGGAGAGNCTGCACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5293#0 ----CCGGATCGGTGGACGTGTGTAAAGCGGGTGAGAAAGCGACCCCGATTTTTTTGTGT 56
consensus_5293#2 ------------------------------------------------------------
consensus_5293#1 GACGGTTNACATCTCGGGGGCAGCATTCTNGACGCTCTTNGNGCGACACAGTGACGAGAT 60
consensus_5293#0 TCTTTTTGCTTGCTTGCGTATCCGTGCTTATCCGTTGGTCACCAGCAAACCACCACTACG 116
consensus_5293#2 ------------------------------------------------------------
consensus_5293#1 AANNGAGAAATTGCTGAAAGCAACTATTNCAGCCTTGGTTGCACGAGTCACAACAATGAT 120
consensus_5293#0 CCAGCAACGCCAACTTCGACCTGACAGCAGATCGACACGACA-CTGTGATGGCACTGGCT 175
consensus_5293#2 ---------------------------CAGATCCCCGAGTTAACTGTGATTG-ACTGG-T 31
consensus_5293#1 CGACAGTATTCGGCNCGGNGGAATCGGCAAAGCCTAGAGTACTGTGATNTTGAAGTNCCT 180
** * * * ** * * * * *
consensus_5293#0 CGCCACCACTACTGC-TGC-TGCTGATCCGTGCGGTCCAGAAACCGGGTCCGGTCCACCT 233
consensus_5293#2 CGCCACATATGGTGTGTGC-TGCTGATCCGTGCAGTCCAGAAAACGGGTCCGGTCCACCT 90
consensus_5293#1 NCTCTTTACTTCTGTCTGTGTGNAAGTAGGAGCGCTNTGTGAAGAGCGCAAGGGGNAGAG 240
* * ** ** ** * * ** * ** * * ** *
consensus_5293#0 TTCCAA-TAAGGATTGGTGCTGGACGGCT-----GCCAGTTTCGGTTCGGCGGACTATTC 287
consensus_5293#2 TTCCAA-TAAGGATTGGTGCTGGACGGCT-----GC-AGTTTCGGTTCGGTGGATA--TC 141
consensus_5293#1 AAGCAAATAGTTGTNGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTG 300
*** ** * * *** *** * * * **** * * ** *
consensus_5293#0 CACCAGA-CCACCCCCTTCCCCAACCAGCAGAAAAGAAAGTACGGCGCAGGGAGTAA--- 343
consensus_5293#2 CAACAGA-ACAACCCCTTCCCCAAC-AGCAGAAAAGAAAGTACGG-GCAGGGAGTGA--- 195
consensus_5293#1 TGCGAATTGNAACGTATTTGGCAAA-TGCATGAAAGATGCGCCAAGATGTGCAGTCATCT 359
* * * ** *** *** ***** * * *** *
consensus_5293#0 -CGATTTACACCATTTAAGGCAAAAACAC--GTCTCTCGTT-CGGGCTGGTTCGTCAGGG 399
consensus_5293#2 -CGATTTACACCATTTATGGCAAA--CAC--GTCTCTCGTT-CGAGCTGGTTCGTCAGGG 249
consensus_5293#1 TCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTAC 419
* * * ** * * * * ** ** * * ** ** * **
consensus_5293#0 GAATGTTCGGACCGTTTGCCAT----CGTTACGGGCAC--ATCTCGGGCGTTTCGGACGC 453
consensus_5293#2 GAATGTTCGGACCGTTTGGCAT----CGTTACGGGCAC--ATCTCGGGCGTTTCGGACGC 303
consensus_5293#1 ATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTGTCGT 479
******* ** * * * ** *** * ***** * **
consensus_5293#0 GC----TTCGTGCGA-CACA---GGACGGGTTTTG---GAAAGGCTTTTTTTCCACCTTT 502
consensus_5293#2 GC----TTCGTGCGAACACA---GGACGGGTTTTG---GAAAGGCTTTTTTGTNCACCTT 353
consensus_5293#1 NNAATTTTAACTCTAACATATGTANACGAATAATGTTTACCAAGTTTCAGTGTACATNTT 539
** * * ** * *** * ** * * ** * **
consensus_5293#0 TTGCTT-----------GGTTCAC-CATCAG-CAACG--TCGCGTTTGGCCGGAGAATCG 547
consensus_5293#2 TTGCGTA--------TGGGTTCAC-CATCAGGCAACG--TCGCGTTTGGCCGGAGAATCG 402
consensus_5293#1 GTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCCAGCAGGCAAGCCA 599
** * *** * *** * * * ** ** ** * *
consensus_5293#0 CAAAGCCTGCTTTG-TGACATTTGTCCTTCT----TTTACTCTGTCTGTGCCAAGTGG-A 601
consensus_5293#2 CAAAGCCTGCTTTGGTGACATTTGTCCTTCT----TTTACTCTGTCTGTGCCAAGTGGGA 458
consensus_5293#1 AACACCTGGCGTTCATGTTGCTTGGTTTNATGCACTTGAAGCCAAAAAATCTTGNCGGCA 659
* * * ** ** ** *** * * ** * * * ** *
consensus_5293#0 GC--GCTTGT-GAAGAGCGCAAGGCA-AGAGAAGCA-AATAGT-TGTGATGCGGGAGAGA 655
consensus_5293#2 GC--GCTTGTTGAAGAGCGCAAGGCAGAGAAGCACA-ATCAGTCTGTGATGCGGGNCGAG 515
consensus_5293#1 GCTGGNCCATGGTAGAGAATCCACCA-ATAAGAACATANCTATATNCGGCNCATATTGGA 718
** * * * **** ** * * ** * * * * *
consensus_5293#0 --------TAG---TGGGAGAGT-TGCAAATTGGGAAGTGATTGTGCGAATTGCAACGTA 703
consensus_5293#2 --------CATCACTGGGAGAGNCTGCACA------------------------------ 537
consensus_5293#1 ATCACATTNGTTAGNAGGNGNGGTTAGAAACCAACCCATTTG------------------ 760
** * * * * *
consensus_5293#0 TTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGT 763
consensus_5293#2 ------------------------------------------------------------
consensus_5293#1 ------------------------------------------------------------
consensus_5293#0 GTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTG 823
consensus_5293#2 ------------------------------------------------------------
consensus_5293#1 ------------------------------------------------------------
consensus_5293#0 ATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTTGTGTTAATTTTAACTCTAAATA 883
consensus_5293#2 ------------------------------------------------------------
consensus_5293#1 ------------------------------------------------------------
consensus_5293#0 TGTAACGAATAATGTTTACCCAAGTTTAGTGTAAATTTGTGATTAGCTTTCTTTAGGTAC 943
consensus_5293#2 ------------------------------------------------------------
consensus_5293#1 ------------------------------------------------------------
consensus_5293#0 GTTCATTGCGCTTTGCTTTACGCCAGCAGGCAAGCAAACACCTGGCGTTATGTGCTGGTT 1003
consensus_5293#2 ------------------------------------------------------------
consensus_5293#1 ------------------------------------------------------------
consensus_5293#0 TA 1005
consensus_5293#2 --
consensus_5293#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||