cluster # 5349

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Anopheles gambiae
cluster # 5349 cluster # 5349 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5349#0 length = 622 sequences # 3

consensus_5349#1 length = 583 sequences # 1

consensusID : consensus_5349#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 622
fasta sequence

                              [CCG-GCGAGTGGTTCGTTGGCGACGATCAAGTTTCCTGCAACCGTACACAGTACAAGCCTTGCGTGGATTGTGTTTTATTGCGCGATTTTATACCGGAAGAGCACTCATTCGAGCTCTTTCCTTCAAGTGATCGTTAACCGTTGCCAGAAATGGCAGCAGAAGAAAATGGTACCAATGCCATCAACACCGTCGTAGGGCCGGACGATGATCCGATGCGTGATCCAACACGCTGGGAGAAGTTCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTATGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCTTGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTCCACCGATCACCGGATTCCTGGTGGACAAGTTCGGACGGTACAAACCAGTTGTCATCATGAGTTTGCTTTTAAATGCATTATTTCACCATTCGCTGCTGCTGATCCCGCAGCAGGAAATACCTGGCAAGCTACCGGAAGCGTACGTAATGAGACATCCCGGCACGGGAAATGTAGAAGGTTTGGTGGTCACCCTGCCCCAGCC]

[+] EMBL BM656919             [CCG GCGAGTGGTTCGTTGGCGACGATCAAGTTTCCTGCAACCGTACACAGTACAAGCCTTGCGTGGATTGTGTTTTATTGCGCGATTGGATACCGGAAGAGCACTCATTCGAGCTCTTTCCTTCAAGTGATCGTTAACCGTTGCCAGAAATGGCAGCAGAAGAAAATGGTACCAATGCCATCAACACCGTCGTAGGGCCGGACGATGATCCGATGCGTGATCCAACACGCTGGGAGAAGTTCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTATGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCTTGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTCCACCGATCACCGGATTCTTGGTGGACAAGTTCGGACGGTACAAACCAGTTGTCATCATGAGTTTGCTTTTAAATGCATTATTTCACCATTCGCTGCTGCTGATCCCGCAGCAGGAAATACCTGGCAAGCTACCGGAAGCGTACGTAATGAGACATCCCGGCACGGGAAATGTAGAAGGTTTGGTGGTCACCCTGCCCCAGCC]
[+] EMBL BM646360             [CCGCGCGAGTGGTTCGTTGGCGACGATCAAGTTTCCTGCAACCGTACACAGTACAAGCCTTGCGTGGATTGTGTTTTATTGCGCGATTTTATACCGGAAGAGCACTCATTCGAGCTCTTTCCTTCAAGTGATCGTTAACCGTTGCCAGAAATGGCAGCAGAAGAAAATGGTACCAATGCCATCAACACCGTCGTAGGGCCGGACGATGATCCGATGCGTGATCCAACACGCTGGGAGAAGTTCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTATGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCTTGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTCCACCGATCACCGGATTCCTGGTGGACAAGTTCGGACGGTACAAACCAGTTGTCATCATGAGTTTGCTTTTAAATGCATTATTTCACCATTCGCTGCTGCTGATCCCGCAGCAGGAAATACCTGGCAAGCTACCGGAAGCGTACGTAATGAGACATCCCGGCACGGGAAATGTAG AGGTTTGGTGGTCACCCTGCCCCA   ]
[+] EMBL BM638421             [        ccGGTTCGTTGGCGACGATCAAGTTTCCTGCAACCGTACACAGTACAAGCCTTGCGTGGATTGTGTTTTATTGCGCGATTTTATACCGGAAGAGCACTCATTCGAGCTCTTTCCTTCAAGTGATCGTTAACCGTTGCCAGAAATGGCAGCAGAAGAAAATGGTACCAATGCCATCAACACCGTCGTAGGGCCGGACGATGATCCGATGCGTGATCCAACACGCTGGGAGAAGTTCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTATGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCTTGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTCCACCGATCACCGGATTCCTGGTGGACAAGTTCGGACGGTACAAACCAGTTGT                                                                                                                                                      ]




>consensus_5349#0
CCGGCGAGTGGTTCGTTGGCGACGATCAAGTTTCCTGCAACCGTACACAGTACAAGCCTT
GCGTGGATTGTGTTTTATTGCGCGATTTTATACCGGAAGAGCACTCATTCGAGCTCTTTC
CTTCAAGTGATCGTTAACCGTTGCCAGAAATGGCAGCAGAAGAAAATGGTACCAATGCCA
TCAACACCGTCGTAGGGCCGGACGATGATCCGATGCGTGATCCAACACGCTGGGAGAAGT
TCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTA
TGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCT
TGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTC
CACCGATCACCGGATTCCTGGTGGACAAGTTCGGACGGTACAAACCAGTTGTCATCATGA
GTTTGCTTTTAAATGCATTATTTCACCATTCGCTGCTGCTGATCCCGCAGCAGGAAATAC
CTGGCAAGCTACCGGAAGCGTACGTAATGAGACATCCCGGCACGGGAAATGTAGAAGGTT
TGGTGGTCACCCTGCCCCAGCC

consensusID : consensus_5349#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [AACACGCTGGGAGAAGTTCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTATGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCTTGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTCCACCGATCACCGGTAAGCATTTCGGGAAAAGTTCCTCTTCCAAAGCGCTCTCGTTCGAGCGTTCAGTGGTGTTGCTTTCTTTTCGTGCTTCTTGAAGTTTCCGCCGCCGGTCAGCATCTTATCAAACGGTTCAACTGATAACGAACAGTTGTGCATCCATCCTCAGCCGTCTCAGTGGTTCACGTTGTGTTTAAGAGACAGCCGGAAAGTAGCGGGTGGCTGTGGAAAACCACCGCAAACCGCGCTAGAATAAATTTATATATAACCGATACCAAAAATGTGTGCAACGAAGAAAGGCACCGACCGCGCAACAAGCAAAATAAGTACGGTGGTGTGGAGTTGTAGCGGAAAGGTTCCACCTCCAAAGGTTTCATTTCGTCGCTGGA]

[+] EMBL BX615143             [AACACGCTGGGAGAAGTTCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTATGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCTTGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTCCACCGATCACCGGTAAGCATTTCGGGAAAAGTTCCTCTTCCAAAGCGCTCTCGTTCGAGCGTTCAGTGGTGTTGCTTTCTTTTCGTGCTTCTTGAAGTTTCCGCCGCCGGTCAGCATCTTATCAAACGGTTCAACTGATAACGAACAGTTGTGCATCCATCCTCAGCCGTCTCAGTGGTTCACGTTGTGTTTAAGAGACAGCCGGAAAGTAGCGGGTGGCTGTGGAAAACCACCGCAAACCGCGCTAGAATAAATTTATATATAACCGATACCAAAAATGTGTGCAACGAAGAAAGGCACCGACCGCGCAACAAGCAAAATAAGTACGGTGGTGTGGAGTTGTAGCGGAAAGGTTCCACCTCCAAAGGTTTCATTTCGTCGCTGGA]




>consensus_5349#1
AACACGCTGGGAGAAGTTCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAA
GATTACATTGTTCGTTATGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCA
CATGCAAAGTACCGGCTTGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTT
CACCACGTTCCTAAGTCCACCGATCACCGGTAAGCATTTCGGGAAAAGTTCCTCTTCCAA
AGCGCTCTCGTTCGAGCGTTCAGTGGTGTTGCTTTCTTTTCGTGCTTCTTGAAGTTTCCG
CCGCCGGTCAGCATCTTATCAAACGGTTCAACTGATAACGAACAGTTGTGCATCCATCCT
CAGCCGTCTCAGTGGTTCACGTTGTGTTTAAGAGACAGCCGGAAAGTAGCGGGTGGCTGT
GGAAAACCACCGCAAACCGCGCTAGAATAAATTTATATATAACCGATACCAAAAATGTGT
GCAACGAAGAAAGGCACCGACCGCGCAACAAGCAAAATAAGTACGGTGGTGTGGAGTTGT
AGCGGAAAGGTTCCACCTCCAAAGGTTTCATTTCGTCGCTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5349#0      CCGGCGAGTGGTTCGTTGGCGACGATCAAGTTTCCTGCAACCGTACACAGTACAAGCCTT 60
consensus_5349#1      ------------------------------------------------------------
                                                                                  

consensus_5349#0      GCGTGGATTGTGTTTTATTGCGCGATTTTATACCGGAAGAGCACTCATTCGAGCTCTTTC 120
consensus_5349#1      ------------------------------------------------------------
                                                                                  

consensus_5349#0      CTTCAAGTGATCGTTAACCGTTGCCAGAAATGGCAGCAGAAGAAAATGGTACCAATGCCA 180
consensus_5349#1      ------------------------------------------------------------
                                                                                  

consensus_5349#0      TCAACACCGTCGTAGGGCCGGACGATGATCCGATGCGTGATCCAACACGCTGGGAGAAGT 240
consensus_5349#1      -------------------------------------------AACACGCTGGGAGAAGT 17
                                                                 *****************

consensus_5349#0      TCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTA 300
consensus_5349#1      TCTGCCAGCGTCATGGAATCAATCCGAATCTGATTATGCTGAAGATTACATTGTTCGTTA 77
                      ************************************************************

consensus_5349#0      TGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCT 360
consensus_5349#1      TGTACGGCGCCACCTCCTCGCTGCTACCGTACCTGACCATCCACATGCAAAGTACCGGCT 137
                      ************************************************************

consensus_5349#0      TGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTC 420
consensus_5349#1      TGACGGTAGAGGAAATCGCAATCATCTACTTGGCGCTACCGTTCACCACGTTCCTAAGTC 197
                      ************************************************************

consensus_5349#0      CACCGATCACCGG--ATTCCTGGTGGACAAGTTCGGACGGTACAAACCAGTTGTCATCAT 478
consensus_5349#1      CACCGATCACCGGTAAGCATTTCGGGAAAAGTTCCTCT--TCCAAAGCGCTCTCGTTCGA 255
                      *************  *    *   *** ******      * **** *  *     **  

consensus_5349#0      GAGTTTGCTTTTAAATGCATTATTTCACCATTCGCTGCTGCTGATCCCGCAG--CAGGAA 536
consensus_5349#1      GCGTTCAGTGGTGT-TGCTTTCTTTTCGTGCTTCTTGAAGTTTCCGCCGCCGGTCAGCAT 314
                      * ***   *  *   *** ** ***      *   **  * *    **** *  *** * 

consensus_5349#0      ATACCTGGCAAGCT--ACCGGAAGCGTACGTAATGAGACATCCCGGCACGGGAAATGTAG 594
consensus_5349#1      CTTATCAAACGGTTCAACTGATAACGAAC--AGTTGTGCATCCATCCTCAGCCGTCTCAG 372
                       *         * *  ** *  * ** **  * *    *****   * * *       **

consensus_5349#0      AAGGTTTGGTGGTCACCCTGCCCCAGCC-------------------------------- 622
consensus_5349#1      TGGTTCACGTTGTGTTTAAGAGACAGCCGGAAAGTAGCGGGTGGCTGTGGAAAACCACCG 432
                        * *   ** **      *   *****                                

consensus_5349#0      ------------------------------------------------------------
consensus_5349#1      CAAACCGCGCTAGAATAAATTTATATATAACCGATACCAAAAATGTGTGCAACGAAGAAA 492
                                                                                  

consensus_5349#0      ------------------------------------------------------------
consensus_5349#1      GGCACCGACCGCGCAACAAGCAAAATAAGTACGGTGGTGTGGAGTTGTAGCGGAAAGGTT 552
                                                                                  

consensus_5349#0      -------------------------------
consensus_5349#1      CCACCTCCAAAGGTTTCATTTCGTCGCTGGA 583