These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence [CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAACAAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTCGTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAACTATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTTCTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNCCCTATCTATTGCT] [+] EMBL BX627667 [CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAACAAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTCGTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAACTATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTTCTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNCCCTATCTATTGCT] consensusID : consensus_5388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [ACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACG] [+] EMBL BX611035 [ACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACG] [+] EMBL BX613182 [ AGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGT ] consensusID : consensus_5388#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGATCACACCGGAG] [+] EMBL BX609493 [AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGATCACACCGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5388#1 ---------------------------------ACCAGGGCACGGGAAAAACCGAACAGT 27 consensus_5388#2 AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGT 60 consensus_5388#0 ------------------------------------------------------------ consensus_5388#1 AGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAA 87 consensus_5388#2 AGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAA 120 consensus_5388#0 ------------------------------------------------------------ consensus_5388#1 GTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGT 147 consensus_5388#2 GTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGT 180 consensus_5388#0 ------------------------------------------------------------ consensus_5388#1 AGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 207 consensus_5388#2 AGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 240 consensus_5388#0 -----CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 55 ******************************************************* consensus_5388#1 AATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTA 267 consensus_5388#2 AATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTA 300 consensus_5388#0 AATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTA 115 ***************************** ****************************** consensus_5388#1 AAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAA 327 consensus_5388#2 AAGTGAAACATAAAACAAAA---------------------------------------- 320 consensus_5388#0 AAGTGAAACATAAAACAAAAC--------------------------------------- 136 ******************** consensus_5388#1 GGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATAT 387 consensus_5388#2 --------------------------------------CAAAAAATAGGAAAGTGCATAT 342 consensus_5388#0 -----------------------------------AAACAAAAAATAGGAAAGTGCATAT 161 ********************** consensus_5388#1 ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 447 consensus_5388#2 ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 402 consensus_5388#0 ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 221 ************************************************************ consensus_5388#1 CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 507 consensus_5388#2 CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 462 consensus_5388#0 CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 281 ************************************************************ consensus_5388#1 TTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGT 567 consensus_5388#2 TTACTCAAACGTATGCGA--TCACACCGGAG----------------------------- 491 consensus_5388#0 TTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGT 341 ****************** * * * consensus_5388#1 GCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGG-CAGTGCGGAAGATCCCAGATTGT 626 consensus_5388#2 ------------------------------------------------------------ consensus_5388#0 GCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGT 401 consensus_5388#1 TAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTA 686 consensus_5388#2 ------------------------------------------------------------ consensus_5388#0 TAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTA 461 consensus_5388#1 TCTAAACATTTGCCCATCGCTCCTGCTGGACACG-------------------------- 720 consensus_5388#2 ------------------------------------------------------------ consensus_5388#0 TCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAAC 521 consensus_5388#1 ------------------------------------------------------------ consensus_5388#2 ------------------------------------------------------------ consensus_5388#0 AAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTC 581 consensus_5388#1 ------------------------------------------------------------ consensus_5388#2 ------------------------------------------------------------ consensus_5388#0 GTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAAC 641 consensus_5388#1 ------------------------------------------------------------ consensus_5388#2 ------------------------------------------------------------ consensus_5388#0 TATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTT 701 consensus_5388#1 ------------------------------------------------------------ consensus_5388#2 ------------------------------------------------------------ consensus_5388#0 CTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNC 761 consensus_5388#1 ------------- consensus_5388#2 ------------- consensus_5388#0 CCTATCTATTGCT 774 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||