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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 899 fasta sequence
[AGGCAGAATCGGCACGAGGACATTTTAAAAAATATATGTATGCAGCTAAATCGTTCAAATGGTTAAAGCAAAAACCCCAAAAATTACATTATATAGTGACAAAGCTAAATGTCAGCTCATGGAGACTTTACAGGATTATGAAGTTGTTTTCTATGATGATACAAAAATTATACTTAGTTCGACGAATAATGAGATAAAAATGATTGATGGAAGTGGCAAGGTTTATCGAGGATTGGAATCCATATCAGCTATAAACATTACATATCTACATCATTTTCAAGAAACCCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATTGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCAGGTACAATTACAATGTAAAAACTATGTATCGATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAACAATACAGTCTTTCCCCGAAGTTTACAAGGTTTTCCGATTATAAACTCAAGAACAGAAGGAACACTGTCATTGAAACTTAATCGGATTACATNGTTCCCGCAGTCNTTTGCGATTACCAAATTTCGGCAAGATCCCCGGGATATTCGGTCACAAAACGTTTTTCCAAGGTTAATTCGATCCGCAAATCTTTTGCGAATTGGAATTCCCCGGAAAATTCCTTCAAAAGTTTTCCCGCAAAGCTCTCTGAATTCNTATTCGAT]
[+] EMBL BX467557 [AGGCAGAATCGGCACGAGGACATTTTAAAAAATATATGTATGCAGCTAAATCGTTCAAATGGTTAAAGCAAAAACCCCAAAAATTACATTATATAGTGACAAAGCTAAATGTCAGCTCATGGAGACTTTACAGGATTATGAAGTTGTTTTCTATGATGATACAAAAATTATACTTAGTTCGACGAATAATGAGATAAAAATGATTGATGGAAGTGGCAAGGTTTATCGAGGATTGGAATCCATATCAGCTATAAACATTACATATCTACATCATTTTCAAGAAACCCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATTGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCAGGTACAATTACAATGTAAAAACTATGTATCGATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAACAATACAGTCTTTCCCCGAAGTTTACAAGGTTTTCCGATTATAAACTCAAGAACAGAAGGAACACTGTCATTGAAACTTAATCGGATTACATNGTTCCCGCAGTCNTTTGCGATTACCAAATTTCGGCAAGATCCCCGGGATATTCGGTCACAAAACGTTTTTCCAAGGTTAATTCGATCCGCAAATCTTTTGCGAATTGGAATTCCCCGGAAAATTCCTTCAAAAGTTTTCCCGCAAAGCTCTCTGAATTCNTATTCGAT]
[+] EMBL BX609743 [ ATGGAGACTTTACAGGATTATGAAGTTGTTTTCTATGATGATACAAAAATTATACTTAGTTCGACGAATAATGAGATAAAAATGATTGATGGAAGTGGCAAGGTTTATCGAGGATTGGAATCCATATCAGCTATAAACATTACATATCTACATCATTTTCAAGAAACCCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATTGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCAGGTACAATTACAATGTAAAAACTATGTATC ATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACA ]
consensusID : consensus_5295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence
[GAGTNAAACCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCGTGTACAATTACAATGTAAAAACTATGTATCATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAAAATACAGTCTTTCCCCGAGTTACAAGGTTTTCCGATATAACTCAAGACAGAAGGACACTGTCATGAAACTAATCGATAATGTGCCGCAGTCTTGCGATACAAATTCGCAGATCCCGGTATCGTCAACGTTTCAAAGTATCGTTCCGCAGTCTTGCGATTGATTCCCGCAGATTCATAAAAGTGTCCCGCAGTCTTGAGTTCTATAGTAA-CCTGTATAATATTCCCAAGCAACATTTTTATTGTACTTCTATCATCAATGCGA-CG--TGTTTTAGATAGTTGAATAAAAAATTTAACTGTACTGATTATTCATGCTAATTGTTACATTATAAGTACCAAAAAGTCTTATTTTGGTAAATCATTACACTGTGGTTCGCGGACAAAAGCTATCGTAGTTTAAAAACTCTTAAAATGGAAATTAATTTCGATTAACATTTTTAATAAGCAGAAAATAAAACATCTTTAAATCATATTTTATAT]
[+] EMBL AL930065 [GAGTNAAACCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCGTGTACAATTACAATGTAAAAACTATGTATCATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAAAATACAGTCTTTCCCCGAGTTACAAGGTTTTCCGATATAACTCAAGACAGAAGGACACTGTCATGAAACTAATCGATAATGTGCCGCAGTCTTGCGATACAAATTCGCAGATCCCGGTATCGTCAACGTTTCAAAGTATCGTTCCGCAGTCTTGCGATTGATTCCCGCAGATTCATAAAAGTGTCCCGCAGTCTTGAGTTCTATAGTAA CCTGTATAATATTCCCAAGCAACATTTTTATTGTACTTCTATCATCAATGCGA CG TGTTTT ]
[+] EMBL BM620849 [ CAATTACAATGTAAAAACTATGTATCATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAATTAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAAAATACAGTCTTTCCCCGAGTTACAAGGTTTTCCGATAGAACTCAAGACAGAAGGACACTGTCATGAATCTAATCGATAATGTGCCGCAGTCTTGCGATACAAATTCGCAGATCCCGGTATCGTCAACGTTTTCAAGTATCGTTCCGCAGTCTTGCGATTGATTCCCGCAGATTCATAAAAGTGTCCCGCAGTCTTGAGTTCTATAGTAACCCTGTATAATATTCCCAAGCAACATTTTTATTGTACTTCTATCATCAATGCGACCGTTTGTTTTAGATAGTTGAATAAAAAATTTAACTGTACTGATTATTCATGCTAATTGTTACATTATAAGTACCAAAAAGTCTTATTTTGGTAAATCATTACACTGTGGTTCGCGGACAAAAGCTATCGTAGTTTAAAAACTCTTAAAATGGAAATTAATTTCGATTAACATTTTTAATAAGCAGAAAATAAAACATCTTTAAATCATATTTTATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5295#0 AGGCAGAATCGGCACGAGGACATTTTAAAAAATATATGTATGCAGCTAAATCGTTCAAAT 60
consensus_5295#1 ------------------------------------------------------------
consensus_5295#0 GGTTAAAGCAAAAACCCCAAAAATTACATTATATAGTGACAAAGCTAAATGTCAGCTCAT 120
consensus_5295#1 ------------------------------------------------------------
consensus_5295#0 GGAGACTTTACAGGATTATGAAGTTGTTTTCTATGATGATACAAAAATTATACTTAGTTC 180
consensus_5295#1 ------------------------------------------------------------
consensus_5295#0 GACGAATAATGAGATAAAAATGATTGATGGAAGTGGCAAGGTTTATCGAGGATTGGAATC 240
consensus_5295#1 ------------------------------------------------------------
consensus_5295#0 CATATCAGCTATAAACATTACATATCTACATCATTTTCAAGAAACCCGAGAACATTGCCA 300
consensus_5295#1 -------------------------------------GAGTNAAACCGAGAACATTGCCA 23
* ** ***************
consensus_5295#0 TAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAAT 360
consensus_5295#1 TAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAAT 83
************************************************************
consensus_5295#0 TGGAAGACGTCAAGGGAACTTCTGTGGCAGCATTGCTTTAAGGAAAGACGTGTTTAATTA 420
consensus_5295#1 TGGAAGACGTCAAGGGAACTTCTGTGGCAGCAT-GCTTTAAGGAAAGACGTGTTTAATTA 142
********************************* **************************
consensus_5295#0 CCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCAGGT 480
consensus_5295#1 CCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCGTGT 202
******************************************************** **
consensus_5295#0 ACAATTACAATGTAAAAACTATGTATCGATACTAAGGTGCTGATTAGAGATTTAACCAAA 540
consensus_5295#1 ACAATTACAATGTAAAAACTATGTATC-ATACTAAGGTGCTGATTAGAGATTTAACCAAA 261
*************************** ********************************
consensus_5295#0 AGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCC 600
consensus_5295#1 AGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCC 321
************************************************************
consensus_5295#0 TACGATGAAACAAAAAAAAAATCACAGAACCATAATAACAATACAGTCTTTCCCCGAAGT 660
consensus_5295#1 TACGATGAAACAAAAAAAAAATCACAGAACCATAATAA-AATACAGTCTTTCCCCGAG-- 378
************************************** ******************
consensus_5295#0 TTACAAGGTTTTCCGATTATAAACTCAAGAACAGAAGGAACACTGTCATTGAAACTTAAT 720
consensus_5295#1 TTACAAGGTTTTCCGAT-ATAA-CTCAAGA-CAGAAGGA-CACTGTCAT-GAAACT-AAT 432
***************** **** ******* ******** ********* ****** ***
consensus_5295#0 CGGATTACATNGTTCCCGCAGTCNTTTGC----GATTACCAAATTTCGGCAAGATCCCCG 776
consensus_5295#1 CG-ATAATGTG----CCGCAGTCTTGCGATACAAATTCGCAGATCCCGGTATCGTCAACG 487
** ** * * ******** * * *** ** ** *** * ** **
consensus_5295#0 GGATATTCGGTCACAAAACGTTTTTCCAAGGTTAATTC-----GATCCGCAAA--TCTTT 829
consensus_5295#1 TTTCAAAGTATCGTTCCGCAGTCTTGCGA--TTGATTCCCGCAGATTCATAAAAGTGTCC 545
* ** * * ** * * ** **** *** * *** * *
consensus_5295#0 TGCGAATTGGAATTCCCCGGAAAATTCCTTCAAAAGTTTTCCCGCAAAGCTCTC--TGAA 887
consensus_5295#1 CGCAGTCTTGAGTTCTATAGTAA--CCTGTATAATATTCCCAAGCAACATTTTTATTGTA 603
** * ** *** * ** * * ** ** * **** * * ** *
consensus_5295#0 TTCNTAT--TCGAT---------------------------------------------- 899
consensus_5295#1 CTTCTATCATCAATGCGACGTGTTTTAGATAGTTGAATAAAAAATTTAACTGTACTGATT 663
* *** ** **
consensus_5295#0 ------------------------------------------------------------
consensus_5295#1 ATTCATGCTAATTGTTACATTATAAGTACCAAAAAGTCTTATTTTGGTAAATCATTACAC 723
consensus_5295#0 ------------------------------------------------------------
consensus_5295#1 TGTGGTTCGCGGACAAAAGCTATCGTAGTTTAAAAACTCTTAAAATGGAAATTAATTTCG 783
consensus_5295#0 -----------------------------------------------------
consensus_5295#1 ATTAACATTTTTAATAAGCAGAAAATAAAACATCTTTAAATCATATTTTATAT 836
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||