These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 690 fasta sequence [CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAGGAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCGTCTAAAAACGGGCGCCGAAAATCGAAAAAA] [+] EMBL BM590174 [CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAGGAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCGTCTAAAAACGGGCGCCGAAAATCGAAAAAA] [+] EMBL BM579712 [CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAGGAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCGTCTACAAACGGGCGCCG ] [+] EMBL BM588760 [ ccGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGGGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGGAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTAGCACGGATAGATGAACAGAACAATAAGCTCTTGCAGGAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGG ] consensusID : consensus_5387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [GATCGCCCAGTAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGA] [+] EMBL AL932666 [GATCGCCCAGTAAATATGGCTGGAAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGTTTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGGTGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACGAAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACAAAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGTTCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAAGAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTTACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCATGGACTGAAACTGAACGGCAAGTTGGCACGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5387#0 CCGGTGTTTCTTTGTGGCAATATGGATTTTGCCAAAAACATACTCCTAAAATATGGCTGG 60 consensus_5387#1 -------------------------------------GATCGCCCAGTAAATATGGCTGG 23 * * ************ consensus_5387#0 AAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGT 120 consensus_5387#1 AAAGAAGGTGAAGGGCTCGGGAAAAACTCGGACGGCATTACGGCGCCGCTCAAAGCCAGT 83 ************************************************************ consensus_5387#0 TTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGG 180 consensus_5387#1 TTCAAGTTTAGCACTAGTGGAATTGGAGCCGACAAGGTCAGTGACGCTAAAAACAATTGG 143 ************************************************************ consensus_5387#0 TGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACG 240 consensus_5387#1 TGGGAGCGTGTTTACAACGAGGCGGCCGGCAATATTGAGGTTGAATCTGGCGGAAACACG 203 ************************************************************ consensus_5387#0 AAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACA 300 consensus_5387#1 AAAACCGAAGTGCCGGTTTCACTTCGGCAGGTAGATGCGGAAGCGGTTGAAATTACCACA 263 ************************************************************ consensus_5387#0 AAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGT 360 consensus_5387#1 AAGAGCTACTCGGTAAACAAACTGAAGCGAAAGGATATGGATCAGCAAGGTCCGAAAGGT 323 ************************************************************ consensus_5387#0 TCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAA 420 consensus_5387#1 TCAATGTACGGTAGCGTGTTTCTTAAAGCCTCCACCCTGTTGGGAGGTCTTGGGCGCGAA 383 ************************************************************ consensus_5387#0 GAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTT 480 consensus_5387#1 GAAGACATGCCGGATCATGTTCGCACGGAGGATATCGAGTTTGCTCCCGTTAAAACTCTT 443 ************************************************************ consensus_5387#0 ACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCAT 540 consensus_5387#1 ACGGATGAGGAGCTGTTTGCGGCGTGTGGTGGCCGAACGGCCCACAAAGGTGCTCGTCAT 503 ************************************************************ consensus_5387#0 GGACTGAAACTGAACGGCAAGTTGGCACGGATAGATGAACAGAACAATAAGCTCTTGCAG 600 consensus_5387#1 GGACTGAAACTGAACGGCAAGTTGGCACGGA----------------------------- 534 ******************************* consensus_5387#0 GAGTTGGAGAGCAGATCTTTCGAGGATGTGATAAAGTCTAGTGATTGGCAGGTACAGGCG 660 consensus_5387#1 ------------------------------------------------------------ consensus_5387#0 TCTAAAAACGGGCGCCGAAAATCGAAAAAA 690 consensus_5387#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||