cluster # 5386

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Anopheles gambiae
cluster # 5386 cluster # 5386 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5386#0 length = 807 sequences # 2

consensus_5386#1 length = 443 sequences # 2

consensusID : consensus_5386#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 807
fasta sequence

                              [TGTTCCAGACANTGCCATCTACGTTGACATTGGAAGCCACCAAAAAGCGGAAGAGCTTCCACATATCAAAATATTCAAGTACACTGGCTCGATTAACTTTGCGAACAAAACTAATTTCAAGAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGAATTAGTGACTTANGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACTCAGATTCCTCCAAACAGAGAATACTTATCTTTGCTCCTAGGTTTACGAAAAAGCAACAAGTACTTCATTCTGGTGTTTCGAAGATTGATTACATAGGCAATATTCTTGATGAATCAGGATAAGCAATCCCCTTACGAACAGGTTAAACCTCACGGGCTTTCTAGAGTCTCGACTATTTTAGCCGGGTATAAGCATCGTTTTTTGACG]

[+] EMBL BX627055             [TGTTCCAGACANTGCCATCTACGTTGACATTGGAAGCCACCAAAAAGCGGAAGAGCTTCCACATATCAAAATATTCAAGTACACTGGCTCGATTAACTTTGCGAACAAAACTAATTTCAAGAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGAATTAGTGACTTANGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACT                                                                                                                                                                                                               ]
[+] EMBL BX628385             [                                                                                                                                                                                                                                                     CACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGAATTAGTGACTTAGGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACTCAGATTCCTCCAAACAGAGAATACTTATCTTTGCTCCTAGGTTTACGAAAAAGCAACAAGTACTTCATTCTGGTGTTTCGAAGATTGATTACATAGGCAATATTCTTGATGAATCAGGATAAGCAATCCCCTTACGAACAGGTTAAACCTCACGGGCTTTCTAGAGTCTCGACTATTTTAGCCGGGTATAAGCATCGTTTTTTGACG]




>consensus_5386#0
TGTTCCAGACANTGCCATCTACGTTGACATTGGAAGCCACCAAAAAGCGGAAGAGCTTCC
ACATATCAAAATATTCAAGTACACTGGCTCGATTAACTTTGCGAACAAAACTAATTTCAA
GAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCG
ATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAG
CGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGA
AAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCT
GCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGT
TATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATA
TAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGA
ATTAGTGACTTANGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACT
CAGATTCCTCCAAACAGAGAATACTTATCTTTGCTCCTAGGTTTACGAAAAAGCAACAAG
TACTTCATTCTGGTGTTTCGAAGATTGATTACATAGGCAATATTCTTGATGAATCAGGAT
AAGCAATCCCCTTACGAACAGGTTAAACCTCACGGGCTTTCTAGAGTCTCGACTATTTTA
GCCGGGTATAAGCATCGTTTTTTGACG

consensusID : consensus_5386#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 443
fasta sequence

                              [GAATCGCCCGAGGTATTACTTTGCGAACAGACTAATTCAGAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCAAGTGCCTTCTACGAACAAATCGAA]

[+] EMBL AL932622             [GAATCGCCCGAGGTATTACTTTGCGAACAGACTAATTCAGAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCAAGTGCCTTCTACGAACAAATCGAA]
[+] EMBL BX603414             [                                                                                               CTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGC                                                                     ]




>consensus_5386#1
GAATCGCCCGAGGTATTACTTTGCGAACAGACTAATTCAGAAAGCTCTATACAAGGAAAC
CAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGG
TCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGC
TGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCT
TTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGA
AGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGA
TTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCAA
GTGCCTTCTACGAACAAATCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5386#0      TGTTCCAGACANTGCCATCTACGTTGACATTGGAAGCCACCAAAAAGCGGAAGAGCTTCC 60
consensus_5386#1      ------------------------------------------------------------
                                                                                  

consensus_5386#0      ACATATCAAAATATTCAAGTACACTGGCTCGATTAACTTTGCGAACAAAACTAATTTCAA 120
consensus_5386#1      ---------------GAATCGCCCGAGGT--ATTA-CTTTGCGAACAGA-CTAATTC--A 39
                                      **   * *  * *  **** *********** * ******   *

consensus_5386#0      GAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCG 180
consensus_5386#1      GAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCG 99
                      ************************************************************

consensus_5386#0      ATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAG 240
consensus_5386#1      ATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAG 159
                      ************************************************************

consensus_5386#0      CGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGA 300
consensus_5386#1      CGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGA 219
                      ************************************************************

consensus_5386#0      AAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCT 360
consensus_5386#1      AAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCT 279
                      ************************************************************

consensus_5386#0      GCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGT 420
consensus_5386#1      GCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGT 339
                      ************************************************************

consensus_5386#0      TATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATA 480
consensus_5386#1      TATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATA 399
                      ************************************************************

consensus_5386#0      TAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGA 540
consensus_5386#1      TAATATAATGCAAAATTTCAAGTGCCTTCTACGAACAAATCGAA---------------- 443
                      ******************** ***********************                

consensus_5386#0      ATTAGTGACTTANGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACT 600
consensus_5386#1      ------------------------------------------------------------
                                                                                  

consensus_5386#0      CAGATTCCTCCAAACAGAGAATACTTATCTTTGCTCCTAGGTTTACGAAAAAGCAACAAG 660
consensus_5386#1      ------------------------------------------------------------
                                                                                  

consensus_5386#0      TACTTCATTCTGGTGTTTCGAAGATTGATTACATAGGCAATATTCTTGATGAATCAGGAT 720
consensus_5386#1      ------------------------------------------------------------
                                                                                  

consensus_5386#0      AAGCAATCCCCTTACGAACAGGTTAAACCTCACGGGCTTTCTAGAGTCTCGACTATTTTA 780
consensus_5386#1      ------------------------------------------------------------
                                                                                  

consensus_5386#0      GCCGGGTATAAGCATCGTTTTTTGACG 807
consensus_5386#1      ---------------------------