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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1200 fasta sequence
[AAACTAGTGAACTGTCTCACTGTTTCGAATAAGCTTTATTNATAACGCATTCTTAACCAGTGATGACACAATGTCTTTTTACACTTATTTTATGTTTACGACTAATATTGACCTACTTTCATTATGTGGTTGCTAACCTTCCTGTTTTGAGGTTTGTTCATCAAAATATAAAGTCAATGTCCGGTTGTTTGTTTGTCACTTGGTGTTATTGTTGCGCAATCGTTTTGCAGCCGTTCTGAGTTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCTTCCTG-TCCTACGGTTTGTGTGTGCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACCTGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGATTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTGATCCGGTTTTTGGTTAGTAACGATTGTATAACTGCTTAGGTGGCTCTATAGGTTGGTTGAACTGTTAGCAGTAAATCTGCTACACAAGTGTTGAAACGCGTAACGGAAAAACGCTACGAAGCTCCACAGCCGTAGCGTGAGTGAAAGAAAGCCATCTGACGACATACTCAAATCGGAGAACAGTCCCACGAAGGGTAAATCGTCAAATAACTATTACCTCGAAAATAGTTAAAAACGACTCCAAAGAAAACAGCTAGTGCAGATATTAGCTGATCTAAGCCGATTTACGATACTAATCGAGCATCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAGTCCTACAAAAGTGCAATCCGCACGACTCATGACTCACGACGAGAACGCAAATTCATCGCTGCAAGCAAGATTAAGATCATCGCAGATTCATTCGAAATAACTACGAGCCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTATAACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTTATTACAACAAAACAGGTATTCAAGTAAGCAAACTTGAATCCAGGTGAGTCGTTCCAATTATTAATCAATTAAAACTTACGAAATATTGCAACTCGGAAATCATTTGATTTGTCCAAAATGTCGAAATATTTCGTTTCTAATCCAAACGGCCGCTGCCGCCTGTGTACGGAACAGGATGGAGACGTGCGGCATATAATCGCTG]
[-] EMBL BX620965 [AAACTAGTGAACTGTCTCACTGTTTCGAATAAGCTTTATTNATAACGCATTCTTAACCAGTGATGACACAATGTCTTTTTACACTTATTTTATGTTTACGACTAATATTGACCTACTTTCATTATGTGGTTGCTAACCTTCCTGTTTTGAGGTTTGTTCATCAAAATATAAAGTCAATGTCCGGTTGTTTGTTTGTCACTTGGTGTTATTGTTGCGCAATCGTTTTGCAGCCGTTCTGAGTTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCTTCCTG TCCTACGGTTTGTGTGTGCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACCTGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGATTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTCATCCGGTTTTTGGTTAGTAACGATTGTATAACTGCTTAGGTGGCTCTATAGGTTGGTTGAACTGTTAGCAGTAAATCTGCTACACAAGTGTTGTAACGCGTAACGGAAAAACACTACGAAGCTCCACAGTCGTAGCGTGAGTGAAAGAAAGCCATCTGACGACACACTCAAATCGGAGAACAGTCCCACGAAGGGTAAATCGTCAAATAACTATTACCTCGAAAATAGTTAAAAACGACNCCGAAGAAAACAGCTAG ]
[+] EMBL CNS08H3O [ gACTGTCTCACTGTTTCGAATAAGCTTTATTTATAACGCATTCTTAAACAGTGATGACACAATGTCTTTTTACACTTATTTTATGTTTACGACTAATATTGACCTACTTTCATTATGTGGTTGCTAACCTTCCTGTTTTGAGGTTTGTTCATCAAAATATAAAGTCAGTTTCCGGTTGTTTGTTTGTCGCTTGGTGTTATTGTTGCGCAATCGTTTTGCAGCCGTTCTGAGTTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCTTCCTG TCCTACGGTTTGTGTGTCCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACCTGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGATTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTGATCCGGTTTTTGGTTAGTAACGATTGTATAACTGCTTAGGTGGCTCTATAGGTTGGTTGAACTGTTAGCAGTAAATCTGCTACACAAGTTTTGAAACGCGTAACGGAAAAACGCTACGAAGCTCCACAGCCGTAGCGTGAGTTAAAGAAAGCCATCTGACGACATACTCAAATCGGAGAACAGTCCCACGAAGGGTAAATCGTCAAATAACTATTACCTCGAAAATAGTTAAAAACGACTCCAAAGAAAACAGCTAGTGCAGATATTAGCTGATCTAAGCCGATTTACGATACTAATCGAGCATCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAGTCCTACAAAAGTGCAATCCGCACGACTCATGACTCACGACGAGAACGCAAATTCATCGCTGCAAGCAAGATTAAGATCATCGCAGATTCATTCGAAATAACTACGAGCCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTATAACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTTATT ]
[-] EMBL CNS08H3N [ GTTTTGCAGCCGTTCTGAGTTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCTTCCTGTTCCTACGGTTTGTGTGTGCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACCTGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGATTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTGATCCGGTTTTTGGTTAGTAACGATTGTATAACTGCTTAGGTGGCTCTATAGGTTGGTTGAACTGTTAGCAGTAAATCTGCTACACAAGTGTTGAAACGCGTAACGGAAAAACGCTACGAAGCTCCACAGCCGTAGCGTGAGTGAAAGAAAGCCATCTGACGACATACTCAAATCGGAGAACAGTCCCACGAAGGGTAAATCGTCAAATAACTATTACCTCGAAAATAGTTAAAAACGACTCCAAAGAAAACAGCTAGTGCAGATATTAGCTGATCTAAGCCGATTTACGATACTAATCGAGCATCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAGTCCTACAAAAGTGCAATCCGCACGACTCATGACTCACGACGAGAACGCAAATTCATCGCTGCAAGCAAGATTAAGATCATCGCAGATTCATTCGAAATAACTACGAGCCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTATAACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTTATTACAACAAAACAGGTATTCAAGTAAGCAAACTTGAATCCAGGTGAGTCGTTCCAATTATTAATCAATTAAAACTTACGAAATATTGCAACTCGGAAATCATTTGATTTGTCCAAAATGTCGAAATATTTCGTTTCTAATCCAAACGGCCGCTGCCGCCTGTGTACGGAACAGGATGGAGACGTGCGGCATATAATCGCTG]
consensusID : consensus_5322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 913 fasta sequence
[TGGCGGGGGCGCGTNTCTGTCCGCGTGTTTTTTTGTTTTTCGCTGGGTCGTGTCTNGCGTNTNNCCCNGTNTCCGGCCGNGTTTTGGTGTGTTNNNGCTNGTCTTGGCTGGGTTAGGTTTTTCTGTTCTCCACCTGTGGATTNTGGTGGCTGGCTCCTATGTGGTAGTTTGGTNTTTTGTAGTTTGGGTANTGTTTTTTCCGGGTTTANGCNGGCGATTTGAGNTGTGGACGTGCCTTTTTNTTGATGTGGCTTTCATACTTCTGTTTATGTTAATGTCATCCGGGTTGTTGGTTATGTNANCGATTGTATAACTGCTTAGGTGGTCTCTATAGTTTGGTTGAACTGTTANCCTATGTANAATCTGCGNACACATGGTGTTGTAACGCGTAAGCGGGAGNNGTCACACTACGAAGCTCCACAGTGCGTAGCGTGAGTGAAAGAGTAGCCATGCTGTCTGACTACACTCNAATCGGAGTACTATGTCCCATCGAAGGNTGAATATCNGTCATAATGACTATTACNNTGCGGAAAATAGTTAANTACGACTGCCGAAGTAAACTAGCTAGTGCTAGATATGAGCTGATNTAAGCCGATTTACGATACATAATCGAGCTGTCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAAGTCCTACNATAAGTGCAATCCGCACGACTCATGTACTCACGACGTAGAACGCAAATTCATCGCTGCAAGNCAAGATTAAGATCATCGCAGTATTCATTCGAATATAANTACGCACCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTGTANACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTCTATTACAACAAAACAGTATTCAAGTAAGCAAACTTGAATCCAGTTAACCTCGGGATTCTGC]
[-] EMBL AL930620 [TGGCGGGGGCGCGTNTCTGTCCGCGTGTTTTTTTGTTTTTCGCTGGGTCGTGTCTNGCGTNTNNCCCNGTNTCCGGCCGNGTTTTGGTGTGTTNNNGCTNGTCTTGGCTGGGTTAGGTTTTTCTGTTCTCCACCTGTGGATTNTGGTGGCTGGCTCCTATGTGGTAGTTTGGTNTTTTGTAGTTTGGGTANTGTTTTTTCCGGGTTTANGCNGGCGATTTGAGNTGTGGACGTGCCTTTTTNTTGATGTGGCTTTCATACTTCTGTTTATGTTAATGTCATCCGGGTTGTTGGTTATGTNANCGATTGTATAACTGCTTAGGTGGTCTCTATAGTTTGGTTGAACTGTTANCCTATGTANAATCTGCGNACACATGGTGTTGTAACGCGTAAGCGGGAGNNGTCACACTACGAAGCTCCACAGTGCGTAGCGTGAGTGAAAGAGTAGCCATGCTGTCTGACTACACTCNAATCGGAGTACTATGTCCCATCGAAGGNTGAATATCNGTCATAATGACTATTACNNTGCGGAAAATAGTTAANTACGACTGCCGAAGTAAACTAGCTAGTGCTAGATATGAGCTGATNTAAGCCGATTTACGATACATAATCGAGCTGTCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAAGTCCTACNATAAGTGCAATCCGCACGACTCATGTACTCACGACGTAGAACGCAAATTCATCGCTGCAAGNCAAGATTAAGATCATCGCAGTATTCATTCGAATATAANTACGCACCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTGTANACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTCTATTACAACAAAACAGTATTCAAGTAAGCAAACTTGAATCCAGTTAACCTCGGGATTCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5322#0 AAACTAGTGAACTGTCTCACTGTTTCGAATAAGCTTTATTNATAACGCATTCTTAACCAG 60
consensus_5322#1 ------------------------------------------------------------
consensus_5322#0 TGATGACACAATGTCTTTTTACACTTATTTTATGTTTACGACTAATATTGACCTACTTTC 120
consensus_5322#1 ------------------------------------------------------------
consensus_5322#0 ATTATGTGGTTGCTAACCTTCCTGTTTTGAGGTTTGTTCATCAAAATATAAAGTCAATGT 180
consensus_5322#1 ------------------------------------------------TGGCGGGGGCGC 12
* * *
consensus_5322#0 CCGGTTGTTTGTTTGTCACTTGGTGTTATTGTTGCGCAATCGTTTTGCAGCCGTTCTGAG 240
consensus_5322#1 GTNTCTGTCCGCGTGTTTTTTTGT-TTTTCGCTGGGTCGT-GTCTNGC-GTNTNNCCCNG 69
*** * *** ** ** ** * * ** * * ** * ** * * *
consensus_5322#0 TTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCT 300
consensus_5322#1 TNTCCGGCCGNGTTT--TGGTGTGTTNNNGCTN-GTCTTGGCTGGGTTAGGTTTTTCTGT 126
* * * ** **** ** * * * * ** ** * * * ** * *
consensus_5322#0 TCCTGTCCTACGGTTTGTGTGTGCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACC 360
consensus_5322#1 TCTCCACCTGTGGATTNTG-GTGGCTGGCTCCTAT---GTGGTAG---TTTGGTNTTTTG 179
** *** ** ** ** *** ** *** ****** ** ** *
consensus_5322#0 TGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGA 420
consensus_5322#1 TAGTTTGGGTANTGTTTTTTCCGGGT------TTANGCNGGCGATTTGAGNTGTGGACGT 233
* **** * ** * * * * *** * * *** * * ***
consensus_5322#0 ----TTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTGATCCGGTT 476
consensus_5322#1 GCCTTTTTNTTGATGTGGCTTTCATACTTCTGTTTA-TGTTAATGTCATCCG----GGTT 288
** * **** ******** * ** * * * ******* ** * ****
consensus_5322#0 TTTGGTTAG--TAACGATTGTATAACTGCTTAGGTGG-CTCTATAGGTTGGTTGAACTGT 533
consensus_5322#1 GTTGGTTATGTNANCGATTGTATAACTGCTTAGGTGGTCTCTATAGTTTGGTTGAACTGT 348
******* * *********************** ******** *************
consensus_5322#0 TAGC----AGTAAATCTGC-TACACA-AGTGTTGAAACGCGTAA-CGGAAAAA----CGC 582
consensus_5322#1 TANCCTATGTANAATCTGCGNACACATGGTGTTGTAACGCGTAAGCGGGAGNNGTCACAC 408
** * ******* ***** ****** ********* *** * * *
consensus_5322#0 TACGAAGCTCCACAGC-CGTAGCGTGAGTGAAAGAA-AGCCAT-CTGAC-GAC-ATACTC 637
consensus_5322#1 TACGAAGCTCCACAGTGCGTAGCGTGAGTGAAAGAGTAGCCATGCTGTCTGACTACACTC 468
*************** ****************** ****** *** * *** * ****
consensus_5322#0 AAATCGGAGAACA--GTCCCA-CGAAGGGTAAAT---CGTCA-AATAACTATTACCTCG- 689
consensus_5322#1 NAATCGGAGTACTATGTCCCATCGAAGGNTGAATATCNGTCATAATGACTATTACNNTGC 528
******** ** ****** ****** * *** **** *** ******** *
consensus_5322#0 --AAAATAGTTAAAAACGACT-CCAAAGAAAAC-AGCTAGTGC-AGATATTAGCTGATCT 744
consensus_5322#1 GGAAAATAGTTAANTACGACTGCCGAAGTAAACTAGCTAGTGCTAGATATGAGCTGATNT 588
*********** ****** ** *** **** ********* ****** ******* *
consensus_5322#0 AAGCCGATTTACGATAC-TAATCGAGC-ATCGAACACCGCATCAAGAGATAGCGGAAGGA 802
consensus_5322#1 AAGCCGATTTACGATACATAATCGAGCTGTCGAACACCGCATCAAGAGATAGCGGAAGGA 648
***************** ********* *******************************
consensus_5322#0 CAAAAA-GTCCTACAA-AAGTGCAATCCGCACGACTCATG-ACTCACGACG-AGAACGCA 858
consensus_5322#1 CAAAAAAGTCCTACNATAAGTGCAATCCGCACGACTCATGTACTCACGACGTAGAACGCA 708
****** ******* * *********************** ********** ********
consensus_5322#0 AATTCATCGCTGCAAGC-AAGATTAAGATCATCGCAG-ATTCATTCGAA-ATAACTACGA 915
consensus_5322#1 AATTCATCGCTGCAAGNCAAGATTAAGATCATCGCAGTATTCATTCGAATATAANTACGC 768
**************** ******************* *********** **** ****
consensus_5322#0 GCCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTATAA-CAACATCTTACAAGGGAAC 974
consensus_5322#1 ACCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTGTANACAACATCTTACAAGGGAAC 828
*********************************** ** *******************
consensus_5322#0 GCGTCCGCTGAATCACCGAAAGT-TATTACAACAAAACAGGTATTCAAGTAAGCAAACTT 1033
consensus_5322#1 GCGTCCGCTGAATCACCGAAAGTCTATTACAACAAAACAG-TATTCAAGTAAGCAAACTT 887
*********************** **************** *******************
consensus_5322#0 GAATCCAGGTGAGTCGTTCCAATTATTAATCAATTAAAACTTACGAAATATTGCAACTCG 1093
consensus_5322#1 GAATCCAGTTAA--CCTCGGGATTCTGC-------------------------------- 913
******** * * * * *** *
consensus_5322#0 GAAATCATTTGATTTGTCCAAAATGTCGAAATATTTCGTTTCTAATCCAAACGGCCGCTG 1153
consensus_5322#1 ------------------------------------------------------------
consensus_5322#0 CCGCCTGTGTACGGAACAGGATGGAGACGTGCGGCATATAATCGCTG 1200
consensus_5322#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||