These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1317 fasta sequence [CCGGAGAGAAGCAGAGCTACTACGTAACGGACACCCACGATCGATTTATGTTTTCGCTTGTGTTTTCGTTCGCTTGTCCACGATAACCACGATTCAATGTTGACGCATACACTTGGAGAGATAGTGACCGTGCAATAGTAGTAACGCCGCGCGCAGTAATGAGGTTTTGCGAGCGATCGTGCGATTTGGAATGAAGATCGCTGAACCATCTCCCGAAGAAGAAGCACGCAAGCGAGCGAGCGTTAGCAGAAAGAGCAAGAGATTGATGAAATTATGTTTTTATTGTTGCAAATATACATATAATGCACTAACTAAGCAAGTTGTACATTGTAGAAAGTTGTATTTAAACGAAAAAAAAAAAACAATGCGAAACAAACCTAAGGCGCGCAGGCAGAGATACAATTTTGGGGGAGACACTTATCGATCGATCTAAAACATTATAGTAGGAAGACAAAATGGAACCATAAAACAAACTTCATTCTCATTCGATGCTTCGATGCAGTTTCATGCACTTCTTACAACATAGAAAACAGCAAAAAAACAATTTTGATTCATCACACAAAACACGCAAAGTGTAGTATGAGATGACCTGCGCACGCCAAACTTCATTCATAACTTTTTTCTTTTCCCCCCTCCTTCATAGTAGAGTGAAGATCGCTAGTCTACGAACAAGATATAATATATATTTAGCTTAATATGTAATAGCAGGCATATATACATACATATACTGGCTGGGAGGACATTCCAAACAAATTGAGAGCGTAAACAAGAAAAAAAAGGAACAAGGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAAACCCATAAGCAATCGACCATTAGGCGCAACACAAACATCGCCGGCATAGCGTACAGGAAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGGAAAGGCGACCCAAATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGGAGGATCAAACGCTGCTCCCTCTCGTATACCTCCATTGATGGTGTGTTCCGCGGCCCCGGGGCAAGACAGCCTGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACATATACCAGGGGGAAGCGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAGCTGCATAATAAGCTCTGCACCCCTTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACGGTATAATATAATCTAAAAAACACACAAATATTAAACCAGATATTCCCCCCGCCCCAACCCAA] [+] EMBL BM590546 [CCGGAGAGAAGCAGAGCTACTACGTAACGGACACCCACGATCGATTTATGTTTTCGCTTGTGTTTTCGTTCGCTTGTCCACGATAACCACGATTCAATGTTGACGCATACACTTGGAGAGATAGTGACCGTGCAATAGTAGTAACGCCGCGCGCAGTAATGAGGTTTTGCGAGCGATCGTGCGATTTGGAATGAAGATCGCTGAACCATCTCCCGAAGAAGAAGCACGCAAGCGAGCGAGCGTTAGCAGAAAGAGCAAGAGATTGATGAAATTATGTTTTTATTGTTGCAAATATACATATAATGCACTAACTAAGCAAGTTGTACATTGTAGAAAGTTGTATTTAAACGAAAAAAAAAAAACAATGCGAAACAAACCTAAGGCGCGCAGGCAGAGATACAATTTTGGGGGAGACACTTATCGATCGATCTAAAACATTATAGTAGGAAGACAAAATGGAACCATAAAACAAACTTCATTCTCATTCGATGCTTCGATGCAGTTTCATGCACTTCTTACAACATAGAAAACAGCAAAAAAACAATTTTGATTCATCACACAAAACACGCAAAGTGTAGTATGAGATGACCTGCGCACGCCAAACTTCATTCATAACTTTTTTCTTTTCCCCCCTCCTTCATAGTAGAGTGAAGATCGCTAGTCTACGAACAAGATATAATATATATTT ] [+] EMBL BX616629 [ GAGATGACCTGCGCACGCCAAACTTCATTCATAACTTTTTTCTTTTCCCCCCTCCTTCATAGTAGAGTGAAGATCGCTAGTCTACGAACAAGATATAATATATATTTAGCTTAATATGTAATAGCAGGCATATATACATACATATACTGGCTGGGAGGACATTCCAAACAAATTGAGAGCGTAAACAAGAAAAAAAAGGAACAAGGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAAACCCATAAGCAATCGACCATTAGGCGCAACACAAACATCGCCGGCATAGCGTACAGGAAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGGAAAGGCGACCCAAATCTCCCGCAATTGTTATTTGATT ] [+] EMBL BX616491 [ AATCGACCATTAGGCGCAACACAAACATCGCCGGCATAGCGTACAGGAAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGGAAAGGCGACCCAAATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGGAGGATCAAACGCTGCTCCCTCTCGTATACCTCCATTGATGGTGTGTTCCGCGGCCCCGGGGCAAGACAGCCTGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACATATACCAGGGGGAAGCGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAGCTGCATAATAAGCTCTGCACCCCTTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACGGTATAATATAATCTAAAAAACACACAAATATTAAACCAGATATTCCCCCCGCCCCAACCCAA] consensusID : consensus_5395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [CCCCGAGGTTAAAAGGAACAGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAACCCATAAGCAATCGACCATTAGGCGCAACACAAACATTGCCGACAAAGCGTTGAAGAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGAAAAGGCGACCCACATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGGAGGATCGCACGCTGCTCCCTCTCGTATACCTCCACTCATGGTGTGTTCCGCGTCCCCGGGAAGGGCAAGACAGCGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACACATACCAGGGGAGGAGTGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAGCTGCATAATAAGCTCTGCACCCCGTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACGGTATAATA] [+] EMBL AL932728 [CCCCGAGGTTAAAAGGAACAGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAACCCATAAGCAATCGACCATTAGGCGCAACACAAACATTGCCGACAAAGCGTTGAAGAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGAAAAGGCGACCCACATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGGAGGATCGCACGCTGCTCCCTCTCGTATACCTCCACTCATGGTGTGTTCCGCGTCCCCGGGAAGGGCAAGACAGCGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACACATACCAGGGGAGGAGTGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAGCTGCATAATAAGCTCTGCACCCCGTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACGGTATAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5395#0 CCGGAGAGAAGCAGAGCTACTACGTAACGGACACCCACGATCGATTTATGTTTTCGCTTG 60 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 TGTTTTCGTTCGCTTGTCCACGATAACCACGATTCAATGTTGACGCATACACTTGGAGAG 120 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 ATAGTGACCGTGCAATAGTAGTAACGCCGCGCGCAGTAATGAGGTTTTGCGAGCGATCGT 180 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 GCGATTTGGAATGAAGATCGCTGAACCATCTCCCGAAGAAGAAGCACGCAAGCGAGCGAG 240 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 CGTTAGCAGAAAGAGCAAGAGATTGATGAAATTATGTTTTTATTGTTGCAAATATACATA 300 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 TAATGCACTAACTAAGCAAGTTGTACATTGTAGAAAGTTGTATTTAAACGAAAAAAAAAA 360 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 AACAATGCGAAACAAACCTAAGGCGCGCAGGCAGAGATACAATTTTGGGGGAGACACTTA 420 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 TCGATCGATCTAAAACATTATAGTAGGAAGACAAAATGGAACCATAAAACAAACTTCATT 480 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 CTCATTCGATGCTTCGATGCAGTTTCATGCACTTCTTACAACATAGAAAACAGCAAAAAA 540 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 ACAATTTTGATTCATCACACAAAACACGCAAAGTGTAGTATGAGATGACCTGCGCACGCC 600 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 AAACTTCATTCATAACTTTTTTCTTTTCCCCCCTCCTTCATAGTAGAGTGAAGATCGCTA 660 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 GTCTACGAACAAGATATAATATATATTTAGCTTAATATGTAATAGCAGGCATATATACAT 720 consensus_5395#1 ------------------------------------------------------------ consensus_5395#0 ACATATACTGGCTGGGAGGACATTCCAAACAAATTGAGAGCGTAAACAAGAAAAAAAAGG 780 consensus_5395#1 --------------------------------------------CCCCGAGGTTAAAAGG 16 * ****** consensus_5395#0 AACAAGGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAA 840 consensus_5395#1 AACA--GTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAA 74 **** ****************************************************** consensus_5395#0 ACCCATAAGCAATCGACCATTAGGCGCAACACAAACATCGCCGGCATAGCGTACAGGAAA 900 consensus_5395#1 -CCCATAAGCAATCGACCATTAGGCGCAACACAAACATTGCCGACAAAGCGT-TGAAGAA 132 ************************************* **** ** ***** ** consensus_5395#0 AAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGGAAAGGC 960 consensus_5395#1 AAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGAAAAGGC 192 ***************************************************** ****** consensus_5395#0 GACCCAAATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGG 1020 consensus_5395#1 GACCCACATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGG 252 ****** ***************************************************** consensus_5395#0 AGGATCAAACGCTGCTCCCTCTCGTATACCTCCATTGATGGTGTGTTCCGCGGCCCCGGG 1080 consensus_5395#1 AGGATCGCACGCTGCTCCCTCTCGTATACCTCCACTCATGGTGTGTTCCGCGTCCCCGGG 312 ****** ************************** * *************** ******* consensus_5395#0 ----GCAAGACAGCCTGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACATATAC 1136 consensus_5395#1 AAGGGCAAGACAGC--GCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACACATAC 370 ********** *************************************** **** consensus_5395#0 CAGGGG-GAAGCGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAG 1195 consensus_5395#1 CAGGGGAGGAGTGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAG 430 ****** * ** ************************************************ consensus_5395#0 CTGCATAATAAGCTCTGCACCCCTTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACG 1255 consensus_5395#1 CTGCATAATAAGCTCTGCACCCCGTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACG 490 *********************** ************************************ consensus_5395#0 GTATAATATAATCTAAAAAACACACAAATATTAAACCAGATATTCCCCCCGCCCCAACCC 1315 consensus_5395#1 GTATAATA---------------------------------------------------- 498 ******** consensus_5395#0 AA 1317 consensus_5395#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||