cluster # 5408

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Anopheles gambiae
cluster # 5408 cluster # 5408 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5408#0 length = 1181 sequences # 2

consensus_5408#1 length = 613 sequences # 1
consensus_5408#2 length = 189 sequences # 1

consensusID : consensus_5408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1181
fasta sequence

                              [GCGATCAGACCCTCAAACGCTTGTAGGAGCGTGTACTGAAGTGCGTGTGTTTGTGCAGTGTGTGTGTGAAAAAAGCTCTCACTTTCGTGTGTGCAACCAACCTAAGAACTGCCTGTCGGAAAGGAAGCACCGCTCACGGGACACCATGACGTCCGGGAGACGCAGCTGGATGGTGCTGGCAGGGGTGCTGCTAGTGCTAGCGGTGATTGCCGCCCCGGTTGGTAGCTATTCGCCGTTCAAGAAGGGACCGCAGCACGGTTCGTTTACTCGCACTGGCTCACCGGCAGCAGCTAATGGCGGAACTGTGCGCGAGCGGGAGCGGGAGCGCGAACGGGAACGCGAACAGGAACGGCTGGCGACACCGTACGTGGGCCCGCTGGTTGGGCTGGAGGCGGGCGGTAAGCGGGCTGCCAACGACTTCCTGGAGGACGTCGGCAAGAATGTGTTTGACACCGTTTACCACTGGAAGGTGATGGACTTCATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGTGCTGGATGCGGGCGTTACCGACACGCTGACCAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTGCGCGACGGCCAGTGCGAGGATGCGTTCGCGTACGTAGCGGACGTGTGGCGCAACGGCATCACCGTGTTCGACATGCGCAAGTTCAAGAGCTGGCGCACGACGAACCATCTGTACAACCCGAACCCGCTGGCCAGCGACTACAACTACCAGGATCTGAACTTCCAGTGGTCGGACGGTGTGTTCGGCATGTCGCTCGCGCCCGTCCACCGCTCCGGCGATCGGATGCTGCTCTTCCACCCGA]

[+] EMBL BX623390             [GCGATCAGACCCTCAAACGCTTGTAGGAGCGTGTACTGAAGTGCGTGTGTTTGTGCAGTGTGTGTGTGAAAAAAGCTCTCACTTTCGTGTGTGCAACCAACCTAAGAACTGCCTGTCGGAAAGGAAGCACCGCTCACGGGACACCATGACGTCCGGGAGACGCAGCTGGATGGTGCTGGCAGGGGTGCTGCTAGTGCTAGCGGTGATTGCCGCCCCGGTTGGTAGCTATTCGCCGTTCAAGAAGGGACCGCAGCACGGTTCGTTTACTCGCACTGGCTCACCGGCAGCAGCTAATGGCGGAACTGTGCGCGAGCGGGAGCGGGAGCGCGAACGGGAACGCGAACAGGAACGGCTGGCGACACCGTACGTGGGCCCGCTGGTTGGGCTGGAGGCGGGCGGTAAGCGGGCTGCCAACGACTTCCTGGAGGACGTCGGCAAGAATGTGTTTGACACCGTTTACCACTGGAAGGTGATGGACTTCATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGTGCTGGATGCGGGCGTTACCGACACGCTGACCA                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX623852             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGTGCTGGATGCGGGCGTTACCGACACGCTGACCAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTGCGCGACGGCCAGTGCGAGGATGCGTTCGCGTACGTAGCGGACGTGTGGCGCAACGGCATCACCGTGTTCGACATGCGCAAGTTCAAGAGCTGGCGCACGACGAACCATCTGTACAACCCGAACCCGCTGGCCAGCGACTACAACTACCAGGATCTGAACTTCCAGTGGTCGGACGGTGTGTTCGGCATGTCGCTCGCGCCCGTCCACCGCTCCGGCGATCGGATGCTGCTCTTCCACCCGA]




>consensus_5408#0
GCGATCAGACCCTCAAACGCTTGTAGGAGCGTGTACTGAAGTGCGTGTGTTTGTGCAGTG
TGTGTGTGAAAAAAGCTCTCACTTTCGTGTGTGCAACCAACCTAAGAACTGCCTGTCGGA
AAGGAAGCACCGCTCACGGGACACCATGACGTCCGGGAGACGCAGCTGGATGGTGCTGGC
AGGGGTGCTGCTAGTGCTAGCGGTGATTGCCGCCCCGGTTGGTAGCTATTCGCCGTTCAA
GAAGGGACCGCAGCACGGTTCGTTTACTCGCACTGGCTCACCGGCAGCAGCTAATGGCGG
AACTGTGCGCGAGCGGGAGCGGGAGCGCGAACGGGAACGCGAACAGGAACGGCTGGCGAC
ACCGTACGTGGGCCCGCTGGTTGGGCTGGAGGCGGGCGGTAAGCGGGCTGCCAACGACTT
CCTGGAGGACGTCGGCAAGAATGTGTTTGACACCGTTTACCACTGGAAGGTGATGGACTT
CATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGA
AAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCG
CTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAG
CCAGCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTG
CTCCAAGATGATGTCCGTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGTGCT
GGATGCGGGCGTTACCGACACGCTGACCAACCTGCAGCAGGTCTGCCCGCCGAAGATTAT
GGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGT
GAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTGCGCGACGGCCAGTGCGAGGA
TGCGTTCGCGTACGTAGCGGACGTGTGGCGCAACGGCATCACCGTGTTCGACATGCGCAA
GTTCAAGAGCTGGCGCACGACGAACCATCTGTACAACCCGAACCCGCTGGCCAGCGACTA
CAACTACCAGGATCTGAACTTCCAGTGGTCGGACGGTGTGTTCGGCATGTCGCTCGCGCC
CGTCCACCGCTCCGGCGATCGGATGCTGCTCTTCCACCCGA

consensusID : consensus_5408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [ACGTCGGCCAGAATGTGTCTGACACCGTTTAACACTGGAAGGTGATGGACTTCATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGTCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGGGTTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGGGTGCTGGATGCGGGGCCCGGTTACCGAAANACCCCACAAAAAACCCCGGGCCTGAAACCCAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTTGCGCGACGGCCAGTGCGAGATGCGTTCGCGTACGTAGCGGACGTGTGGCNGCAACGGCATCACCGGTC]

[+] EMBL AL933629             [ACGTCGGCCAGAATGTGTCTGACACCGTTTAACACTGGAAGGTGATGGACTTCATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGTCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGGGTTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGGGTGCTGGATGCGGGGCCCGGTTACCGAAANACCCCACAAAAAACCCCGGGCCTGAAACCCAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTTGCGCGACGGCCAGTGCGAGATGCGTTCGCGTACGTAGCGGACGTGTGGCNGCAACGGCATCACCGGTC]




>consensus_5408#1
ACGTCGGCCAGAATGTGTCTGACACCGTTTAACACTGGAAGGTGATGGACTTCATGTACC
CCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATC
TGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACC
CGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGTCCG
CTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAG
ATGATGTCCGGGTTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGGGTGCTGG
ATGCGGGGCCCGGTTACCGAAANACCCCACAAAAAACCCCGGGCCTGAAACCCAACCTGC
AGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCA
CGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGG
ACGTTGCGCGACGGCCAGTGCGAGATGCGTTCGCGTACGTAGCGGACGTGTGGCNGCAAC
GGCATCACCGGTC

consensusID : consensus_5408#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [CTCAGCCAGAATTGCCCCCGAGGTTTAACGCGAAACAAGGGGAAAACTGTGGCTTTGNGACAACGTACGTTGGCCCGCTGGGGTTTGGGGGCCTTGGAGAGCGGGCGGTAAGCGGGCTGGCAACGAAACTTCCTGGAGGACGTCGGAAGAATGTGTTTGACACCGTTTACCACTGGAAGNGTTGATGGA]

[+] EMBL AL933129             [CTCAGCCAGAATTGCCCCCGAGGTTTAACGCGAAACAAGGGGAAAACTGTGGCTTTGNGACAACGTACGTTGGCCCGCTGGGGTTTGGGGGCCTTGGAGAGCGGGCGGTAAGCGGGCTGGCAACGAAACTTCCTGGAGGACGTCGGAAGAATGTGTTTGACACCGTTTACCACTGGAAGNGTTGATGGA]




>consensus_5408#2
CTCAGCCAGAATTGCCCCCGAGGTTTAACGCGAAACAAGGGGAAAACTGTGGCTTTGNGA
CAACGTACGTTGGCCCGCTGGGGTTTGGGGGCCTTGGAGAGCGGGCGGTAAGCGGGCTGG
CAACGAAACTTCCTGGAGGACGTCGGAAGAATGTGTTTGACACCGTTTACCACTGGAAGN
GTTGATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5408#0      GCGATCAGACCCTCAAACGCTTGTAGGAGCGTGTACTGAAGTGCGTGTGTTTGTGCAGTG 60
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      TGTGTGTGAAAAAAGCTCTCACTTTCGTGTGTGCAACCAACCTAAGAACTGCCTGTCGGA 120
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      AAGGAAGCACCGCTCACGGGACACCATGACGTCCGGGAGACGCAGCTGGATGGTGCTGGC 180
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      AGGGGTGCTGCTAGTGCTAGCGGTGATTGCCGCCCCGGTTGGTAGCTATTCGCCGTTCAA 240
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      GAAGGGACCGCAGCACGGTTCGTTTACTCGCACTGGCTCACCGGCAGCAGCTAATGGCGG 300
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      AACTGTGCGCGAGCGGGAGCGGGAGCGCGAACGGGAACGCGAACAGGAACGGCTGGCGAC 360
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      ACCGTACGTGGGCCCGCTGGTTGGGCTGGAGGCGGGCGGTAAGCGGGCTGCCAACGACTT 420
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      CCTGGAGGACGTCGGCAAGAATGTGTTTGACACCGTTTACCACTGGAAGGTGATGGACTT 480
consensus_5408#1      --------ACGTCGGCCAGAATGTGTCTGACACCGTTTAACACTGGAAGGTGATGGACTT 52
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      CATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGA 540
consensus_5408#1      CATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGA 112
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      AAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCG 600
consensus_5408#1      AAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCG 172
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      CTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAG 660
consensus_5408#1      CTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAG 232
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      CCAG-CCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACT 719
consensus_5408#1      CCAGTCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACT 292
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      GCTCCAAGATGATGTCCG---TGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGG 776
consensus_5408#1      GCTCCAAGATGATGTCCGGGTTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGG 352
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      --TGCTGGATGCGGGC----GTTACCGACACGC--------------------TGA---C 807
consensus_5408#1      GGTGCTGGATGCGGGGCCCGGTTACCGAAANACCCCACAAAAAACCCCGGGCCTGAAACC 412
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      CAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCT 867
consensus_5408#1      CAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCT 472
consensus_5408#2      ----CTCAGCCAGAATTGCCC-CCGAGGTTTAACGCGAAACAAGGGGAAAACTGTGGCTT 55
                          **    ***   ***** **** * ***  ***    *   * * ***   *   *

consensus_5408#0      GCTGTTCACGTACGT---CCTGCCCGAGGA-GCAGGTGAAGGAGGACTCGCTGCACACCA 923
consensus_5408#1      GCTGTTCACGTACGT---CCTGCCCGAGGA-GCAGGTGAAGGAGGACTCGCTGCACACCA 528
consensus_5408#2      TGNGACAACGTACGTTGGCCCGCTGGGGTTTGGGGGCCTTGGAGAGCGGGCGGTAAGCGG 115
                         *   ********   ** **  * *   *  **    ****  *  ** * *  *  

consensus_5408#0      ACATCGTGGTGGACGT-GCGCGACGGCCAGTGCGAGGATGCGTTCGCGTACGTAGCGGAC 982
consensus_5408#1      ACATCGTGGTGGACGTTGCGCGACGGCCAGTGCGAG-ATGCGTTCGCGTACGTAGCGGAC 587
consensus_5408#2      GC-TGGCAACGAAACT-TCCTGGAGGACGTCGGAAGAATGTGTTTGACACCGTTTACCAC 173
                       * * *    * *  *  *  *  ** *   *  ** *** *** *    ***     **

consensus_5408#0      GTGTGGCG-CAACGGCATCACCGTGTTCGACATGCGCAAGTTCAAGAGCTGGCGCACGAC 1041
consensus_5408#1      GTGTGGCNGCAACGGCATCACCG-GTC--------------------------------- 613
consensus_5408#2      TGGAAGNGTTGATGGA-------------------------------------------- 189
                        *  *     * **                                             

consensus_5408#0      GAACCATCTGTACAACCCGAACCCGCTGGCCAGCGACTACAACTACCAGGATCTGAACTT 1101
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      CCAGTGGTCGGACGGTGTGTTCGGCATGTCGCTCGCGCCCGTCCACCGCTCCGGCGATCG 1161
consensus_5408#1      ------------------------------------------------------------
consensus_5408#2      ------------------------------------------------------------
                                                                                  

consensus_5408#0      GATGCTGCTCTTCCACCCGA 1181
consensus_5408#1      --------------------
consensus_5408#2      --------------------