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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 926 fasta sequence
[CAGAATTCCCTGANGTTTCCAANGCCATCGTCACGGTGTGCAGCATANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAATACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTGGGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAGTACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTGAGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACTTGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGTTGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGCTTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAGGTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCCAATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTTGAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGCACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTACCTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAACAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCACTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG]
[+] EMBL AL931425 [CAGAATTCCCTGANGTTTCCAANGCCATCGTCACGGTGTGCAGCATANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAATACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTGGGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAGTACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTGAGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACTTGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGTTGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGCTTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAGGTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCCAATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTTGAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGCACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTACCTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAACAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCACTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG]
consensusID : consensus_5340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence
[CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTGAGGGTGCGTTCATAATGGGCGTCGGGTACTGGCTGACTGAAGCGTTGGTATACAATGCTGAAGACGGTGCTCTGCTAACGAACCGTACCTGGCACGTACAAGCCGCCAGGTGCGAAGG]
[+] EMBL BX611105 [CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCATGCCCTTGTAGCGATCCATGCCGGGGATGGATCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCCTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACGAGTTTGACTTCACCCAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAAATACTTCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAGGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAA ]
[+] EMBL BM634290 [ ccgCGGGTACTTCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTTTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTGAGGGTGCGTTCATAATGGGCGTCGGGTACTGGCTGACTGAAGCGTTGGTATACAATGCTGAAGACGGTGCTCTGCTAACGAACCGTACCTGGCACGTACAAGCCGCCAGGTGCGAAGG]
[+] EMBL BM611608 [ cCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5340#0 ------------------------------------------------------------
consensus_5340#1 CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCA 60
consensus_5340#0 ------------------------------------------------------------
consensus_5340#1 TGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGA 120
consensus_5340#0 ------------------------------------------------------------
consensus_5340#1 GATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCC 180
consensus_5340#0 -------------------------CAGAATTCCCTGANGTTTCC-AANGCCATCGTCAC 34
consensus_5340#1 GCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCAC 240
** * *** * ** ** ***********
consensus_5340#0 GGTGTGCAGCAT-ANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAA 93
consensus_5340#1 CGGTGGCAGCATGACCAGTGAGG--CCGTGTGCTATGCC-GTCAAGAAAGC-GTGTGAGA 296
* ******* * ******* * ************ *********** ****** *
consensus_5340#0 TACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTG 153
consensus_5340#1 TTCTGCTCGAAC-GCATCAAACC-GGTTCG--CGATGC-GCATAAG-GAC-GCACC-GTG 348
* ********** ********** ***** ***** ******* *** ***** ***
consensus_5340#0 GGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAG 213
consensus_5340#1 GGAAACC-GTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGC-GCTACCTATCAG 406
******* *************************************** ************
consensus_5340#0 TACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTG 273
consensus_5340#1 TACC-GTGC-GACCGA--GCTGAAGCCTTACATCATCTGGG--GCTTAAGCT-GTGCC-G 458
**** **** **** ********************** ********* ***** *
consensus_5340#0 AGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACT 333
consensus_5340#1 AG---GTGGAGGTG-GATGTGCTCACGGGCAATGTGCAGCT-GCGCCGTGTCGACATACT 513
** *** *** ************************** ******************
consensus_5340#0 TGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGT 393
consensus_5340#1 GGAA--GATACT-GGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATT---GAGGG 567
* * ****** *************************************** * **
consensus_5340#0 TGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGC 453
consensus_5340#1 TGCGTTCATAATGGG--CGTCGGGTACT-GGCTGACT--GAAGCGTTGGTATACAAT-GC 621
****** ** ** ** ********** ******** ***************** **
consensus_5340#0 TTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAG 513
consensus_5340#1 TGAA--GACG-GTGCTCT-GCTAAC-GAACC-GTACCTGGCAC-GTACAAG--CCGCCAG 672
* * **** ******* ****** ***** ****** * ** ****** * *****
consensus_5340#0 GTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCC 573
consensus_5340#1 GTGCGAAGG--------------------------------------------------- 681
********
consensus_5340#0 AATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTT 633
consensus_5340#1 ------------------------------------------------------------
consensus_5340#0 GAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGC 693
consensus_5340#1 ------------------------------------------------------------
consensus_5340#0 ACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTAC 753
consensus_5340#1 ------------------------------------------------------------
consensus_5340#0 CTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAA 813
consensus_5340#1 ------------------------------------------------------------
consensus_5340#0 CAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCA 873
consensus_5340#1 ------------------------------------------------------------
consensus_5340#0 CTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG 926
consensus_5340#1 -----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||