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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1078 fasta sequence
[CCGGATCATCAGCTTCGCCGGAACGGACGGGAGCGTGTTGCGTGTGTAAACAAGGGTTGCGATCGTAAAAAGGAAAAAGAGCGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGGCCTCGCCCACTATGAGTCCCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCAGTCTGGGCGACTACGCCAAGGCAACGATCTGTATCGACCTTGCCTCCAGCCTGCTCGGACTGCCGTTCGACACCGACACGGCGATGAAGCTGTCCGGCCTGAGGAAAACGGCGTACGCGAACGGGCGCCGCACGCTGGAAAAGGTGCTGGACATTAACAAAACGCTCGGCATCGGGGAGATTTGTGTGCAGGTGGGCGTTACCCAGGTGCAGCAGGAAGCGGCCACACTGCTCGAAGCGTACAAGCAGTACGCCGGACAGGGCGGCGGCGGCGGCGGGATCGATTTTAGCCACCCGCAGTACGCGACGATGGCCGTGTTTCAGGCGTGCAAGCGGCAGAAGGTGAAACCGCCCAAAACGAAGCTGCTACCGTTCAGCCATCTCAAGCCGGCCCAGTGGAGCATGCTGGAGAAGAACTGGGAGAAGTTTCTCGCCACCGGTGCGGCCGATATGGGACCGAAGGTTGCGAATACCAGGGGCGTTGTGGTGCAGGAGCTGGCAGCAAGGGGCGAAGAGGAGCAGGCCAATGGTGGTGGGAGCAGTGCGGCACGGAAGCACGCGAGTTCGGAAAAGATCGAACCGTACCAGAGCTGGAAGAAACGGATGCTCGAGAAGGCGTACCGGGAGCTGGAGCTGCAACGGGACAGTGGGTAAATGTCCCTTTTCTCAACCCCCCCACGAACCATCATTTCACGATCCCACATCTTTTTTTACGCTTAGAGGTGTGTTGTTTCGAGGACGCAATGTTAGTGTTTGCACTGTGCCAATACATATCCAGATATTATTTACCGTGAATTGTTAAGACCCTAGCTTTACGTAAGGTGCATATTTGTATACATAATTAGTAATAAAAAA]
[+] EMBL BM581350 [CCGGATCATCAGCTTCGCCGGAACGGACGGGAGCGTGTTGCGTGTGTAAACAAGGGTTGCGATCGTAAAAAGGAAAAAGAGCGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGGCCTCGCCCACTATGAGTCCCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCAGTCTGGGCGACTACGCCAAGGCAACGATCTGTATCGACCTTGCCTCCAGCCTGCTCGGACTGCCGTTCGACACCGACACGGCGATGAAGCTGTCCGGCCTGAGGAAAACGGCGTACGCGAACGGGCGCCGCACGCTGGAAAAGGTGCTGGACATTAACAAAACGCTCGGCATCGGGGAGATTTGTGTGCAGGTGGGCGTTACCCAGGTGCAGCAGGAAGCGGCCACACTGCTCGAAGCGTACAAGCAGTACGCCGGACAGGGCGGCGGCGGCGGCGGGATCGATTTTAGCCACCCGCAGTACGCGACGATGGCCGTGTTTCAGGCGTGCAAGCGGCAGAAGGTGAAACCGCCCAAAACGAAGCTGCTACCGTTCAGCCATCTCAAGCCGGCCCAGTGGAGCATGCTGGAGAAGAACTGGGAGAAGTTTCTCGCCACCGGTGCGGCCGA ]
[+] EMBL CNS08R54 [ TTCAAAAG TAGG CTCG CAACTATGAGT CCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCAGTCTGGGCGACTACGCCAAGGCAACGATCTGTATCGACCTTGCCTCCAGCCTGCTCGGACTGCCGTTCGACACCGACATGGCGATGAAGCTGTCCGGTCTGAGGAAAACGGCGTACGCGAACGGGCGTCGCACGCTGGAGAAGGTTCTGGACATTAACAAAACGCTCGGCATCGGGGAGATCTGTGTGCAGGTGGGCGTTACCCAGGTGCAGCAAGAAGCGGCCACACTGCTCGAAGCGTACAAGCAGTACGCCGGACAGGGCGGC GC CGGGATCGATTTTAGCCACCCGCAGTACGCGACGATGGCCGTGTTTCAGGCGTGCAAGCGGCAGAAGGTGAAA CGCCCAAAACGAAGCTGCTACCGTTCAGCCATCTCAAGCCGGCCCAGTGGAGCATGCTGGAGAAGAACTGGGAGAAATTTCTCGCCACCGGTGCGGCCGATATGGGACCGAAGGTTGCGAATACCAGGGGCGTTGTGGTGCAGGAGCTGGCAGCAAGGGGCGAAGAGGAGCAGGCCAATGGTGGTGGGAGCAGTGCGGCACGGAAGCACGCGAGTTCGGAAAAGATCGAACCGTACCAGAGCTGGAAGAAACGGATGCTCGAGAAGGCGTACCGGGAGCTGGAGCTGCAACGGGACAGTGGGTAAATGTCCCTTTTCTCAACCCCCCCACGAACCATCATTTCACGATCCCACATC ]
[-] EMBL CNS08R55 [ GCAGGCCAATGGGGGGGGGAGCAGTGCGGCACGGAAGCACGCGAGTCCGGAAAAGATCGAACCGTACCAGAGCTGGAAGAAACGGATGCTCGAGAAGGCGTACCGGGAGCTGGAGCTGCAACGGGACAGTGGGTAAATGTCCCTTTTCTCAACCCCCCCAGGAACCATCATTTCACGATGGGAGATGTTTTTTTACGCTTAGAGGTGTGTTGTTTCGAGGACGCAATGTTAGTGTTTGCACTGTGCCAATACATATCCAGATATTATTTACCGTGAATTGTTAAGACCCTAGCTTTACGTAAGGTGCATATTTGTATACATAATTAGTAATAAAAAA]
consensusID : consensus_5357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence
[CCCCGAGGTTATGGTTGCGATCTGTAAAAAAGGAAAAAGAGTGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGTGCCTCGCCAACTATGAGTCCCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCATGTCTGGGCTGACTACGCCAATGGCAACGATCTGTATCTGACCTTGCCTCCAGCCTGCTCTGGACTGCCTGTTCTGACACCTGACATGGCTGATGAAGCTGTCCTGGTCTGAGGAAAACGGCGTACTGCGAACTGGGCTGTCGCACGCTGGAGAAGGTTCTTGGCACATTAACAAAACNGCTCTGGCATCGCGGGAGATCTGTGTGCATGGTGGGCNGTTACCCAGGTGCCCGCAAAGAAGCTGGCCAACACTGCTCGAAGCTGTACAAGGCAGTACGCCAGGACAGGGGCTGGTGCNGAGCCCTGTGGAATCCGACTATTAAAGCCCAACCCCCGCAGATAACNGCGACATNGAATTGGGCCCGGTGTTTTCCAAGTGGACGTTGCCAAANCCGGGAGGACAGCNGGTTGACAAAACCGNCCCAAGNCAACGAAACTGGCTTGCGTTACAGACCGGTTCAAGGCACCATCTCCAAAANCCCTNGGNCCCACACGNCGCACCCTTGCCCTGNGCAGCGACAGNGAAACNCCTGGTGGACAGANACACGTACNCNCTCNNGCCCCACCCCGGAGCATGGCCGCCCCGCCTAATTAGNNCACACCATAACGGNGGGCTGCCGCANAAATCACCACGAGCGGGCACGNCNGGACCGGCTGTGCACTCGAAAGCCATGGGCCACCCCAACGCGGCTCCCCAACGACNANGNCAGCCNCGGCCACACCTGCGNANNTGTAGTAGAACAGCAACTGATGCNGCACACGNGAACCNCCGCCNCNGCCNCGA]
[+] EMBL AL931842 [CCCCGAGGTTATGGTTGCGATCTGTAAAAAAGGAAAAAGAGTGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGTGCCTCGCCAACTATGAGTCCCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCATGTCTGGGCTGACTACGCCAATGGCAACGATCTGTATCTGACCTTGCCTCCAGCCTGCTCTGGACTGCCTGTTCTGACACCTGACATGGCTGATGAAGCTGTCCTGGTCTGAGGAAAACGGCGTACTGCGAACTGGGCTGTCGCACGCTGGAGAAGGTTCTTGGCACATTAACAAAACNGCTCTGGCATCGCGGGAGATCTGTGTGCATGGTGGGCNGTTACCCAGGTGCCCGCAAAGAAGCTGGCCAACACTGCTCGAAGCTGTACAAGGCAGTACGCCAGGACAGGGGCTGGTGCNGAGCCCTGTGGAATCCGACTATTAAAGCCCAACCCCCGCAGATAACNGCGACATNGAATTGGGCCCGGTGTTTTCCAAGTGGACGTTGCCAAANCCGGGAGGACAGCNGGTTGACAAAACCGNCCCAAGNCAACGAAACTGGCTTGCGTTACAGACCGGTTCAAGGCACCATCTCCAAAANCCCTNGGNCCCACACGNCGCACCCTTGCCCTGNGCAGCGACAGNGAAACNCCTGGTGGACAGANACACGTACNCNCTCNNGCCCCACCCCGGAGCATGGCCGCCCCGCCTAATTAGNNCACACCATAACGGNGGGCTGCCGCANAAATCACCACGAGCGGGCACGNCNGGACCGGCTGTGCACTCGAAAGCCATGGGCCACCCCAACGCGGCTCCCCAACGACNANGNCAGCCNCGGCCACACCTGCGNANNTGTAGTAGAACAGCAACTGATGCNGCACACGNGAACCNCCGCCNCNGCCNCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5357#0 CCGGATCATCAGCTTCGCCGGAACGGACGGGAGCGTGTTGCGTGTGTAAACAAGGGTTGC 60
consensus_5357#1 ------------------------------------------CCCCGAGGTTATGGTTGC 18
* * ******
consensus_5357#0 GATC-GTAAAAA-GGAAAAAGAGCGAAACGATGGCCACCGGCGATAATAAACTGTTGCTT 118
consensus_5357#1 GATCTGTAAAAAAGGAAAAAGAGTGAAACGATGGCCACCGGCGATAATAAACTGTTGCTT 78
**** ******* ********** ************************************
consensus_5357#0 CAGCTTGTTCAAAAGCTAG-GCCTCGCCCACTATGAGTCCCTTGCGCCTAAAGCGACGGA 177
consensus_5357#1 CAGCTTGTTCAAAAGCTAGTGCCTCGCCAACTATGAGTCCCTTGCGCCTAAAGCGACGGA 138
******************* ******** *******************************
consensus_5357#0 ACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCA-GTCTGGGC-GAC 235
consensus_5357#1 ACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCATGTCTGGGCTGAC 198
*********************************************** ******** ***
consensus_5357#0 TACGCCAA-GGCAACGATCTGTATC-GACCTTGCCTCCAGCCTGCTC-GGACTGCC-GTT 291
consensus_5357#1 TACGCCAATGGCAACGATCTGTATCTGACCTTGCCTCCAGCCTGCTCTGGACTGCCTGTT 258
******** **************** ********************* ******** ***
consensus_5357#0 C-GACACC-GACACGGC-GATGAAGCTGTCC-GGCCTGAGGAAAACGGCGTAC-GCGAAC 346
consensus_5357#1 CTGACACCTGACATGGCTGATGAAGCTGTCCTGGTCTGAGGAAAACGGCGTACTGCGAAC 318
* ****** **** *** ************* ** ****************** ******
consensus_5357#0 GGG--CGCCGCACGCTGGAAAAGGTGCTGG--ACATTAACAAAACG--CTCGGCATCG-G 399
consensus_5357#1 TGGGCTGTCGCACGCTGGAGAAGGTTCTTGGCACATTAACAAAACNGCTCTGGCATCGCG 378
** * *********** ***** ** * ************* ******* *
consensus_5357#0 GGAGATTTGTGTGCA-GGTGGGCG-TTACCCAGGTGC--AGCAGGAAGC-GGCCA-CACT 453
consensus_5357#1 GGAGATCTGTGTGCATGGTGGGCNGTTACCCAGGTGCCCGCAAAGAAGCTGGCCAACACT 438
****** ******** ******* ************ * ***** ***** ****
consensus_5357#0 GCTCGAAGC-GTACAAG-CAGTACGCC-GGACAGGG--CGGCGGCGG---CGGCGGGATC 505
consensus_5357#1 GCTCGAAGCTGTACAAGGCAGTACGCCAGGACAGGGGCTGGTGCNGAGCCCTGTGGAATC 498
********* ******* ********* ******** ** * * * * ** ***
consensus_5357#0 -GATT-TTAG---CCACCCGCAGTACGCGACGATGGCCGTGTTTCAGGCGTGCAAGCGGC 560
consensus_5357#1 CGACTATTAAAGCCCAACCCCCGCAGATAACNGCGACATNGAATTGGGCCCG-GTGTTTT 557
** * *** *** ** * * * ** * * * * *** * *
consensus_5357#0 AGAAGGTGAAACCGCCCAAAACGAAGCTGCTACCGTTCAGCCATCTCAAGCCGGCCCAGT 620
consensus_5357#1 CCAAGTGGACGTTGCCAAANCCGGGAGGACAGCNGGTTGACAAAACCGNCCCAAGNCAAC 617
*** ** *** ** ** * * * * * * * ** **
consensus_5357#0 GGAGCATGCTGGAGAAGAACTGGGAGAAGTTTCTCGCCACCGGTGCGGCCGATATGGGAC 680
consensus_5357#1 GAAACTGGCTTGCG-----TTACAGACCGGTTCAAGGCACCATCTCCAAAANCCCTNGGN 672
* * * *** * * * * *** * **** * *
consensus_5357#0 CGAAGGTTGCGAATACCAGGGGCGTTGTGGTGCAGGAGCTGGCAGCAAGGGGCGAAGAGG 740
consensus_5357#1 CCCACACGNCGCACCCTT---GCCCTGNGCAGCGACAG--NGAAACNCCTGGTGGACAGA 727
* * ** * * ** ** * ** ** * * * ** * * **
consensus_5357#0 AGCAGGCCAATGGTGGTGGGAGCAGTGCGGCACGGAAGCACGCGAGTTCGGAAAAGATCG 800
consensus_5357#1 NACACGTACNCNCTCNNGCCC-CACCCCGGAGCATGGCCGCCCCGCCT--AATTAGNNCA 784
** * * * ** *** * * * * * * ** *
consensus_5357#0 AACCGTACCAGAG--CTGGAAGAAACGGATGCTCGAGAAGGCGTACCGGGAGCTGGAGCT 858
consensus_5357#1 CACCATAACGGNGGGCTGCCGCANAAATCACCACGAGCGGGCACGNCNGGA-CCGGCTGT 843
*** ** * * * *** * * * **** *** * *** * ** *
consensus_5357#0 GCAACGGGA--CAGTGGGTAAATGTCCCTTTTCTCAACCCCCCCACGAACCATCATTTCA 916
consensus_5357#1 GCACTCGAAAGCCATGGGCCA-----CCCCAACGCGGCTCCCCAACGACNANGNCAGCCN 898
*** * * * **** * ** * * * **** **** *
consensus_5357#0 CGATCCCACATCTTTTTTTACGCTTAGAGGTGTGTTGTTTCGAGGACGCAATGTTAGTGT 976
consensus_5357#1 CGGCCACACCTGCGNANNTGTAGTAGAACAGCAACTGATGCNG---CACACGNGAACCNC 955
** * *** * * * * ** * * * ** *
consensus_5357#0 TTGCACTGTGCCAATACATATCCAGATATTATTTACCGTGAATTGTTAAGACCCTAGCTT 1036
consensus_5357#1 CGCCNCNGCCNCGA---------------------------------------------- 969
* * * * *
consensus_5357#0 TACGTAAGGTGCATATTTGTATACATAATTAGTAATAAAAAA 1078
consensus_5357#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||