cluster # 5403

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5403 cluster # 5403 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5403#0 length = 714 sequences # 3

consensus_5403#1 length = 531 sequences # 1

consensusID : consensus_5403#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 714
fasta sequence

                              [CCGCATTTTTAGACGAAAGTACAAACCTTAAATCACTTAAATTTCCAAATTATTTTCCAGCCATGGCGTCTGCAGTGGCCGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCGGAAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGGGCTGCACGGTAGCTTGGCGCTGCACGAGGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCCGCACACTGTTAATTTGAAGCCAAACATGTAAATATAGACGCTTCTGGTAGTCAAATAATAATGAGAATACATTTATATTGTGCGAT---ATGATCCTTTAAATAATCAGTAAACAAAATTA]

[+] EMBL BM625380             [CCGCATTTTTAGACGAAAGTACAAACCTTAAATCACTTAAATTTCCAAATTATTTTCCAGCCATGGCGTCTGCAGTGGCCGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCGGAAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGGGCTGCACGGTAGCTTAGCGCTGCACGAGGCCGGCACCAGCCTGGCGCTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCCGCACACTGTTAATTTGAAGCCAAACATGTAAATATACACGCTT                                                                              ]
[+] EMBL BM591134             [                                           ccgAAATTAAATAACA CCATGGCGTCTGCAGTGGCCGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCGGAAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGGGCTGCACGGTAGCTTGGCGCTGCACGAGGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCGATCTGATGCAGTACCTGTCAACGCGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCTGCACACTGTTAATTTGAAGCCCAACATGTAAATATAGACGCTTCTGGTAGTCAAATAATAATGAGAATACATTTATATTGTGCGAT   ATGATCCTTT                      ]
[+] EMBL BX622350             [                                                                                        CCGGACAGTTCCCACCCTGGAAGAGCAAGCGGAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGGGCTGCACGGTAGCTTGGCGCTGCACGAGGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGTAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCGGCACACTGTTAATTTGAAGCCAAACATGTAAATATAGACGCTTCTGGTAGTCAAATAATAATAAGAATACATTTATTTTGTGCGATATGATGATCCTTTAAATAATCAGTAAACAAAATTA]




>consensus_5403#0
CCGCATTTTTAGACGAAAGTACAAACCTTAAATCACTTAAATTTCCAAATTATTTTCCAG
CCATGGCGTCTGCAGTGGCCGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCGG
AAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGT
CAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACT
TCGACAAAGGGCTGCACGGTAGCTTGGCGCTGCACGAGGCCGGCACCAGCCTGGCACTGC
GAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAA
TATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTGCTT
TCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCG
ATCTGATGCAGTACCTGTCAACGTGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGA
CCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCCGCAC
ACTGTTAATTTGAAGCCAAACATGTAAATATAGACGCTTCTGGTAGTCAAATAATAATGA
GAATACATTTATATTGTGCGATATGATCCTTTAAATAATCAGTAAACAAAATTA

consensusID : consensus_5403#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [AATCGCCGAGGNTNACACATGGCATCTACAGTGGAACAACCTGGGCCGGACAGTTCCCACCCTGGAAGAGCAAGCGGAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTACAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGTGGCTGCACGGTAGCTTGGCGCTGCACGAGTGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGTAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACAGTCTGGACCGAGTTCGAAGGATTTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGCACGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCTANTCAGTAAGCCGGTCTTAC]

[+] EMBL AL932879             [AATCGCCGAGGNTNACACATGGCATCTACAGTGGAACAACCTGGGCCGGACAGTTCCCACCCTGGAAGAGCAAGCGGAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTACAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGTGGCTGCACGGTAGCTTGGCGCTGCACGAGTGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGTAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACAGTCTGGACCGAGTTCGAAGGATTTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGCACGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCTANTCAGTAAGCCGGTCTTAC]




>consensus_5403#1
AATCGCCGAGGNTNACACATGGCATCTACAGTGGAACAACCTGGGCCGGACAGTTCCCAC
CCTGGAAGAGCAAGCGGAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTACA
GCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAA
TCTGACCCAAAGTACTTCGACAAAGTGGCTGCACGGTAGCTTGGCGCTGCACGAGTGCCG
GCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCG
GTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGC
AAGCGGTTGGTAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACAGTCTGGACCG
AGTTCGAAGGATTTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGCACGGAGA
AAGCCGTTACTTCCCTAGCGACCACACAGCTANTCAGTAAGCCGGTCTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5403#0      CCGCATTTTTAGACGAAAGTACAAACCTTAAATCACTTAAATTTCCAAATTATTTTCCAG 60
consensus_5403#1      ---------------------------------------AATCGCCGAGG-----NTNAC 16
                                                             ***  ** *          * 

consensus_5403#0      CCATGGCGTCTGCAGTGGC-CGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCG 119
consensus_5403#1      ACATGGCATCTACAGTGGAACAACCTGGGCCGGACAGTTCCCACCCTGGAAGAGCAAGCG 76
                       ****** *** ******  * * * ****** * ****** **    ************

consensus_5403#0      GAAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACG 179
consensus_5403#1      GAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTA-CAGCGGTCGGTGCAACG 135
                      *** ******* ****************************** *****************

consensus_5403#0      TCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTAC 239
consensus_5403#1      TCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTAC 195
                      ************************************************************

consensus_5403#0      TTCGACAAAG-GGCTGCACGGTAGCTTGGCGCTGCACGAG-GCCGGCACCAGCCTGGCAC 297
consensus_5403#1      TTCGACAAAGTGGCTGCACGGTAGCTTGGCGCTGCACGAGTGCCGGCACCAGCCTGGCAC 255
                      ********** ***************************** *******************

consensus_5403#0      TGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCG 357
consensus_5403#1      TGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCG 315
                      ************************************************************

consensus_5403#0      GAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTG 417
consensus_5403#1      GAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGTAGTG 375
                      ******************************************************* ****

consensus_5403#0      CTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATT-G 476
consensus_5403#1      CTTTCCCTCGCGTCCCACGGAACGATCCACCGACAGTCTGGACCGAGTTCGAAGGATTTG 435
                      **********************************     ******************* *

consensus_5403#0      ACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGA--GGAGAAAGCCGTTACTTCCC 534
consensus_5403#1      ACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGCACGGAGAAAGCCGTTACTTCCC 495
                      *************************************   ********************

consensus_5403#0      TAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAG 594
consensus_5403#1      TAGCGACCACACAGC-TANTCAGTAAGCCGGTCTTAC----------------------- 531
                      *************** ** *****************                        

consensus_5403#0      CCGCACACTGTTAATTTGAAGCCAAACATGTAAATATAGACGCTTCTGGTAGTCAAATAA 654
consensus_5403#1      ------------------------------------------------------------
                                                                                  

consensus_5403#0      TAATGAGAATACATTTATATTGTGCGATATGATCCTTTAAATAATCAGTAAACAAAATTA 714
consensus_5403#1      ------------------------------------------------------------