cluster # 5363

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Anopheles gambiae
cluster # 5363 cluster # 5363 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5363#0 length = 742 sequences # 1

consensus_5363#1 length = 562 sequences # 3

consensusID : consensus_5363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [AGAATCGCCCGAGGTTGCAAATGCTTCAACCGAGCCATTATCGTAACTTGATGCAATCGTGACCTGAAACCGATACGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCCTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTTGAGGATGCCCAGCGGCTGTGTCGGACGCTGAACATACCGCTGGAGGAGATCAACTTTGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACGCCAAATCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCGAGCGGCTTGGTGCTGATGCGATCGCTACCGGCCACTATGCCCGAACCAACTTTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCAAAGATCAAACGTTTTTCCTATCACAAATCTCCGCCGAAGCCCTGCGCCGCACAATTGTTCCCGATCGGTTGCCCTGACGAAGCCGCAAGTCAAGCGGCTAGCCATCGAGGTAGGCCTCGAAGCGTACGCACGCAAGAAGGAAAGCATGGGCATCTGTTTCGTGGGCAAGCGTTCGTTCCAGCAGTTTATCGGCG]

[+] EMBL AL931960             [AGAATCGCCCGAGGTTGCAAATGCTTCAACCGAGCCATTATCGTAACTTGATGCAATCGTGACCTGAAACCGATACGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCCTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTTGAGGATGCCCAGCGGCTGTGTCGGACGCTGAACATACCGCTGGAGGAGATCAACTTTGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACGCCAAATCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCGAGCGGCTTGGTGCTGATGCGATCGCTACCGGCCACTATGCCCGAACCAACTTTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCAAAGATCAAACGTTTTTCCTATCACAAATCTCCGCCGAAGCCCTGCGCCGCACAATTGTTCCCGATCGGTTGCCCTGACGAAGCCGCAAGTCAAGCGGCTAGCCATCGAGGTAGGCCTCGAAGCGTACGCACGCAAGAAGGAAAGCATGGGCATCTGTTTCGTGGGCAAGCGTTCGTTCCAGCAGTTTATCGGCG]




>consensus_5363#0
AGAATCGCCCGAGGTTGCAAATGCTTCAACCGAGCCATTATCGTAACTTGATGCAATCGT
GACCTGAAACCGATACGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGG
CGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGG
TGCCTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGA
TTTTGAGGATGCCCAGCGGCTGTGTCGGACGCTGAACATACCGCTGGAGGAGATCAACTT
TGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAAT
TACGCCAAATCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCA
TGCCCGCGAGCGGCTTGGTGCTGATGCGATCGCTACCGGCCACTATGCCCGAACCAACTT
TGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGA
TCCGATCAAAGATCAAACGTTTTTCCTATCACAAATCTCCGCCGAAGCCCTGCGCCGCAC
AATTGTTCCCGATCGGTTGCCCTGACGAAGCCGCAAGTCAAGCGGCTAGCCATCGAGGTA
GGCCTCGAAGCGTACGCACGCAAGAAGGAAAGCATGGGCATCTGTTTCGTGGGCAAGCGT
TCGTTCCAGCAGTTTATCGGCG

consensusID : consensus_5363#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 562
fasta sequence

                              [CTAGCACCGGCAAAATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCGTGACCGAAACCGAGGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCTTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATA-CCGCTGGAGGAGATCAACTTTGTGAA-GGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACCCCAAACCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCGAGCGGCTTGGTGCTGATGCGGTCGCTACCGGCCACTATGCCCGTACCAACTTTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCAAAGATCAAACGTTTTTCCTGTC]

[+] EMBL CNS08PWL             [CTAGCACCGGCAAAATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCGTGACCGAAACCGAGGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCTTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATA CCGCTGGAGGAGATCAACTTTGTGAA GGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACCCCAAACCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCGAGCGGCTTGGTGCTGATGCGGTCGCTACCGGCCACTATGCCCGTACCAACTTTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCAAAGATCAAACGTTTTTCCTGTC]
[+] EMBL CNS08I9F             [             AATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCGTGACCGAAACCGAGGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCTTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATA CCGCTGGAGGAGATCAACTTTGTGAA GGACTACTGGGTGGAGGTGTTT                                                                                                                                                                                                                                                  ]
[+] EMBL CNS094ZS             [                                                                                                                                                                                                      TCGATGAG CCGGCTACTGTTCCGGGGAGCAGGATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATACCCGCTGGAGGAGATCAACTTTGTGAAGGGACTACTGGGTGGAGGTGTT                                                                                                                                                                                                                                                   ]




>consensus_5363#1
CTAGCACCGGCAAAATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCGTGACCGA
AACCGAGGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAG
ATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCTTTTA
TGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTCGAGG
ATGCCCAGCGGCTATGCCGAACGCTAAGCATACCGCTGGAGGAGATCAACTTTGTGAAGG
ACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACCCCAA
ACCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCG
AGCGGCTTGGTGCTGATGCGGTCGCTACCGGCCACTATGCCCGTACCAACTTTGGCCCAT
TTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCA
AAGATCAAACGTTTTTCCTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5363#0      AGAATCGCCCGAGGTTGCAAA-TGCTTCAACCGAGCCATTATCGTAACTTGATGCAATCG 59
consensus_5363#1      -------CTAGCACCGGCAAAATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCG 53
                             *  *     ***** ** * *** **** ************************

consensus_5363#0      TGACCTGAAACCGATACGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCG 119
consensus_5363#1      TGACC-GAAACCGA-GGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCG 111
                      ***** ********   *******************************************

consensus_5363#0      GCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCG 179
consensus_5363#1      GCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCG 171
                      ************************************************************

consensus_5363#0      GTGCCTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGG 239
consensus_5363#1      GTGCTTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGG 231
                      **** *******************************************************

consensus_5363#0      ATTTTGAGGATGCCCAGCGGCTGTGTCGGACGCTGAACATACCGCTGGAGGAGATCAACT 299
consensus_5363#1      ATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATACCGCTGGAGGAGATCAACT 291
                      **** ***************** ** ** ***** * ***********************

consensus_5363#0      TTGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAA 359
consensus_5363#1      TTGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAA 351
                      ************************************************************

consensus_5363#0      TTACGCCAAATCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACC 419
consensus_5363#1      TTACCCCAAACCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACC 411
                      **** ***** *************************************************

consensus_5363#0      ATGCCCGCGAGCGGCTTGGTGCTGATGCGATCGCTACCGGCCACTATGCCCGAACCAACT 479
consensus_5363#1      ATGCCCGCGAGCGGCTTGGTGCTGATGCGGTCGCTACCGGCCACTATGCCCGTACCAACT 471
                      ***************************** ********************** *******

consensus_5363#0      TTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGG 539
consensus_5363#1      TTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGG 531
                      ************************************************************

consensus_5363#0      ATCCGATCAAAGATCAAACGTTTTTCCTATCACAAATCTCCGCCGAAGCCCTGCGCCGCA 599
consensus_5363#1      ATCCGATCAAAGATCAAACGTTTTTCCTGTC----------------------------- 562
                      **************************** **                             

consensus_5363#0      CAATTGTTCCCGATCGGTTGCCCTGACGAAGCCGCAAGTCAAGCGGCTAGCCATCGAGGT 659
consensus_5363#1      ------------------------------------------------------------
                                                                                  

consensus_5363#0      AGGCCTCGAAGCGTACGCACGCAAGAAGGAAAGCATGGGCATCTGTTTCGTGGGCAAGCG 719
consensus_5363#1      ------------------------------------------------------------
                                                                                  

consensus_5363#0      TTCGTTCCAGCAGTTTATCGGCG 742
consensus_5363#1      -----------------------