cluster # 5356

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Anopheles gambiae
cluster # 5356 cluster # 5356 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5356#0 length = 851 sequences # 3

consensus_5356#1 length = 704 sequences # 1

consensusID : consensus_5356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 851
fasta sequence

                              [CGAACCAGTTCGCCAATCAGGTCCAATACGACTATAACAATCACCGTGCAGGCGGCAACAACT-GACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGGTGGTGGTGGCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGGAAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGACGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTTTTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGT---AGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTTATAATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTTTGTACTGTAAAACGAGAAAAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCATAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTATTTGTATGGATCGAAAAGCTCTTTTTCTGTACGTTAAGATATGCGTTAGTTGCAATTTTTACAGGACCTATCCTGTGCTGGTAAGTGG]

[+] EMBL BX602438             [CGAACCAGTTCGCCAATCAGGTCCAATACGACTATAACAATCACCGTGCAGGCGGCAACAACT GACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGGTGGTGGTGGCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGGAAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGACGGGAGGCGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX612498             [                                                            ACTGGACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGGTGGTGGTGTCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGGAAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTTTTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGT   AGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTTATAATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTTTGTACTGTAAAACGAGAAAAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCATAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTATTTGTATGGATCGAAAAGCTCTTTTTCTGTACGTTAAGATATGCGTTAG                                       ]
[+] EMBL BX611293             [                                                                                                                                                                                                                                                                AGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTTTTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTTATAATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTTTGTACTGTAAAACGAGAAAAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCATAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTATTTGTATGGATCGAAAAGCTCTTTTTCTGTACGTTAAGATATGCGTTAGTTGCAATTTTTACAGGACCTATCCTGTGCTGGTAAGTGG]




>consensus_5356#0
CGAACCAGTTCGCCAATCAGGTCCAATACGACTATAACAATCACCGTGCAGGCGGCAACA
ACTGACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGG
TGGTGGTGGCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGG
AAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAA
TTATGGATCGACGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAG
ACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTT
TTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGA
GTAGTAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTTATA
ATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCGAAC
GTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTTTGTACTGTAAAACGAGAA
AAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTT
AGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCATAGGAACTTAGG
AATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTATTTGTATGGATCGAAAA
GCTCTTTTTCTGTACGTTAAGATATGCGTTAGTTGCAATTTTTACAGGACCTATCCTGTG
CTGGTAAGTGG

consensusID : consensus_5356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [GCAAGAATCGGCACGATGGACGAAATAGCAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTCTTTTAAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCATATAATGCCGCCAAGACAAGGAAACATCAATCACGATCATTTACTATTGAGACTCACCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGTGGTTCACCAGAAAGGGTTTGTAGTGTAAAACGGGAAAAACAACCAAATCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCGTAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGCATTTGTATGGATCGAAAAAGCTCTTTANTCCGTAGGTTAACGATATGCGGTTAGTTGCAAATTTTTACACGGTATCTATCCTTGTGCTGGGTAAGTGGTACCCGG]

[+] EMBL BX467983             [GCAAGAATCGGCACGATGGACGAAATAGCAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTCTTTTAAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCATATAATGCCGCCAAGACAAGGAAACATCAATCACGATCATTTACTATTGAGACTCACCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGTGGTTCACCAGAAAGGGTTTGTAGTGTAAAACGGGAAAAACAACCAAATCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCGTAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGCATTTGTATGGATCGAAAAAGCTCTTTANTCCGTAGGTTAACGATATGCGGTTAGTTGCAAATTTTTACACGGTATCTATCCTTGTGCTGGGTAAGTGGTACCCGG]




>consensus_5356#1
GCAAGAATCGGCACGATGGACGAAATAGCAATAACAACAACAACCGCTACGGGCAGAACA
ATTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAA
GACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTCT
TTTAAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGA
GTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCAT
ATAATGCCGCCAAGACAAGGAAACATCAATCACGATCATTTACTATTGAGACTCACCCCG
AACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGTGGTTCACCAGAAAGGGTTT
GTAGTGTAAAACGGGAAAAACAACCAAATCTCGATTTTCTTTACAAACATGTGTAGGGAA
TACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAG
CAGCGTAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGCA
TTTGTATGGATCGAAAAAGCTCTTTANTCCGTAGGTTAACGATATGCGGTTAGTTGCAAA
TTTTTACACGGTATCTATCCTTGTGCTGGGTAAGTGGTACCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5356#0      CGAACCAGTTCGCCAATCAGGTCCAATACGACTATAACAATCACCGTGCAGGCGGCAACA 60
consensus_5356#1      ------------------------------------------------------------
                                                                                  

consensus_5356#0      ACTGACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGG 120
consensus_5356#1      ------------------------------------------------------------
                                                                                  

consensus_5356#0      TGGTGGTGGCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGG 180
consensus_5356#1      ------------------------------------------------------GCAAG- 5
                                                                            *** * 

consensus_5356#0      AAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAA 240
consensus_5356#1      -AATCGGCACGATGG---ACGAAATAGCAATAACAACAACAACCGCTACGGGCAGAACAA 61
                       *** **   * ***   ******** *********************************

consensus_5356#0      TTATGGATCGACGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAG 300
consensus_5356#1      TTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAG 121
                      ********** *************************************************

consensus_5356#0      ACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTT 360
consensus_5356#1      ACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTCTT 181
                      ********************************************************* **

consensus_5356#0      TTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGA 420
consensus_5356#1      TTA-AATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGA 240
                      **  ********************************************************

consensus_5356#0      GTAGTA---GAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTT 477
consensus_5356#1      GTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCAT 300
                      ******   ************************************************* *

consensus_5356#0      ATAATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCG 537
consensus_5356#1      ATAATGCCGCCAAGACAAGGAAACATCAATCACGATCATTTACTATTGAGACTCACCCCG 360
                      ********************** ******************************* *****

consensus_5356#0      AACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTT--------------T 583
consensus_5356#1      AACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGTGGTTCACCAGAAAGGGTTT 420
                      **************************************** ****              *

consensus_5356#0      GTACTGTAAAACGAGAAAAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAA 643
consensus_5356#1      GTAGTGTAAAACGGGAAAAACAACCAAATCTCGATTTTCTTTACAAACATGTGTAGGGAA 480
                      *** ********* ************* ********************************

consensus_5356#0      TACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAG 703
consensus_5356#1      TACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAG 540
                      ************************************************************

consensus_5356#0      CAGCATAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTA 763
consensus_5356#1      CAGCGTAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGCA 600
                      **** ***************************************************** *

consensus_5356#0      TTTGTATGGATCGAAAA-GCTCTTT-TTCTGTACGTTAA-GATATGCG-TTAGTTGCAAT 819
consensus_5356#1      TTTGTATGGATCGAAAAAGCTCTTTANTCCGTAGGTTAACGATATGCGGTTAGTTGCAAA 660
                      ***************** *******  ** *** ***** ******** ********** 

consensus_5356#0      TTTT---ACAGGACCTATCCT-GTGCTGG-TAAGTGG------- 851
consensus_5356#1      TTTTTACACGGTATCTATCCTTGTGCTGGGTAAGTGGTACCCGG 704
                      ****   ** * * ******* ******* *******