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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1423 fasta sequence
[TTTATAATCAACCTCGTAGTAACTGCTCGTGGCGTTAAACCGCATCCGTTGCGTGCTGGAAGAGTGTGTGAATTCGTCCACTTCCACTCTGCTGTTCCTCTGTTGAGTTATGGTTTTGCTTTACAGGCGAACGCACAATCGATGGGCGATCGGTACCATTCAGGTCAGGGAGAGGGGGGTACATCAAACCTGAATGTTTGACGATGCAAACACGTTGAACGTGATTTGCTTTATCTCGAGTATTTGTAGCAAAAGGGACAGTAATACTTCCTTCAAGTTGTATTAAAATCATATTGGTTTGCAAAGACGCAAAATTTGCACCTAACGTAACGGTCATGATTCAGGTCAGGAATCATTCCCAATCCCACCCAGTTTTTGGTGCGTTTTTTTCAACTGTGCCAACAGCGTGTTGTTGTTGTTGTGGCATTGAATTAAATTTAGTCCACTTGAGAGATATTGAATTGAGCTTCGATTCTTGATGCCAAACGAAGGAGAAGCGTGAAATACTTACTAGGAAAAGTACACGAACTGATGATACGCGGGCAATCGCTCCTCTCTACCGATTTTTGGTTAGTAAGCTATACTTCCATCTCTATCACCTTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCACGCACCCTGTATTGTGTGATGTTGGCACGTGTTACAGGGTT--TTTCAGGAGCTCCCATAACTTTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACCTATTGTAATGGGAATTGGACTCTATATCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCCGTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGGAAGTGTCCCACAACTATGAGAGCCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTGTTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAACCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGTATAAAAACACTTTACAACATAACAAAAACCGCCAAATCTACAATGTACAGAAGAGAACAAAAAACCCCAATCCCCCAAACATACGCACACACAAACGAGTACAATGCTGCGTTCGGTGTTGCACATGATTACATCTCAACTATATTATCCANAGACGCCCAGCTTAAAAAATCACAATACAGGAACCCACTCGCATAGCAAAAGTGCGCAAATGTTTAAATAATA]
[+] EMBL BX606344 [TTTATAATCAACCTCGTAGTAACTGCTCGTGGCGTTAAACCGCATCCGTTGCGTGCTGGAAGAGTGTGTGAATTCGTCCACTTCCACTCTGCTGTTCCTCTGTTGAGTTATGGTTTTGCTTTACAGGCGAACGCACAATCGATGGGCGATCGGTACCATTCAGGTCAGGGAGAGGGGGGTACATCAAACCTGAATGTTTGACGATGCAAACACGTTGAACGTGATTTGCTTTATCTCGAGTATTTGTAGCAAAAGGGACAGTAATACTTCCTTCAAGTTGTATTAAAATCATATTGGTTTGCAAAGACGCAAAATTTGCACCTAACGTAACGGTCATGATTCAGGTCAGGAATCATTCCCAATCCCACCCAGTTTTTGGTGCGTTTTTTTCAACTGTGCCAACAGCGTGTTGTTGTTGTTGTGGCATTGAATTAAATTTAGTCCACTTGAGAGATATTGAATTGAGCTTCGATTCTTGATGCCAAACGAAGGAGAAGCGTGAAATACTTACTAGGAAAAGTACACGAACTGATGATACGCGGGCAATCGCTCCTCTCTACCGATTTTTGGTTAGTAAGCTATACTTCCATCTCTATCACCTTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCACGCACCCTGTATTGTGTGATGTTGGCACGTGTTACAGGGTT TTTCAGGAGCTCCCATAACTTTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACCTATTGTAATGGGAATTGGACTCTATATCACTCCTGTTGG ]
[+] EMBL AL933518 [ gatcccgaGGTTAGTTTCAGGAGCTCCCATAGCTGTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACTTCTTGGAATGGGAATTGGACTCTATATCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCCGTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGGAAGTGTCCCACAACTATGAGAGCCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTGTTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAACCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGTATAAAAACACTTTACAACATAACAAAAACCGCCAAATCTACAATGTACAGAAGAGAACAAAAAACCCCAATCCCCCAAACATACGCACACACAAACGAGTACAATGCTGCGTTCGGTGTTGCACATGATTACATCTCAACTATATTATCCANAGACGCCCAGCTTAAAAAATCACAATACAGGAACCCACTCGCATAGCAAAAGTGCGCAAATGTTTAAATAATA]
consensusID : consensus_5422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1289 fasta sequence
[ATCGCCCCNAGGTGATTTTNGGTTACNAGCTATACTTCCATCTCTATCACCTTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCGCGCACCCTGTATTGTGTGATGTTGGCACATGTTACAGGGGTTTTCAGGAGACTCCCATAGCTGTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACTTCTTGCGAATGGGAATTGGACTCTATATCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCCGTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGAAGTGTCCCACAACTATGAGAACCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTGTTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAACCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGC-TTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGTATAAAAACACTTTACAACATAACAAAAACGCCAAATCTACAATGTACAGAAGAGAACAAAAAACCCAATCCCCCACACATACGCACACACAAAGAGTACAATGCTGCGTTCGGTGTTGCACATGATTTACATTTTTAGCTATATTAGTCCAAGCGCCAGCTTAGAAATCACAATACAGGAACACACTCGCATAGGCAAAAGTGCGCAAAATGTTATAAAATAAATAGGGCATGAAATCGCTTTCCTCGTCTCTTCGTTTGAATCGCTACACGGCATCCCGCACACCCAGAGAAAAGGGGTATGAAATGAAAATACAACCATTTGTATGTGTGTGTGTTTGGCCCGAGGGTGTGATATAAATAATAACTTCTATATAAATATATATATTTTTTAAACTGATCAATTTCAACACCACAATGATAAATGGTGTGTTACAAACCTCTTAACGATTAATTAAATGTGTAAAAGCAAGGATAAAATATACATGCATATATATATATACATACATATACGCGCAAACGATTTATACAAAAGAAAACAAAAATACCTACNAAAGAACGAGGGGGGAAGGCTTCATGAAAAAAAAACAGACCAAAACGTAATTTGTAAACTGAGAAATGCCATGGCAATAGAGAGAAAC]
[+] EMBL AL934865 [ATCGCCCCNAGGTGATTTTNGGTTACNAGCTATACTTCCATCTCTATCACCTTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCGCGCACCCTGTATTGTGTGATGTTGGCACATGTTACAGGGGTTTTCAGGAGACTCCCATAGCTGTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACTTCTTGCGAATGGGAATTGGACTCTATATCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCCGTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGAAGTGTCCCACAACTATGAGAACCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTGTTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAACCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGC TTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGA ]
[+] EMBL BX621322 [ gAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGTATAAAAACACTTTACAACATAACAAAAACGCCAAATCTACAATGTACAGAAGAGAACAAAAAACCCAATCCCCCACACATACGCACACACAAAGAGTACAATGCTGCGTTCGGTGTTGCACATGATTTACATTTTTAGCTATATTAGTCCAAGCGCCAGCTTAGAAATCACAATACAGGAACACACTCGCATAGGCAAAAGTGCGCAAAATGTTATAAAATAAATAGGGCATGAAATCGCTTTCCTCGTCTCTTCGTTTGAATCGCTACACGGCATCCCGCACACCCAGAGAAAAGGGGTATGAAATGAAAATACAACCATTTGTATGTGTGTGTGTTTGGCCCGAGGGTGTGATATAAATAATAACTTCTATATAAATATATATATTTTTTAAACTGATCAATTTCAACACCACAATGATAAATGGTGTGTTACAAACCTCTTAACGATTAATTAAATGTGTAAAAGCAAGGATAAAATATACATGCATATATATATATACATACATATACGCGCAAACGATTTATACAAAAGAAAACAAAAATACCTACNAAAGAACGAGGGGGGAAGGCTTCATGAAAAAAAAACAGACCAAAACGTAATTTGTAAACTGAGAAATGCCATGGCAATAGAGAGAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5422#0 TTTATAATCAACCTCGTAGTAACTGCTCGTGGCGTTAAACCGCATCCGTTGCGTGCTGGA 60
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 AGAGTGTGTGAATTCGTCCACTTCCACTCTGCTGTTCCTCTGTTGAGTTATGGTTTTGCT 120
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 TTACAGGCGAACGCACAATCGATGGGCGATCGGTACCATTCAGGTCAGGGAGAGGGGGGT 180
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 ACATCAAACCTGAATGTTTGACGATGCAAACACGTTGAACGTGATTTGCTTTATCTCGAG 240
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 TATTTGTAGCAAAAGGGACAGTAATACTTCCTTCAAGTTGTATTAAAATCATATTGGTTT 300
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 GCAAAGACGCAAAATTTGCACCTAACGTAACGGTCATGATTCAGGTCAGGAATCATTCCC 360
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 AATCCCACCCAGTTTTTGGTGCGTTTTTTTCAACTGTGCCAACAGCGTGTTGTTGTTGTT 420
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 GTGGCATTGAATTAAATTTAGTCCACTTGAGAGATATTGAATTGAGCTTCGATTCTTGAT 480
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 GCCAAACGAAGGAGAAGCGTGAAATACTTACTAGGAAAAGTACACGAACTGATGATACGC 540
consensus_5422#1 ------------------------------------------------------------
consensus_5422#0 GGGCAATCGCTCCTCTCTACCGATTTTTGGTTAGTAAGCTATACTTCCATCTCTATCACC 600
consensus_5422#1 -----ATCGCCCCNA---GGTGATTTTNGGTTA-CNAGCTATACTTCCATCTCTATCACC 51
***** ** ****** ***** ************************
consensus_5422#0 TTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCACGCACCCTG 660
consensus_5422#1 TTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCGCGCACCCTG 111
************************************************** *********
consensus_5422#0 TATTGTGTGATGTTGGCACGTGTTACAGGGTTTTTCAGGAG-CTCCCATAACTTTGGGAC 719
consensus_5422#1 TATTGTGTGATGTTGGCACATGTTACAGGGGTTTTCAGGAGACTCCCATAGCTGTGGGAC 171
******************* ********** ********** ******** ** ******
consensus_5422#0 ACTTTATTTACTCTTTCTTACGTGAACTAAACCTATTGT-AATGGGAATTGGACTCTATA 778
consensus_5422#1 ACTTTATTTACTCTTTCTTACGTGAACTAAACTTCTTGCGAATGGGAATTGGACTCTATA 231
******************************** * *** ********************
consensus_5422#0 TCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCC 838
consensus_5422#1 TCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCC 291
************************************************************
consensus_5422#0 GTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGGAAGTG 898
consensus_5422#1 GTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGG-AAGTG 350
****************************************************** *****
consensus_5422#0 TCCCACAACTATGAGAGCCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTG 958
consensus_5422#1 TCCCACAACTATGAGAACCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTG 410
**************** *******************************************
consensus_5422#0 TTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAA 1018
consensus_5422#1 TTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAA 470
************************************************************
consensus_5422#0 CCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTAT 1078
consensus_5422#1 CCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTAT 530
************************************************************
consensus_5422#0 ATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTTTGAAATA 1138
consensus_5422#1 ATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTT-GAAATA 589
***************************************************** ******
consensus_5422#0 GGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGT 1198
consensus_5422#1 GGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGT 649
************************************************************
consensus_5422#0 ATAAAAACACTTTACAACATAACAAAAACCGCCAAATCTACAATGTACAGAAGAGAACAA 1258
consensus_5422#1 ATAAAAACACTTTACAACATAACAAAAAC-GCCAAATCTACAATGTACAGAAGAGAACAA 708
***************************** ******************************
consensus_5422#0 AAAACCCCAATCCCCCAAACATACGCACACACAAACGAGTACAATGCTGCGTTCGGTGTT 1318
consensus_5422#1 AAAACCC-AATCCCCCACACATACGCACACACAAA-GAGTACAATGCTGCGTTCGGTGTT 766
******* ********* ***************** ************************
consensus_5422#0 GCACATGATT-ACATCTC-AACTATATTATCCANAGACGCCCAGCTTAAAAAATCACAAT 1376
consensus_5422#1 GCACATGATTTACATTTTTAGCTATATTAGTC-CAAGCGCC-AGCTTAGAAA-TCACAAT 823
********** **** * * ******** * * **** ****** *** *******
consensus_5422#0 ACAGGAACCCACTCGCATAG-CAAAAGTGCGCAAATGTTTAAATAATA------------ 1423
consensus_5422#1 ACAGGAACACACTCGCATAGGCAAAAGTGCGCAAAATGTTATAAAATAAATAGGGCATGA 883
******** *********** ************** *** * ****
consensus_5422#0 ------------------------------------------------------------
consensus_5422#1 AATCGCTTTCCTCGTCTCTTCGTTTGAATCGCTACACGGCATCCCGCACACCCAGAGAAA 943
consensus_5422#0 ------------------------------------------------------------
consensus_5422#1 AGGGGTATGAAATGAAAATACAACCATTTGTATGTGTGTGTGTTTGGCCCGAGGGTGTGA 1003
consensus_5422#0 ------------------------------------------------------------
consensus_5422#1 TATAAATAATAACTTCTATATAAATATATATATTTTTTAAACTGATCAATTTCAACACCA 1063
consensus_5422#0 ------------------------------------------------------------
consensus_5422#1 CAATGATAAATGGTGTGTTACAAACCTCTTAACGATTAATTAAATGTGTAAAAGCAAGGA 1123
consensus_5422#0 ------------------------------------------------------------
consensus_5422#1 TAAAATATACATGCATATATATATATACATACATATACGCGCAAACGATTTATACAAAAG 1183
consensus_5422#0 ------------------------------------------------------------
consensus_5422#1 AAAACAAAAATACCTACNAAAGAACGAGGGGGGAAGGCTTCATGAAAAAAAAACAGACCA 1243
consensus_5422#0 ----------------------------------------------
consensus_5422#1 AAACGTAATTTGTAAACTGAGAAATGCCATGGCAATAGAGAGAAAC 1289
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||