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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 931 fasta sequence
[AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAAAAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAAATAAAGTTAGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGTGTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAACCCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAAAGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAACCAGATGAAATGAACAATTTGAAATAAAGACGAT]
[+] EMBL BX612666 [AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAAAAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAAATAAAGTTAGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGTGTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTT ]
[+] EMBL BX612378 [ ATCTAATATAAAATCGAAGAGGTTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAACCCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAAAGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAACCAGATGAAATGAACAATTTGAAATAAAGACGAT]
consensusID : consensus_5375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 568 fasta sequence
[CCCGA-GTCAATAGCATGTTTCTAAAAT-AACGTTTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAA-AAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGTTCCGGCGATAGTAACGAAACGTCTCGGC]
[+] EMBL AL932136 [CCCGA GTCAATAGCATGTTTCTAAAAT AACGTTTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAA AAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGTTCCGGCGATAGTAACGAAACGTCTCGGC]
[+] EMBL AL933780 [ CGAGGNCAATAGCATGTTTCTAAAATAAACG TTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAA ATAAAGTTA GAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAACAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTTTATCGTTCCGGCGATAGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5375#0 AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAA 60
consensus_5375#1 --------------------------------------------------------CCCG 4
*
consensus_5375#0 AAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAA 120
consensus_5375#1 AGTCAA--TAGCATGTTTCTAAAATAA-CGTTTA-TGTTTACGACCAAATCAAAACTAAA 60
* *** ******************* ****** *************************
consensus_5375#0 CAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAA-ATAAAGTTA-GAG 178
consensus_5375#1 CAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAG 120
********************************************** ********* ***
consensus_5375#0 AAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGT 238
consensus_5375#1 AAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGT 180
******************************************************** ***
consensus_5375#0 GTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCC 298
consensus_5375#1 GTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCC 240
***************** ******************************************
consensus_5375#0 AGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATA 358
consensus_5375#1 AGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATA 300
************************************************************
consensus_5375#0 CAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAA 418
consensus_5375#1 CAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAA 360
************************************************************
consensus_5375#0 ACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAA 478
consensus_5375#1 ACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAA 420
************************************************************
consensus_5375#0 CCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAA 538
consensus_5375#1 CCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAA 480
************************************************************
consensus_5375#0 GCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGT 598
consensus_5375#1 GCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGT 540
************* ************************ ************* ******
consensus_5375#0 TCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACA 658
consensus_5375#1 TCCGGCGATAGTAACGAAACGTCTCGGC-------------------------------- 568
****************************
consensus_5375#0 AATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGA 718
consensus_5375#1 ------------------------------------------------------------
consensus_5375#0 AACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAAC 778
consensus_5375#1 ------------------------------------------------------------
consensus_5375#0 CCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAA 838
consensus_5375#1 ------------------------------------------------------------
consensus_5375#0 AGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAAC 898
consensus_5375#1 ------------------------------------------------------------
consensus_5375#0 CAGATGAAATGAACAATTTGAAATAAAGACGAT 931
consensus_5375#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||