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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 912 fasta sequence
[GACTGTGATATGTCATCGCGNGGAGTACNACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACAAGCGTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTTTAAATTACAATCGTTATTAAATGATGGATGTAAATTCGCAAGTTCAACACACATAAACACACCCGTAAATTCACCCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGATAGCATATTGATCCGAATCTGACCGAGCCAATACTCCCCATCATTACCATCACCACCACCACCACCACCATCGTTCGCTGTCTGTGAATATACGTTTTAATGTTACAGTGGATTTAAACGACTAGCGTGGATGAACATTACTACAAGAGAGTTACAAAACTTCATGACAGTTGCGAAAAGTATTGCGATCGTGGCATACAAAAACACACACACATTCATTCAGGCTATTCGG-AACACTTCACTACCAAGAGAGCGTAAGCATTTACGCTT-AAANGGGTGCATCAGTTCTTATCCCAGCAAAAAAAAAATGGAAGAAAATTGAAAAAAAGTAACCATTCAGTGAAAGGAAGAAAATACAGA]
[+] EMBL BX622610 [GACTGTGATATGTCATCGCGNGGAGTACNACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACAAGCGTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTTTAAATTACAATCGTTATTAAATGATGGATGTAAATTCGCAAGTTCAACACACATAAACACACCCGTAAATTCACCCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGATAGCATATTGATCCGAATCTGACCGAGCCAATACTCCCCATCATTACCATCACCACCACCACCACCACCATCGTTCGCTGTCTGTGAATATACGTTTTAATGTTACAGTGGATTTAAACGACTAGCGTGGATGAACATTACTACAAGAGAGTTACAAAACTTCATGACAGTTGCGAAAAGTATTGCGATCGTGGCATACAAAAACACACACACATTCATTCAGGCTATTCGG AACACTTCACTACCAAGAGAGCGTAAGCATTTACGCTT AAANGGGTGC ]
[+] EMBL BX617400 [ GGTCATATTAGAGAGAAGGGGCTATCCGTGTTTAAATTACAATCGTTATTAAATGATGGATGTAAATTCGCAAGTTCAACACACATAAACACACCCGTAAATTCACCCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGATAGCATATTGATCCGAATCTGACCGAGCCAATACTCCCCATCATTACCATCACCACCACCACCACCACCATCGTTCGCTGTCTGTGAATATACGTTTTAATGTTACAGTGGATTTAAACGACTAGCGTGGATGAACATTACTACAAGAGAGTTACAAAACTTCATGACAGTTGCGAAAAGTATTGCGATCGTGGCATACAAAAACACACACACATTCATTCAGGCTATTCGGAAACACTTCACTACCAAGAGAGCGTAAGCATTTACGCTTAAAAGGGGTGCATCAGTTCTTATCCCAGCAAAAAAAAAATGGAAGAAAATTGAAAAAAAGTAACCATTCAGTGAAAGGAAGAAAATACAGA]
consensusID : consensus_5330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGACGAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGAT]
[+] EMBL BX608864 [CCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGACGAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGAT]
consensusID : consensus_5330#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[AATCGCCACGAGGCACACTAGTAGTTCGGGGGTGGTTTTGCGGAGACCCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGACGAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGCAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACAAGCGTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTNTAAACTTACAAATCGTATTAAAGTGATGGATGTAAACNTTCGCAAGTTCAACACACATAAAACACCACCCGTAAATTCACCCAACAAAGAACCAGACGCATAACAGAA]
[+] EMBL AL931141 [AATCGCCACGAGGCACACTAGTAGTTCGGGGGTGGTTTTGCGGAGACCCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGACGAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGCAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACAAGCGTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTNTAAACTTACAAATCGTATTAAAGTGATGGATGTAAACNTTCGCAAGTTCAACACACATAAAACACCACCCGTAAATTCACCCAACAAAGAACCAGACGCATAACAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5330#1 CCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCT 60
consensus_5330#2 --------------AATCGCCACGAGGCAC--ACTAGTAGTTCGGGGGTGGTTTTGCGG- 43
consensus_5330#0 ------------------------------------------------------------
consensus_5330#1 TCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTAT 120
consensus_5330#2 --AGACCCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACC----------ATCAT 91
consensus_5330#0 ------------------------------------------------------------
consensus_5330#1 TGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGAT 180
consensus_5330#2 TGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGAT 151
consensus_5330#0 ------------------------------------------------------------
consensus_5330#1 GGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGAC 240
consensus_5330#2 GGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGAC 211
consensus_5330#0 ------------------------------------------------------------
consensus_5330#1 GAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTT 300
consensus_5330#2 GAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTT 271
consensus_5330#0 ---------------------GACTGTGATATGTCATCGCGNGGAGTACNACCCGTTGTT 39
** * * * ** * ** **** **********
consensus_5330#1 GGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAAC 360
consensus_5330#2 GGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAAC 331
consensus_5330#0 GGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAAC 99
************************************************************
consensus_5330#1 CGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTA 420
consensus_5330#2 CGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTA 391
consensus_5330#0 CGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTA 159
************************************************************
consensus_5330#1 ACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGT 480
consensus_5330#2 ACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGT 451
consensus_5330#0 ACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGT 219
************************************************************
consensus_5330#1 AAATGG-AGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACCACCAAGACCCAGC 539
consensus_5330#2 AAATGGCAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACA-AGC 510
consensus_5330#0 AAATGG-AGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACA-AGC 277
****** *************************************** **** ** ***
consensus_5330#1 GCATA---ACAGAAATATGA----ACAGTCAAACAGTCAAATAGTCACAGACGTACCGAG 592
consensus_5330#2 GTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTNTAAACTTACAAAT 570
consensus_5330#0 GTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTTTAAAT-TAC-AAT 335
* * * * ** * * * ** ** * * * * *** *
consensus_5330#1 TGCAGGCAA--GAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAAT------TGTT 644
consensus_5330#2 CGTATTAAAGTGATGGATGTAAACNTTCGCAAGTTCAACACACATAAAACACCACCCGTA 630
consensus_5330#0 CGTTATTAAATGATGGATGTAAA--TTCGCAAGTTCAACACACATAAACA--CACCCGTA 391
* ** ** ** * *** * * * * * ** **
consensus_5330#1 TCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGAT------------------------- 679
consensus_5330#2 AATTCACCCAACAAAGAACCAGACGCATAACAGAA------------------------- 665
consensus_5330#0 AATTCACCCACC--AAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATA 449
** ** * *** ** **
consensus_5330#1 ------------------------------------------------------------
consensus_5330#2 ------------------------------------------------------------
consensus_5330#0 GTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTT 509
consensus_5330#1 ------------------------------------------------------------
consensus_5330#2 ------------------------------------------------------------
consensus_5330#0 CAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGATAGCATATTGATCCGAA 569
consensus_5330#1 ------------------------------------------------------------
consensus_5330#2 ------------------------------------------------------------
consensus_5330#0 TCTGACCGAGCCAATACTCCCCATCATTACCATCACCACCACCACCACCACCATCGTTCG 629
consensus_5330#1 ------------------------------------------------------------
consensus_5330#2 ------------------------------------------------------------
consensus_5330#0 CTGTCTGTGAATATACGTTTTAATGTTACAGTGGATTTAAACGACTAGCGTGGATGAACA 689
consensus_5330#1 ------------------------------------------------------------
consensus_5330#2 ------------------------------------------------------------
consensus_5330#0 TTACTACAAGAGAGTTACAAAACTTCATGACAGTTGCGAAAAGTATTGCGATCGTGGCAT 749
consensus_5330#1 ------------------------------------------------------------
consensus_5330#2 ------------------------------------------------------------
consensus_5330#0 ACAAAAACACACACACATTCATTCAGGCTATTCGGAACACTTCACTACCAAGAGAGCGTA 809
consensus_5330#1 ------------------------------------------------------------
consensus_5330#2 ------------------------------------------------------------
consensus_5330#0 AGCATTTACGCTTAAANGGGTGCATCAGTTCTTATCCCAGCAAAAAAAAAATGGAAGAAA 869
consensus_5330#1 -------------------------------------------
consensus_5330#2 -------------------------------------------
consensus_5330#0 ATTGAAAAAAAGTAACCATTCAGTGAAAGGAAGAAAATACAGA 912
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||