|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[CGACCCACGCGTCCGAAGTTTTCTAATTGGAAAACTGGTGGAAAACGAGCGAAAGAGAAGGTTGCAGATAGGGATCAGAACAATTTACCGGCAGGTAAGCGAAACACACTTACCCATTTTGAATTTAATACATTTGCGGATAGAAAAACTAAAGCATTTTAACGATACACTAATGTTAAGCTTTGACATACGTAAAGCAACAGAAAGCGCACAAACAAAACTACCACAACGAGGCCAACGAGGCCGTCAAAGTAGGCCATTGCAAATGGAGACGTTTAGCATCGTGTAAATAATGTGGTGTGTGCCACACACACATACCAAACCCCCAAAAGGTTGTGTAGGCTTAAAACGATCGTACACTCTCCTCGTGCTCGTCTGTTGCTCGTAGAATGTCCTGAACCAGATCAAATAGGAAAAACCGAGAAAAAAGAATACGGTTATCACTAGTGATTTATCTTCTCATTCTTGATGTTTGTGGTACTCCGGTACGTGAGAACGGGGAGGAGAAAGGATAAGGCTTTTGAAATTGCTCGAAACCGATCGTGTAATTCTGGTGCTGTGTTTAAAGCGTAAATGTAAGTAGCTTCTACTGAGGGGAACTAACTTAAAGGGAGAGAGAGATA]
[+] EMBL BM586053 [CGACCCACGCGTCCGAAGTTTTCTAATTGGAAAACTGGTGGAAAACGAGCGAAAGAGAAGGTTGCAGATAGGGATCAGAACAATTTACCGGCAGGTAAGCGAAACACACTTACCCATTTTGAATTTAATACATTTGCGGATAGAAAAACTAAAGCATTTTAACGATACACTAATGTTAAGCTTTGACATACGTAAAGCAACAGAAAGCGCACAAACAAAACTACCACAACGAGGCCAACGAGGCCGTCAAAGTAGGCCATTGCAAATGGAGACGTTTAGCATCGTGTAAATAATGTGGTGTGTGCCACACACACATACCAAACCCCCAAAAGGTTGTGTAGGCTTAAAACGATCGTACACTCTCCTCGTGCTCGTCTGTTGCTCGTAGAATGTCCTGAACCAGATCAAATAGGAAAAACCGAGAAAAAAGAATACGGTTATCACTAGTGATTTATCTTCTCATTCTTGATGTTTGTGGTACTCCGGTACGTGAGAACGGGGAGGAGAAAGGATAAGGCTTTTGAAATTGCTCGAAACCGATCGTGTAATTCTGGTGCTGTGTTTAAAGCGTAAATGTAAGTAGCTTCTACTGAGGGGAACTAACTTAAAGGGAGAGAGAGATA]
consensusID : consensus_532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[TTTTTTTTAACGGTTGAATCCATTTCTTTCTCCAATTTATTTAAATTCGTTTTTTGAATGAGAATCACAACTCAATGTCACTTTGTATGTACAGCTATGGTACTGCAGACTTCTTTTAAATACAGAGTTCCTTGTTTCCCCCCTCAATTCCATCTTCCACTCACGTTGAGCGATTGTTCATCGCACAATCAGTTCTTAATACGCCTTCTTTCTCTCTTTCTCTCTAAGCTAGTTCCCCCTCAGTAGAAGCTACTTACATTTACGCTTTAAA]
[+] EMBL AGA280154 [TTTTTTTTAACGGTTGAATCCATTTCTTTCTCCAATTTATTTAAATTCGTTTTTTGAATGAGAATCACAACTCAATGTCACTTTGTATGTACAGCTATGGTACTGCAGACTTCTTTTAAATACAGAGTTCCTTGTTTCCCCCCTCAATTCCATCTTCCACTCACGTTGAGCGATTGTTCATCGCACAATCAGTTCTTAATACGCCTTCTTTCTCTCTTTCTCTCTAAGCTAGTTCCCCCTCAGTAGAAGCTACTTACATTTACGCTTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_532#0 CGACCCACGCGTCCGAAGTTTTCTAATTGGAAAACTGGTGGAAAACGAGCGAAAGAGAAG 60
consensus_532#1 ------------------------------------------------------------
consensus_532#0 GTTGCAGATAGGGATCAGAACAATTTACCGGCAGGTAAGCGAAACACACTTACCCATTTT 120
consensus_532#1 ---------------------TTTTTTTTAACGGTTGAATCCATTTCTTTCTCCAATTT- 38
*** * * * * * * * ** ****
consensus_532#0 GAATTTAATACATTTGCGGATAGAAAAACTAAAGCATTTTAACGATACACTA-ATGTTAA 179
consensus_532#1 -ATTTAAATTCGTTTTTTGAATGAGAATC----ACAACTCAATGTCACTTTGTATGTACA 93
* ** *** * *** ** ** ** * ** * ** * ** * **** *
consensus_532#0 GCTTTGACATACGTAAAGCAACAGAAAGCGCACAAACA-AAACTACCACAACGAGGCCAA 238
consensus_532#1 GCTATGGTA---------CTGCAGACTTCTTTTAAATACAGAGTTCCTTGTTTCCCCCCT 144
*** ** * * **** * *** * * * * ** **
consensus_532#0 CGAGGCCGTCAAAGTAGGCCATTGCAAATGGAGACGTTTAGCATCGTGTAAATAATGTGG 298
consensus_532#1 CAATTCCATCTT------CCACT-CACGTTGAGCGATTGTTCATCGCACAATCAGTTCTT 197
* * ** ** *** * ** * *** ** ***** ** * *
consensus_532#0 TGTGTGCCACACACACATACCAAACCCCCAAAAGGTTGTGTAGGCTTAAAACGATCGTAC 358
consensus_532#1 AATACGCCTTCTTTCTCTCTTTCTCTCTAAGCTAGTTCCCCCTCAGTAGAAGCTACTTAC 257
* *** * * * * *** ** ** * ***
consensus_532#0 ACTCTCCTCGTGCTCGTCTGTTGCTCGTAGAATGTCCTGAACCAGATCAAATAGGAAAAA 418
consensus_532#1 ATTTACGCTTTAAA---------------------------------------------- 271
* * * *
consensus_532#0 CCGAGAAAAAAGAATACGGTTATCACTAGTGATTTATCTTCTCATTCTTGATGTTTGTGG 478
consensus_532#1 ------------------------------------------------------------
consensus_532#0 TACTCCGGTACGTGAGAACGGGGAGGAGAAAGGATAAGGCTTTTGAAATTGCTCGAAACC 538
consensus_532#1 ------------------------------------------------------------
consensus_532#0 GATCGTGTAATTCTGGTGCTGTGTTTAAAGCGTAAATGTAAGTAGCTTCTACTGAGGGGA 598
consensus_532#1 ------------------------------------------------------------
consensus_532#0 ACTAACTTAAAGGGAGAGAGAGATA 623
consensus_532#1 -------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||