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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1180 fasta sequence
[CCGCCCACGCGTCCGCGGACGCGTGGGATCGAGTTTGGCAGCAAATCGAGCGAAACGTCGACCGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAACGTGCCACCGGTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAGAAAATGGCTACAGCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCCGCAGCAGCAGCAGCAGCAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATGGACCGGACGCGACAACCCGCGACGTACCCAACGGGCAAAGCGACCGTCATCCAGGGCCATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACGGTCAAGACGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGAGAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGAGAATTTGGAGCGTGCCCGAAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACAGCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGCACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCTTTTCCGGCCCGAAAACGAACAGCTTTGCCGAATTACACTCCGCCTCCTGGCAAACGTCCGCCGCGATAGCGTTCATCGAAAATCAAATCAAGATCTGCGAAATGATTGCGTCGCCGGCCGAGCTGAAGTACTGGTACTCGATGCTGGGCTTCCAGCTGGCACTGAACGGCAGCGAGGAGAAGATACGCCAGGTGCTGGACGATCTGC]
[+] EMBL BM592130 [CCGCCCACGCGTCCGCGGACGCGTGGGATCGAGTTTGGCAGCAAATCGAGCGAAACGTCGACCGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAACGTGCCACCGGTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAGAAAATGGCTACAGCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCCGCAGCAGCAGCAGCAGCAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATGGACCGGACGCGACAACCCGCGACGTACCCAACGGGCAAAGCGACCGTCATCCAGGGCCATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACGGTCAAGACGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGAGAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGG ]
[+] EMBL BM575551 [ ccGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGAGAATTTGGAGCGTGCCCGAAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACAGCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGCACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCTTTTCCGGCCCGAAAACGAACAGCTTTGCCGAATTACACTCCGCCTCCTGGCAAACGTCCGCCGCGATAGCGTTCATCGAAAATCAAATCAAGATCTGCGAAATGATTGCGTCGCCGGCCGAGCTGAAGTACTGGTACTCGATGCTGGGCTTCCAGCTGGCACTGAACGGCAGCGAGGAGAAGATACGCCAGGTGCTGGACGATCTGC]
consensusID : consensus_5378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[TCCCCGAGGTTNGAAACGTCGACGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAACGTGCCACCGGTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAGAAAATGGCTACAGCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCAGCAGCAGCAACAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATGGACCGGACGCGACAACCCGCGACGTACCCAACGGGCAAAGCGACCGTCATCCAGGGCCATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACGGTCAAGACGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGAGAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCTTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGC]
[+] EMBL AL933324 [TCCCCGAGGTTNGAAACGTCGACGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAACGTGCCACCGGTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAGAAAATGGCTACAGCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCAGCAGCAGCAACAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATGGACCGGACGCGACAACCCGCGACGTACCCAACGGGCAAAGCGACCGTCATCCAGGGCCATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACGGTCAAGACGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGAGAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCTTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGC]
consensusID : consensus_5378#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[CCCGAGGTTATTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGCGAATTTGGAGCGTGCCCGAAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACAGCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGCACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCATTTATCCGGCCCGAAAACGAACAGCTTTGCCGAATTACACTCCGGCGCCTGGCAAACGTCCGCCGCGATAGCGTCATCGAAAATCAAATCAA]
[+] EMBL AL932319 [CCCGAGGTTATTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGCGAATTTGGAGCGTGCCCGAAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACAGCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGCACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCATTTATCCGGCCCGAAAACGAACAGCTTTGCCGAATTACACTCCGGCGCCTGGCAAACGTCCGCCGCGATAGCGTCATCGAAAATCAAATCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5378#0 CCGCCCACGCGTCCGCGGACGCGTGGGATCGAGTTTGGCAGCAAATCGAGCGAAACGTCG 60
consensus_5378#1 -------------------------------------TCCCCGAG--GTTNGAAACGTCG 21
consensus_5378#2 ------------------------------------------------------------
consensus_5378#0 ACCGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAA 120
consensus_5378#1 AC-GTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAA 80
consensus_5378#2 --------------------------------CCCGAGGTTATTTGCCGTTGGGGCGAAG 28
** * * ** * * ** *
consensus_5378#0 CGTGCCACCG-GTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAG--AAAATGGCTACA 177
consensus_5378#1 CGTGCCACCG-GTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAG--AAAATGGCTACA 137
consensus_5378#2 TATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACG 88
*** * ** ** * * * *** * *** ** ** * ** **
consensus_5378#0 GCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCCGCAGCAGCAGCAGCAG 237
consensus_5378#1 GCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACC------AGCAGCAGCAA 191
consensus_5378#2 CCGGT-CTTTCCCGTGCTCAGCC--TCACGAGCCCGGCCGTAC-------TGAGCGCCTT 138
* * * *** * ** * ** *** *** * *** *
consensus_5378#0 CAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATG 297
consensus_5378#1 CAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATG 251
consensus_5378#2 TAGCTCCAACTCACAGCTGGCTGGCGT-TGTTACCGAAAGTGGCATACTGCGAATT--TG 195
*** ** ** * *** ** * * * * * ** * * * **
consensus_5378#0 GACCGGACGCGACAACCCGCGACGTACC--CAACGGGCAAAGCGACCGTCATCCAGGGCC 355
consensus_5378#1 GACCGGACGCGACAACCCGCGACGTACC--CAACGGGCAAAGCGACCGTCATCCAGGGCC 309
consensus_5378#2 GAGCGTGCCCGAAAAAGCG-GTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAA 254
** ** * *** ** ** * * *** * ** ** ** **** **
consensus_5378#0 ATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACG--GTCAAG-A 412
consensus_5378#1 ATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACG--GTCAAG-A 366
consensus_5378#2 GTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATG 314
** * * * ** ** * ** * * ** * *** *
consensus_5378#0 CGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGA 472
consensus_5378#1 CGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGA 426
consensus_5378#2 GGTCGTCTTACA-GCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCC-GA 372
***** ** *** * * * * * * * * * *** ** **
consensus_5378#0 GAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGT 532
consensus_5378#1 GAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGT 486
consensus_5378#2 CCCGGTCATACGGCACGGTTT---GATCGGCAA-CAAAACCAACGCC-CCGGTGCGCAAC 427
* * * ***** * *** * * * * *** ** *** *
consensus_5378#0 ATGCGATCGTATGCAGCCAGGACCATACGATCCG--GATGGTGGACATCAAGAC-GGGCA 589
consensus_5378#1 ATGCGATCGTATGCAGCCAGGACCATACGATCCG--GATGGTGGACATCAAGAC-GGGCA 543
consensus_5378#2 ATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCATTTATCCGGCCCGAAAA 487
** * **** * * ** **** *** * * *** * * * *
consensus_5378#0 CGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCA 649
consensus_5378#1 CGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCTTTTAGCTCCA 603
consensus_5378#2 CGAACAGCTTTGCCGAATT-ACACTCCGGCGCCTGGCAAACGTCCGCCGCGATAGCGTCA 546
** **** *** * * *** * *** *** * ** **** **
consensus_5378#0 ACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGAGAATTTGGAGCGTGCCCG 709
consensus_5378#1 ACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGC------------------------- 638
consensus_5378#2 TCGAAAATCAAATCAA-------------------------------------------- 562
* * * *
consensus_5378#0 AAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAA 769
consensus_5378#1 ------------------------------------------------------------
consensus_5378#2 ------------------------------------------------------------
consensus_5378#0 TTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACA 829
consensus_5378#1 ------------------------------------------------------------
consensus_5378#2 ------------------------------------------------------------
consensus_5378#0 GCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGC 889
consensus_5378#1 ------------------------------------------------------------
consensus_5378#2 ------------------------------------------------------------
consensus_5378#0 ACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCT 949
consensus_5378#1 ------------------------------------------------------------
consensus_5378#2 ------------------------------------------------------------
consensus_5378#0 CAACGATACAATCGTACGGCAGCTTTTCCGGCCCGAAAACGAACAGCTTTGCCGAATTAC 1009
consensus_5378#1 ------------------------------------------------------------
consensus_5378#2 ------------------------------------------------------------
consensus_5378#0 ACTCCGCCTCCTGGCAAACGTCCGCCGCGATAGCGTTCATCGAAAATCAAATCAAGATCT 1069
consensus_5378#1 ------------------------------------------------------------
consensus_5378#2 ------------------------------------------------------------
consensus_5378#0 GCGAAATGATTGCGTCGCCGGCCGAGCTGAAGTACTGGTACTCGATGCTGGGCTTCCAGC 1129
consensus_5378#1 ------------------------------------------------------------
consensus_5378#2 ------------------------------------------------------------
consensus_5378#0 TGGCACTGAACGGCAGCGAGGAGAAGATACGCCAGGTGCTGGACGATCTGC 1180
consensus_5378#1 ---------------------------------------------------
consensus_5378#2 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||