cluster # 5345

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Anopheles gambiae
cluster # 5345 cluster # 5345 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5345#0 length = 992 sequences # 3

consensus_5345#1 length = 484 sequences # 1

consensusID : consensus_5345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 992
fasta sequence

                              [CCGCACCGTTTCCCCGACTCAGATTGGCACACGAATTGCAGTGCTGCAGATTTAACAAACGCGAATAGAAGTATTTATTTAGGATCGCATGCACAAGTGTTCTAAACACATTTGCCCATAGCACAATGAGTTTAGTCAAAACAGTTGCTTTTCATAGTCTTTTGTACGGAGACCACTATTTCGGTTTATTTGTTATCCATATCTTAGAGACGGATTCTAAACATATCTATTTGCCATTGGAAGAATGTGGATGAAGGGTCTTGAAGTACACACCAGAGTCCGTTAGAGGTATAGAGGTGCAGCAAGCAAAGGGTAAAGCAAGATAAAGCTCCGTGTCATAATGCAAACCCCGGGTGCCATGCTCATTATGGTGGTATTTCAGGCAAGTTGCTAATTATTAAACAGCCGCTCTGTTTACGACACTGAAAGAAACGTGCACATTTAACTATTATTATCTTATTCGCGTATTGTGTTAACCAGCGGTACTAGTCCTTCAAGGGGATAGTCCACTTGAACAAAGGCGGAGGGGAAAATGCAAAAAATAATTCCTTGTTATTGAATTTTGTATTAACATTACTCTCTTGATATGTTATTAAATAGTG-AACCATAAGATCCCGCTGAGGCGAAATTATTGCCACGTAAATTCAAAATAACTCACTAACCATTGGCCATACAACGTAGAGCACTATTTAACGTATAACTACAAAGCCGCAACAAAATTAAACCGTCCGCTCGAGAGCGATCGTATTACTACAATACCCATACAGGTTGGCTGGCAAGTGGGGTACGTAAATGCGCGTGTACATAAAATGTCCTCCAGTCACCACACTTCGCTTAACAGTGCGTAAAGTGCGCAAAAAGAAAGGAAGATAAATTTTAACTGGTACTAAATACAATGTAAACAGATGTATGCAATGAACTGTAATTTAAAACAGACGTCGTTCGTTCACTCTGAGCCGTATTCATAAAAAATAAAAAGATGGTTAAAAGGT]

[+] EMBL BM639095             [CCGCACCGTTTCCCCGACTCAGATTGGCACACGAATTGCAGTGCTGCAGATTTAACAAACGCGAATAGAAGTATTTATTTAGGATCGCATGCACAAGTGTTCTAAACACATTTGCCCATAGCACAATGAGTTTAGTCAAAACAGTTGCTTTTCATAGTCTTTTGTACGGAGACCACTATTTCGGTTTATTTGTTATCCATATCTTAGAGACGGATTCTAAACATATCTATTTGCCATTGGAAGAATGTGGATGAAGGGTCTTGAAGTACACACCAGAGTCCGTTAGAGGTATAGAGGTGCAGCAAGCAAAGGGTAAAGCAAGATAAAGCTCCGTGTCATAATGCAAACCCCGGGTGCCATGCTCATTATGGTGGTATTTCAGGCAAGTTGCTAATTATTAAACAGCCGCTCTGTTTACGACACTGAAAGAAACGTGCACATTTAACTATTATTATCTTATTCGCGTATTGTGTTAACCAGCGGTACTAGTCCTTCAAGGGGATAGTCCACTTGAACAAAGGCGGAGGGGAAAATGCAAAAAATAATTCCTTGTTATTGAATTTTGTATTAACATTACTCTCTTGATATGTTATTAAATAGTGCAACCATAAGATCCCGCTGAGGCGAAATTATTGCTACGTAAATTCGAAATAACTCACTAACCATTGGCCATACA                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX623664             [                                                                                                                                                                                                                                                                                                                                                                              TATGGTGGTATTTCAGGCAAGTTGCTAATTATTAAACAGCCGCTCTGTTTACGACACTGAAAGAAACGTGCACATTTAACTATTATTATCTTATTCGCGTATTGTGTTAACCAGCGGTGCTAGTCTCTCAAGCAGATAGTCCACTTGAACAAAGGCGGAGGGGAAAATGCAAAAAATAATTCCTTGTTATTGAATTTTGTATT        TCTCTCGATATGTTATTAAATAGTG AACCATAAGATCCCGCTGAGGCGAAATTATTGCCACGTAAATTCAAAATAACTCACTAACCATTGGACATACAACGTAGAGCACTATTTAACGTATAACTACAAAGCCGCAACAAAATTAAACCGTCCGCTCGAGAGCGATCGTATTACTACAATACCCATACAGGTTGGCTGGCAAGTGGGGTACGTAAATGCGCGTGTACATAAAATGTCCTCCAGTCACCACACTTCGCTTAACAGTGCGTAAAGTGCGCAAAAAGAAAGGAAGATAAATTTTAACTGGTACTAAATACAATGTAAACAGATGTATGCAATGAACTGTAATTTAAAACAGACGTCGTTCGTTCACTCTGA                                     ]
[+] EMBL BM604172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccgAAATAGTG AACCATAAGATCCCGCTGAGGCGAAATTATTGCCACGTAAATTCAAAATAACTCACTAACCATTGGCCATACAACGTAGAGCACTATTTAACGTATAACTACAACGCCGCAACAAAATTAAACCGTCCGCTCGAGAGCGATCGTATTACTACAATACCCATACAGGTTGGCTGGCAAGTGGGGTACGTAAATGCGCGTGTACATAAAATGTCCTCCAGTCACCACACTTCGCTTAACAGTGCGTAAAGTGCGCAAAAAGAAAGGAAGATAAATTTTAACTGGTACTAAATACAATGTAAACAGATGTATGCAATGAACTGTAATTTAAAACAGACGTCGTTCGTTCACTCTGAGCCGTATTCATAAAAAATAAAAAGATGGTTAAAAGGT]




>consensus_5345#0
CCGCACCGTTTCCCCGACTCAGATTGGCACACGAATTGCAGTGCTGCAGATTTAACAAAC
GCGAATAGAAGTATTTATTTAGGATCGCATGCACAAGTGTTCTAAACACATTTGCCCATA
GCACAATGAGTTTAGTCAAAACAGTTGCTTTTCATAGTCTTTTGTACGGAGACCACTATT
TCGGTTTATTTGTTATCCATATCTTAGAGACGGATTCTAAACATATCTATTTGCCATTGG
AAGAATGTGGATGAAGGGTCTTGAAGTACACACCAGAGTCCGTTAGAGGTATAGAGGTGC
AGCAAGCAAAGGGTAAAGCAAGATAAAGCTCCGTGTCATAATGCAAACCCCGGGTGCCAT
GCTCATTATGGTGGTATTTCAGGCAAGTTGCTAATTATTAAACAGCCGCTCTGTTTACGA
CACTGAAAGAAACGTGCACATTTAACTATTATTATCTTATTCGCGTATTGTGTTAACCAG
CGGTACTAGTCCTTCAAGGGGATAGTCCACTTGAACAAAGGCGGAGGGGAAAATGCAAAA
AATAATTCCTTGTTATTGAATTTTGTATTAACATTACTCTCTTGATATGTTATTAAATAG
TGAACCATAAGATCCCGCTGAGGCGAAATTATTGCCACGTAAATTCAAAATAACTCACTA
ACCATTGGCCATACAACGTAGAGCACTATTTAACGTATAACTACAAAGCCGCAACAAAAT
TAAACCGTCCGCTCGAGAGCGATCGTATTACTACAATACCCATACAGGTTGGCTGGCAAG
TGGGGTACGTAAATGCGCGTGTACATAAAATGTCCTCCAGTCACCACACTTCGCTTAACA
GTGCGTAAAGTGCGCAAAAAGAAAGGAAGATAAATTTTAACTGGTACTAAATACAATGTA
AACAGATGTATGCAATGAACTGTAATTTAAAACAGACGTCGTTCGTTCACTCTGAGCCGT
ATTCATAAAAAATAAAAAGATGGTTAAAAGGT

consensusID : consensus_5345#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [AGAATCGCCCGAGGTNATTCTGATGTTGGAGCGGCGCAAAATGCCTGTTTTTATTTTTGGCACCGCTCCTTTAATAATCGATTACGCTCGCGCCTTTTATTTGGCTCCCCATTTCTCCTATAATTTATACAACAGCTATTTATTCTCTTGCGATCATTCCTCTTTCTATACCTGTTTTTTTTTTAAACATATTTTACTTATTATGATGCACCGTTTCCCCGACTCAGATTGGCACACGAATTGCAGTGCTGCAGATTTAACAAACGCGAAACAGAAGTATTCTACTTCTAGGATCGCATGCACAAGTGTNCTAAACACATTTGCCCATAGCACAATGAGTTCAGTCAAAACAGTTATGCTTTTCATAGTCTTTTGTACGGAGACCACCATTTCGCGCCTTATTCNCGNNCATCCATATCTTAGAGACGGATTCAAAACATATCTATTTGCCATTGGAAGAATGTGGCATGAACGGGTCGTGCAN]

[+] EMBL AL931613             [AGAATCGCCCGAGGTNATTCTGATGTTGGAGCGGCGCAAAATGCCTGTTTTTATTTTTGGCACCGCTCCTTTAATAATCGATTACGCTCGCGCCTTTTATTTGGCTCCCCATTTCTCCTATAATTTATACAACAGCTATTTATTCTCTTGCGATCATTCCTCTTTCTATACCTGTTTTTTTTTTAAACATATTTTACTTATTATGATGCACCGTTTCCCCGACTCAGATTGGCACACGAATTGCAGTGCTGCAGATTTAACAAACGCGAAACAGAAGTATTCTACTTCTAGGATCGCATGCACAAGTGTNCTAAACACATTTGCCCATAGCACAATGAGTTCAGTCAAAACAGTTATGCTTTTCATAGTCTTTTGTACGGAGACCACCATTTCGCGCCTTATTCNCGNNCATCCATATCTTAGAGACGGATTCAAAACATATCTATTTGCCATTGGAAGAATGTGGCATGAACGGGTCGTGCAN]




>consensus_5345#1
AGAATCGCCCGAGGTNATTCTGATGTTGGAGCGGCGCAAAATGCCTGTTTTTATTTTTGG
CACCGCTCCTTTAATAATCGATTACGCTCGCGCCTTTTATTTGGCTCCCCATTTCTCCTA
TAATTTATACAACAGCTATTTATTCTCTTGCGATCATTCCTCTTTCTATACCTGTTTTTT
TTTTAAACATATTTTACTTATTATGATGCACCGTTTCCCCGACTCAGATTGGCACACGAA
TTGCAGTGCTGCAGATTTAACAAACGCGAAACAGAAGTATTCTACTTCTAGGATCGCATG
CACAAGTGTNCTAAACACATTTGCCCATAGCACAATGAGTTCAGTCAAAACAGTTATGCT
TTTCATAGTCTTTTGTACGGAGACCACCATTTCGCGCCTTATTCNCGNNCATCCATATCT
TAGAGACGGATTCAAAACATATCTATTTGCCATTGGAAGAATGTGGCATGAACGGGTCGT
GCAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5345#0      CCGCACCGTTTCCCCGACTCAGATTGGCACACGAATTGCAGTGCTGCAGATTTAACAAAC 60
consensus_5345#1      ------------------------------------------------------------
                                                                                  

consensus_5345#0      GCGAATAGAAGTATTTATTTAGGATCGCATGCACAAGTGTTCTAAACACATTTGCCCATA 120
consensus_5345#1      ------------------------------------------------------------
                                                                                  

consensus_5345#0      GCACAATGAGTTTAGTCAAAACAGTTGCTTTTCATAGTCTTTTGTACGGAGACCACTATT 180
consensus_5345#1      ------------------------------------------------------------
                                                                                  

consensus_5345#0      TCGGTTTATTTGTTATCCATATCTTAGAGACGGATTCTAAACATATCTATTTGCCATTGG 240
consensus_5345#1      ------------------------------------------------------------
                                                                                  

consensus_5345#0      AAGAATGTGGATGAAGGGTCTTGAAGTACACACCAGAGTCCGTTAGAGGTATAGAGGTGC 300
consensus_5345#1      -----------------------AGAATCGCCCGAGGTNATTCTGATGTTGGAGCGGCGC 37
                                             *    * * * **       *   * *  ** ** **

consensus_5345#0      AGCAAGCAAAGGGTAAAGCAAGATAAAGCTCCGTGTCATAATGCAAACCCCGGGTGCCAT 360
consensus_5345#1      AAAATGCCTGTTTTTATTTTTGGCACCGCTCC-TTTAATAATCGATTACGCTCGCGCCTT 96
                      *  * **      * *     *  *  ***** * * *****  *   * *  * *** *

consensus_5345#0      GCTCATTATGGTGGTATTTCAGGCAAGTTGCTAATTATTAAACAGCCGCTCTGTTTACGA 420
consensus_5345#1      --TTATT----TGGCTCCCCATTTCTCCTATAATTTATACAACAGCTATTTATTCTCTTG 150
                        * ***    ***     **       *   * ****  ******   *   * *    

consensus_5345#0      CACTGAAAGAAACGTGCACATTTAACTATTATTATCTTATTCGCGTATTGTGTTAACCAG 480
consensus_5345#1      CGATCA----TTCCTCTTTCTATACCTGTTTTTTTTTTAAACATATTTTAC-TTATTATG 205
                      *  * *      * *     * ** ** ** ** * ***  *   * **   ***    *

consensus_5345#0      CGGTACTAGTCCTTCAAGGGGATAGTCCACTTGAACAAAGGCGGAGGGGAAAATGCAAAA 540
consensus_5345#1      ATGCACCGTTTCCCCGACTCAGATTGGCACACGAAT---TGCAGTGCTGCAGATTTAACA 262
                        * **   * *  * *          ***  ***     ** * *  * * **  ** *

consensus_5345#0      AATAATTCCTTGTTATTGAATTTTGTATTAACATTACTCTCTTGATATGTTATTAAATAG 600
consensus_5345#1      AACG------------CGAA----ACAGAAGTATTCTACTTCTAGGATCGCATGCACAAG 306
                      **               ***      *  *  ***   **  *   **   **  *  **

consensus_5345#0      TGAACCATA-AGATCCCGCTGAGGCGAAATTATTGCCACGTAAATTCAAAATAACT-CAC 658
consensus_5345#1      TGTNCTAAACACATTTGCCCATAGCACAATGAGTTC-------AGTCAAAACAGTTATGC 359
                      **  * * * * **    *    **  *** * * *       * ****** *  *   *

consensus_5345#0      TAACCATTGGCCATACAACGTAGAGCACTATTTAACGTATAACTACAAAGCCGCAACAAA 718
consensus_5345#1      TTTTCATAGTCTTTTGTACGGAGACCACCATTTCGCGCCTTATTCNCGNNCATCCATATC 419
                      *   *** * *  *   *** *** *** ****  **  * * *      *  * * *  

consensus_5345#0      ATTAAACCGTCCGCTCGAGAGCGATCGTATTACTACAATACCCATACAGGTTGGCTGGCA 778
consensus_5345#1      TTAGAGACGG--ATTCAAAACATATCTATTTGCCATTGGAAGAATGTGGCATGAACGGGT 477
                       *  *  **     ** * *   ***   ** * *    *   **   *  **   **  

consensus_5345#0      AGTGGGGTACGTAAATGCGCGTGTACATAAAATGTCCTCCAGTCACCACACTTCGCTTAA 838
consensus_5345#1      CGTGCAN----------------------------------------------------- 484
                       ***                                                        

consensus_5345#0      CAGTGCGTAAAGTGCGCAAAAAGAAAGGAAGATAAATTTTAACTGGTACTAAATACAATG 898
consensus_5345#1      ------------------------------------------------------------
                                                                                  

consensus_5345#0      TAAACAGATGTATGCAATGAACTGTAATTTAAAACAGACGTCGTTCGTTCACTCTGAGCC 958
consensus_5345#1      ------------------------------------------------------------
                                                                                  

consensus_5345#0      GTATTCATAAAAAATAAAAAGATGGTTAAAAGGT 992
consensus_5345#1      ----------------------------------