|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence
[GGCACANGCCACGCNAAGAGGAGACGNGGGNGGATNGNACNAANAGGGGGGNCCACGCGAGANGCATACGCGCAGAGGAGAGAGAGAGAGCCGCACNGCACGGCGTCTCACCGCATGTANNATNCGANGGNAGATNGAGNAAGTCGAACAANCTGATAGATTANGCGCTATACTGCGCCGTGGNCACAACGCGGTTGNCATATGGCAGTATAATAAGAGTTAATAGGTATATAGCGTATACACATAGGAAGAGACTGNTAGCTACGTTATNTGCTNATACCCCAAGGGCCTACTTTAAGACCGAGTCTATGGTGTGACTTTACAGCAGGTCACTGTTAGACACAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGGTANAGAGAACGACGTTCTATACACACTATATCCTACTGCGTACGATCGATNNAGNGACATNNACCAAGTGTAGCGTATNGTTTATACTCGTGCACTGATTTCCTGGTGAGGAACGGTANTTAAATCACAATCAGCTAGAGATCGGGAACGGTCCNCGGGACTTGNTGGGANCTCTAGCGTTGTGTTACGANCTTCGGCGTTAGGGGGCACAGATATTGGTCCGGATTCACACNNTGAGTTAGGCCATGNGCTCTACANCGATTNCACAAATGGCCAAAGAGGCCCTCTCAGGCCTCGGACACNTGGTGTGCCCGTCCTCTNACCAGCCCACTTNATACCCNTATCTAAACGTACCTCCCTCCANGGGTTATTGGCGTAANGTAACCNGAACTGTATCACGATCCAGCGGGCTATATACTGATACGNAGTGGACAGGTAGCAAGTTGGGNA]
[+] EMBL AL932866 [GGCACANGCCACGCNAAGAGGAGACGNGGGNGGATNGNACNAANAGGGGGGNCCACGCGAGANGCATACGCGCAGAGGAGAGAGAGAGAGCCGCACNGCACGGCGTCTCACCGCATGTANNATNCGANGGNAGATNGAGNAAGTCGAACAANCTGATAGATTANGCGCTATACTGCGCCGTGGNCACAACGCGGTTGNCATATGGCAGTATAATAAGAGTTAATAGGTATATAGCGTATACACATAGGAAGAGACTGNTAGCTACGTTATNTGCTNATACCCCAAGGGCCTACTTTAAGACCGAGTCTATGGTGTGACTTTACAGCAGGTCACTGTTAGACACAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGGTANAGAGAACGACGTTCTATACACACTATATCCTACTGCGTACGATCGATNNAGNGACATNNACCAAGTGTAGCGTATNGTTTATACTCGTGCACTGATTTCCTGGTGAGGAACGGTANTTAAATCACAATCAGCTAGAGATCGGGAACGGTCCNCGGGACTTGNTGGGANCTCTAGCGTTGTGTTACGANCTTCGGCGTTAGGGGGCACAGATATTGGTCCGGATTCACACNNTGAGTTAGGCCATGNGCTCTACANCGATTNCACAAATGGCCAAAGAGGCCCTCTCAGGCCTCGGACACNTGGTGTGCCCGTCCTCTNACCAGCCCACTTNATACCCNTATCTAAACGTACCTCCCTCCANGGGTTATTGGCGTAANGTAACCNGAACTGTATCACGATCCAGCGGGCTATATACTGATACGNAGTGGACAGGTAGCAAGTTGGGNA]
consensusID : consensus_5401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[CCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGATCAGAGCGCATGGATGTTGGTGGCTTCAATGGATAGTTAGTCGCAAAGCGCGGGCCCATTTTATGCACATTAAGGCGACAATAGAGAGAGAGCCGCAGGAAGGAGTTTACGATTTACATTCGAAGTAGATTTAGCAATCAAAAACTGATAGATTAAGCGCTATCGCCCTGCAACAACGCGTTGCCATATGGAGTTAATAAGAGTTATAGTTATAGCGTATACACATAGGAAGAGACTTTTAGCTACTTTTTGCTATCCCCAAGCCCTACTTTTAGACCGATCTATGTGTGACTTTCACAGTCATGTTAGCAAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGTTAGAGAACGACTTTCTTCACACTATTCCTACTGCTAGATCGATAAGAGACATAACAATGTAGCGTTTTTTTATATCGTGCATGATTTCATGGTGAGGAACGGTATTAAATCACAATCAGCTAGAGATCGGCGAACGTCCACGGGACTTGTTGCGATACTCTAGCGTTGTGTTAGACTCGCTTAGGGCATAGTAA]
[+] EMBL BX614869 [CCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGATCAGAGCGCATGGATGTTGGTGGCTTCAATGGATAGTTAGTCGCAAAGCGCGGGCCCATTTTATGCACATTAAGGCGACAATAGAGAGAGAGCCGCAGGAAGGAGTTTACGATTTACATTCGAAGTAGATTTAGCAATCAAAAACTGATAGATTAAGCGCTATCGCCCTGCAACAACGCGTTGCCATATGGAGTTAATAAGAGTTATAGTTATAGCGTATACACATAGGAAGAGACTTTTAGCTACTTTTTGCTATCCCCAAGCCCTACTTTTAGACCGATCTATGTGTGACTTTCACAGTCATGTTAGCAAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGTTAGAGAACGACTTTCTTCACACTATTCCTACTGCTAGATCGATAAGAGACATAACAATGTAGCGTTTTTTTATATCGTGCATGATTTCATGGTGAGGAACGGTATTAAATCACAATCAGCTAGAGATCGGCGAACGTCCACGGGACTTGTTGCGATACTCTAGCGTTGTGTTAGACTCGCTTAGGGCATAGTAA]
consensusID : consensus_5401#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[CCGCTCGGAGCTCGAACCAGGAGGGGACAAAAAAACCGCCCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGACCAGAGCGCATGGATGTTGGTGGCTTCAATGGATAGTTAGTCGCAAAGCGCGGGCCCATTTTATGCACATTAAGGCGACAATAGAGCGGAAAAAAGAAGAGAGTGAGGGAGGGAGAGTGAGAAAAATACGATAAGGTTCATAAAAAAATCAAAACGCAACGGATTCTGCTGGTGCTCAGTTACAGTGAAGCCACCAGGGCAAAGGGACGAACCCTCATTCCGTGCCGGACGTTGTGCAACGATAGAATCCGCTTTTTGTGCATCGTCCCATAATAATACTGGTCCAGTGGCAAGTGATTTGAATAGTGAAAAGTGAAAATTTAAAAGTAACCGACACTGTGTGCTCGTTTGAACGATTAGCGTGAGGAGAAGGGGCAGCCCGTGTCGCACCAGTTAGGTGACGAGTTGGGTTAATCAAGCGATCCATCACGATCCACCCGCGCTACTCTATTTCGCAGCGAACAGAGCACAGGTTCCACAGATGGCCGCCAGCCCC]
[+] EMBL BM593560 [CCGCTCGGAGCTCGAACCAGGAGGGGACAAAAAAACCGCCCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGACCAGAGCGCATGGATGTTGGTGGCTTCAATGGATAGTTAGTCGCAAAGCGCGGGCCCATTTTATGCACATTAAGGCGACAATAGAGCGGAAAAAAGAAGAGAGTGAGGGAGGGAGAGTGAGAAAAATACGATAAGGTTCATAAAAAAATCAAAACGCAACGGATTCTGCTGGTGCTCAGTTACAGTGAAGCCACCAGGGCAAAGGGACGAACCCTCATTCCGTGCCGGACGTTGTGCAACGATAGAATCCGCTTTTTGTGCATCGTCCCATAATAATACTGGTCCAGTGGCAAGTGATTTGAATAGTGAAAAGTGAAAATTTAAAAGTAACCGACACTGTGTGCTCGTTTGAACGATTAGCGTGAGGAGAAGGGGCAGCCCGTGTCGCACCAGTTAGGTGACGAGTTGGGTTAATCAAGCGATCCATCACGATCCACCCGCGCTACTCTATTTCGCAGCGAACAGAGCACAGGTTCCACAGATGGCCGCCAGCCCC]
consensusID : consensus_5401#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[CTCACGATGAGCATCATCTTCATGATCGGTATCTGTTCGGCTGTTTTCCTGCTTGAAATGCGTGCCAGGGAAATGCCAAAATAACGACTTTCGTTTCATCATCATTCGTTCGCACCACCAGAAGATACGAGAGAGAGAGAGAGAGAGCCGCAGGAAGGAGTTTACGATTTACATTCGAAGTAGATTTAGCAATCAAAAACTGATAGATTAAGCGCTATCGCCCTGCAACAACGCGTTGCCATATGGAGTTAATAAGAGTTATAGTTATAGCGTATACACATAGGAAGAGACTTTTAGCTACTTTTTGCTATCCCCAAGCCCTACTTTTAGACCGATCTATGTGTGACTTTCACAGTCATGTTAGCAAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGTTAGAGAACGACTTTCTTCACACTATTCCTACTGCTAGATCGATAAGAGACATAACAATGTAGCGTTTTTTTATATCGTGCATGATTTCATGGTGAGGAACGGTATTAAATCACAATCAGCTAGAGATCGGCGAACGTCCACGGGACTTGTTGCGATACTCTAGCGTTGTGTTAGACTCGCTTAGGGCATAGTAATTGTAACGATAAAAATGAGTTAGCA]
[+] EMBL BX621474 [CTCACGATGAGCATCATCTTCATGATCGGTATCTGTTCGGCTGTTTTCCTGCTTGAAATGCGTGCCAGGGAAATGCCAAAATAACGACTTTCGTTTCATCATCATTCGTTCGCACCACCAGAAGATACGAGAGAGAGAGAGAGAGAGCCGCAGGAAGGAGTTTACGATTTACATTCGAAGTAGATTTAGCAATCAAAAACTGATAGATTAAGCGCTATCGCCCTGCAACAACGCGTTGCCATATGGAGTTAATAAGAGTTATAGTTATAGCGTATACACATAGGAAGAGACTTTTAGCTACTTTTTGCTATCCCCAAGCCCTACTTTTAGACCGATCTATGTGTGACTTTCACAGTCATGTTAGCAAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGTTAGAGAACGACTTTCTTCACACTATTCCTACTGCTAGATCGATAAGAGACATAACAATGTAGCGTTTTTTTATATCGTGCATGATTTCATGGTGAGGAACGGTATTAAATCACAATCAGCTAGAGATCGGCGAACGTCCACGGGACTTGTTGCGATACTCTAGCGTTGTGTTAGACTCGCTTAGGGCATAGTAATTGTAACGATAAAAATGAGTTAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5401#0 ------------------------------------------------------------
consensus_5401#3 ------------------------------------------------------------
consensus_5401#1 CCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTT 60
consensus_5401#2 ------------------------------------------------------------
consensus_5401#0 ------------------------------------------------------------
consensus_5401#3 ------------------------------------------------CTCACGATGAGC 12
consensus_5401#1 TTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCA 120
consensus_5401#2 -------------------------------------------------CCGCTCGGAGC 11
consensus_5401#0 --------------------------------------------GGCACANGCCACGCNA 16
consensus_5401#3 ATCATCTTCATGATCGGTATCTGTTCGGCTGTTTTCCTGCTTGAAATGCGTGCCAGGGAA 72
consensus_5401#1 ATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGATCAGAGCGCATGG-ATGTTG 179
consensus_5401#2 TCGAACCAGGAGGGGACAAAAAAACCGCCCGCACCATCGGACCCTTTGTGTGT-GTGTGT 70
* *
consensus_5401#0 AGAGGAGACGNGGGNGGATNGNACNAANAGGGGG-GNCCACGCGAGANGCATACGC-GCA 74
consensus_5401#3 ATGCCAAAATAACGACTTTCGTTTCATCATCATTCGTTCGCACCACCAGAAGATAC-GAG 131
consensus_5401#1 GTGGCTTCAATGGATAGTTAGTCGCAA-AGCGCGGGCCCATTTTATGCACAT-TAA-GGC 236
consensus_5401#2 GTGTGAG-TGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCA 129
* * * * * * *
consensus_5401#0 GAGGAGAGAGAGAGAGCCGCACNGCACGGCGTCTC-ACCGCATGTANNATNCGANGGNAG 133
consensus_5401#3 AGAGAGAGAGAGAGAGCCGCAGG--AAGGAGTTT-----ACGATTTACATTCGAAG-TAG 183
consensus_5401#1 GACAATAGAGAGAGAGCCGCAGG--AAGGAGTTT-----ACGATTTACATTCGAAG-TAG 288
consensus_5401#2 AGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAA 189
* * * ** * * * * * * * *
consensus_5401#0 ATNGAGNAAGTCGAACAANCTGATAGAT-TANGCGCTATACTGCGCCGTGGNCACAACGC 192
consensus_5401#3 ATTTAGCAA-TCAA--AAACTGATAGAT-TAAGCGCTAT----CGCCCTG-CAACAACGC 234
consensus_5401#1 ATTTAGCAA-TCAA--AAACTGATAGAT-TAAGCGCTAT----CGCCCTG-CAACAACGC 339
consensus_5401#2 CGTGTGCAGACCAG---AGCGCATGGATGTTGGTGGCTT----CAATGGA-TAGTTAGTC 241
* * * * * ** *** * * * * * * *
consensus_5401#0 GGTTGNCATATGGCAGTATAATAAGAGTTAATAGGTATATAGCGTATACACATAGGAAGA 252
consensus_5401#3 G-TTGCCATATGG-AGT-TAATAAGAGTTA-TAGTTAT--AGCGTATACACATAGGAAGA 288
consensus_5401#1 G-TTGCCATATGG-AGT-TAATAAGAGTTA-TAGTTAT--AGCGTATACACATAGGAAGA 393
consensus_5401#2 GCAAAGCGCGGGCCCATTTTATGCACATTA--AGGCGACAATAGAGCGGAAAAAAGAAGA 299
* * * * * ** *** ** * * * * * *****
consensus_5401#0 GACTGNTAGCTACGTTATNTGCTNATACCCCAAGGGCCTACTTTAAGACCGAG--TCTAT 310
consensus_5401#3 GACTTTTAGCTACTTT-----TTGCTATCCCCAAGCCCTACTTTTAGACCGA---TCTAT 340
consensus_5401#1 GACTTTTAGCTACTTT-----TTGCTATCCCCAAGCCCTACTTTTAGACCGA---TCTAT 445
consensus_5401#2 GAGTGAGGGAGGGAGAGTGAGAAAAATACGATAAGGTTCATAAAAAAATCAAAACGCAAC 359
** * * * * * * * * * * * *
consensus_5401#0 GGTGTGACTTTACAGCAGGTCACTGTTAGA-CAC-AGAGTATAGAAGCATATCTTAACAT 368
consensus_5401#3 G-TGTGACTTT-CAC--AGTCA-TGTTAG--CA--AGAGTATAGAAGCATATCTTAACAT 391
consensus_5401#1 G-TGTGACTTT-CAC--AGTCA-TGTTAG--CA--AGAGTATAGAAGCATATCTTAACAT 496
consensus_5401#2 GGATTCTGCTGGTGCTCAGTTACAGTGAAGCCACCAGGGCAAAGGGACGAACCCTCAT-T 418
* * * ** * ** * ** ** * * ** * * * * * *
consensus_5401#0 ACTTTTCACACAGCTGGTANAGAGA-ACGACGTTCTATACACACTATATCCTACTGCGTA 427
consensus_5401#3 ACTTTTCACACAGCTGTTAGAGA---ACGACTTTCTT--CACACTAT-TCCTACTGC-TA 444
consensus_5401#1 ACTTTTCACACAGCTGTTAGAGA---ACGACTTTCTT--CACACTAT-TCCTACTGC-TA 549
consensus_5401#2 CCGTGCCGGACGTTGTGCAACGATAGAATCCGCTTTTTGTGCATCGTCCCATAATAA-TA 477
* * * ** * ** * * * * ** * * ** * **
consensus_5401#0 C--GATCGATNNAGNGACATNNACCAAGTGTAGCGTA-TNGTTTA----TACTCG-TGCA 479
consensus_5401#3 ---GATCGATAA-GAGACATAAC---AATGTAGCGT--TTTTTTA----TA-TCG-TGCA 489
consensus_5401#1 ---GATCGATAA-GAGACATAAC---AATGTAGCGT--TTTTTTA----TA-TCG-TGCA 594
consensus_5401#2 CTGGTCCAGTGGCAAGTGATTTGAATAGTGAAAAGTGAAAATTTAAAAGTAACCGACACT 537
* * * * ** * ** * ** **** ** ** *
consensus_5401#0 CTGATTTCCTGGTGAGGAACGGTANTTAAATCACAATCAGCTAGAGATCGGGAACGGTCC 539
consensus_5401#3 -TGATTTCATGGTGAGGAACGGTATT-AAATCACAATCAGCTAGAGATCGGCGAACGTCC 547
consensus_5401#1 -TGATTTCATGGTGAGGAACGGTATT-AAATCACAATCAGCTAGAGATCGGCGAACGTCC 652
consensus_5401#2 GTGTGCTCGTTTGAACGATTAGCGTGAGGAGAAGGGGCAGCCCGTG-TCG--CACCAGTT 594
** ** * * ** * * * **** * * *** *
consensus_5401#0 NCGGGACTTGNTGGGAN-CTCTAGCGTTGTGTTACGANCTTCGGCGTTAGGGGGCACAGA 598
consensus_5401#3 ACGGGACTTGTTGCGATACTCTAGCGTTGTGTTA-GACTCGC----TTAGGG--CATAGT 600
consensus_5401#1 ACGGGACTTGTTGCGATACTCTAGCGTTGTGTTA-GACTCGC----TTAGGG--CATAGT 705
consensus_5401#2 AGGTGACGAGTTGGGTTAATCAAGCGATCCATCACGATCCAC----CCGCGC--TACTCT 648
* *** * ** * ** **** * * * ** * * *
consensus_5401#0 TATTGGTCCGGATTCACACNNTGAGTTAGGCCATGNGCTCTACANCGATTNCACAAATGG 658
consensus_5401#3 AATTGTAACGATA----AAAATGAGTTAGCA----------------------------- 627
consensus_5401#1 AA---------------------------------------------------------- 707
consensus_5401#2 ATTTCGCAGCGAACAGAGCACAGGTTCCACAGATGGCCGCCAGCCCC------------- 695
consensus_5401#0 CCAAAGAGGCCCTCTCAGGCCTCGGACACNTGGTGTGCCCGTCCTCTNACCAGCCCACTT 718
consensus_5401#3 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#2 ------------------------------------------------------------
consensus_5401#0 NATACCCNTATCTAAACGTACCTCCCTCCANGGGTTATTGGCGTAANGTAACCNGAACTG 778
consensus_5401#3 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#2 ------------------------------------------------------------
consensus_5401#0 TATCACGATCCAGCGGGCTATATACTGATACGNAGTGGACAGGTAGCAAGTTGGGNA 835
consensus_5401#3 ---------------------------------------------------------
consensus_5401#1 ---------------------------------------------------------
consensus_5401#2 ---------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||