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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGGGGAGAACGGTACGTGGCAGTCGCTCCAAAACTCAAACCTCGGGCAGAAGGAGATGAAGATTCGGAAGAAGAAGAAGAAGAAGAAAGCTGGAAGTTTGCCAATAAGCGGAAAAAACGAGAGCAGCAATGGCAAGAACAGGATAATGATGAAGAACTGGACGTTGGGCAGAACTATACGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAATGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGGCTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCACCAACCGATTTCCAAGTAAATCTGATAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTGTTTTGACGGCGAAGATGGTGATAC]
[+] EMBL BM597916 [CCGGGGAGAACGGTACGTGGCAGTCGCTCCAAAACTCAAACCTCGGGCAGAAGGAGATGAAGATTCGGAAGAAGAAGAAGAAGAAGAAAGCTGGAAGTTTGCCAATAAGCGGAAAAAACGAGAGCAGCAATGGCAAGAACAGGATAATGATGAAGAACTGGACGTTGGGCAGAACTATACGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAATGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGGCTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCACCAACCGATTTCCAAGTAAATCTGATAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTGTTTTGACGGCGAAGATGGTGATAC]
consensusID : consensus_5423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[CCGGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAATCAGTTGACACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCCTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAACCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCAGCCAAACAGGCTCAACAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAATCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGACAGCCAAACAGGCTCAACAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTTTTTGACGCAGAGGATGGTGATACAAACATGAAATCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGGAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTT]
[+] EMBL BM590387 [CCGGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAATCAGTTGACACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCCTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAACCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCAGCCAAACAGGCTCAACAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAATCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGACAGCCAAACAGGCTCAACAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTTTTTGACGCAGAGGATGGTGATACAAACATGAAATCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGGAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTT]
consensusID : consensus_5423#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[CCGCCCACGCGTCCGGAACTATACGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAATGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGGCTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCACCAACCGATTTCCAAGTAAATCTGATAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAATATGAAACCCGTTGCCACTAACCGATTTCCCAGCAAATCTGAAAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCTCAGCAAGGAATTAAACCTTTCGCTGGCAACAAAGTGGGTGT]
[+] EMBL BM653671 [CCGCCCACGCGTCCGGAACTATACGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAATGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGGCTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCACCAACCGATTTCCAAGTAAATCTGATAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAATATGAAACCCGTTGCCACTAACCGATTTCCCAGCAAATCTGAAAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCTCAGCAAGGAATTAAACCTTTCGCTGGCAACAAAGTGGGTGT]
consensusID : consensus_5423#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[AGAATCCCCGAGGTTTATGCAAACAGGCCCAGCAAGGCAATTAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGTGTGATACAAACATGAAACCAGTTCCCACCATGCGTTTTCCCAGTAAATCTGATAGACAAAGCGATCTTCATACCGTCTTGGGCGGCCAAACAGTGCCCAGCAATAGTAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTTTGGCGCGGATGATAATGATAATGAACGGGCAGAATTTACTTCCAACCAACCTAAAAAGCGACAATTTCAATAGCAAATCAGACCTTCATCCTTCGGCACGGACGGCATGGTACGGCTANAAGCAAGCGCGAACATGGAACTAAAATCTTTGATGGGAATGGTACGAGTGCAGCTTTCCACCAAACGCACACCCTCNNAAACACACTGATCTTCAACCCATCGTGGGGCGGCTACAACAAGGCACAGAGGCCGGGACATCTAAAACCCATCTANGCCCGGGCCCACACNCCGCATCGCCCCTNCCCCAACNCGCACTNNNGANTCGCACTCACATNTGACCCGCGCTCG]
[+] EMBL AL933532 [AGAATCCCCGAGGTTTATGCAAACAGGCCCAGCAAGGCAATTAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGTGTGATACAAACATGAAACCAGTTCCCACCATGCGTTTTCCCAGTAAATCTGATAGACAAAGCGATCTTCATACCGTCTTGGGCGGCCAAACAGTGCCCAGCAATAGTAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTTTGGCGCGGATGATAATGATAATGAACGGGCAGAATTTACTTCCAACCAACCTAAAAAGCGACAATTTCAATAGCAAATCAGACCTTCATCCTTCGGCACGGACGGCATGGTACGGCTANAAGCAAGCGCGAACATGGAACTAAAATCTTTGATGGGAATGGTACGAGTGCAGCTTTCCACCAAACGCACACCCTCNNAAACACACTGATCTTCAACCCATCGTGGGGCGGCTACAACAAGGCACAGAGGCCGGGACATCTAAAACCCATCTANGCCCGGGCCCACACNCCGCATCGCCCCTNCCCCAACNCGCACTNNNGANTCGCACTCACATNTGACCCGCGCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5423#0 CCGGGGAGAACGGTACGTGGCAGTCGCTCCAAAACTCAAACCTCGGGCAGAAGGAGATGA 60
consensus_5423#2 ------------------------------------------------------------
consensus_5423#1 ------------------------------------------------------------
consensus_5423#3 ------------------------------------------------------------
consensus_5423#0 AGATTCGGAAGAAGAAGAAGAAGAAGAAAGCTGGAAGTTTGCCAATAAGCGGAAAAAACG 120
consensus_5423#2 ------------------------------------------------------------
consensus_5423#1 ------------------------------------------------------------
consensus_5423#3 ------------------------------------------------------------
consensus_5423#0 AGAGCAGCAATGGCAAGAACAGGATAATGATGAAGAACTGGACGT-TGGGCAGAACTATA 179
consensus_5423#2 -------------------------------------CCGCCCACGCGTCCGGAACTATA 23
consensus_5423#1 ------------------------------CCGGGCATTAAACCTTTCGCTGG--CAAAA 28
consensus_5423#3 ------------------------------------------------------------
consensus_5423#0 CGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAA 239
consensus_5423#2 CGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAA 83
consensus_5423#1 AGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAATCAGTTGACACCAACCGA- 87
consensus_5423#3 ------------------------------------------------------------
consensus_5423#0 TGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGG 299
consensus_5423#2 TGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGG 143
consensus_5423#1 TATCCCAACAA--ATCTGATAGTCAAAGCGATCTTCATCCCTCTTGGGCGGCCAAACAGG 145
consensus_5423#3 ---------------------------AGAATCCCCGAGGTTTATG------CAAACAGG 27
*** * * ** ********
consensus_5423#0 CTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATG-GT 358
consensus_5423#2 CTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATG-GT 202
consensus_5423#1 CCCAGCAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATG-GT 204
consensus_5423#3 CCCAGCAAGGCAATTAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGTGT 87
* ******** * * ******* ************ * ** ******* ** **** **
consensus_5423#0 GATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGC 418
consensus_5423#2 GATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGC 262
consensus_5423#1 GATACAAACATGAAACCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGC 264
consensus_5423#3 GATACAAACATGAAACCAGTTCCCACCATGCGTTTTCCCAGTAAATCTGATAGACAAAGC 147
***************** *** ***** ** * ***** *********** ******
consensus_5423#0 GATCTTCAT-CCGTCTTGGGCGGCCAAACAG-GCCCAGCAA--GGAATTAAACCTTTCGC 474
consensus_5423#2 GATCTTCAT-CCGTCTTGGGCGGCCAAACAG-GCCCAGCAA--GGAATTAAACCTTTCGC 318
consensus_5423#1 GATCTTCAT-CCGTCTTGGGCAGCCAAACAG-GCTCAACAA--GGAATTAAACCTTTCGC 320
consensus_5423#3 GATCTTCATACCGTCTTGGGCGGCCAAACAGTGCCCAGCAATAGTAATTAAACCTTTCGC 207
********* *********** ********* ** ** *** * ***************
consensus_5423#0 TGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCAC 534
consensus_5423#2 TGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCAC 378
consensus_5423#1 TGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAATCCGTTGCCAC 380
consensus_5423#3 TGGCAAAAAGGTGGTGTTTGGCGCGGATGATAATGATAATGAACGGGCAGAATTTACTTC 267
*** ****** * ******* ** ** *** ***** * * * ** * *
consensus_5423#0 CAACCGATTTCCAAG----TAAATCTGATAGACAAAGCGATCTTCATCCGTCT---TGGG 587
consensus_5423#2 CAACCGATTTCCAAG----TAAATCTGATAGACAAAGCGATCTTCATCCGTCT---TGGG 431
consensus_5423#1 CAAACGATATCCCAA----CAAATCTGATAGTCAAAGCGATCTTCATCCGTCT---TGGA 433
consensus_5423#3 CAACCAACCTAAAAAGCGACAATTTCAATAGCAAATCAGACCTTCATCCTTCGGCACGGA 327
*** * * * * ** * **** ** ** ******** ** **
consensus_5423#0 CGGC------------CAAACAGGCCC-AGCAAGGAATTAAACCTTTTGCTGGCAAAAA- 633
consensus_5423#2 CGGC------------CAAACAGGCCC-AGCAAGGAATTAAACCTTTTGCTGGCAAAAA- 477
consensus_5423#1 CAGC------------CAAACAGGCTC-AACAAGGAATTAAACCTTTTGCTGGCAAAAA- 479
consensus_5423#3 CGGCATGGTACGGCTANAAGCAAGCGCGAACATGGAACTAAAATCTTTGATGGGAATGGT 387
* ** ** ** ** * * ** **** **** **** *** **
consensus_5423#0 --GATTGTG--TTTTGAC--GGCGAAGATGGTGATAC----------------------- 664
consensus_5423#2 --GATTGTG--TTT-GAC--GGCGAAGATGGTGATACAAATATGAAACCCGTTGCCACTA 530
consensus_5423#1 --GATTGTT--TTT-GAC--GCAGAGGATGGTGATACAAACATGAAATCCGTTGCCACCA 532
consensus_5423#3 ACGAGTGCAGCTTTCCACCAAACGCACACCCTCNNAAACACACTGATCTTCAACCCATCG 447
** ** *** ** * * * *
consensus_5423#0 ------------------------------------------------------------
consensus_5423#2 ACCGATTTCC-CAGCAAATCTGAAAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAA 589
consensus_5423#1 AACGATATCC-CAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAA 591
consensus_5423#3 TGGGGCGGCTACAACAAGGCACAGAGGCCGGGACATCTAAAACCCATCTANGCCCGGGCC 507
consensus_5423#0 ------------------------------------------------------------
consensus_5423#2 CAGGCTCAGCAAGG-AATTAAACCTTTCGCTGGCAACAAAGTGGGTGT------------ 636
consensus_5423#1 CAGGCCCAGCAAGGGAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTT------------ 639
consensus_5423#3 CACACNCCGCATCGCCCCTNCCCCAACNCGCACTNNNGANTCGCACTCACATNTGACCCG 567
consensus_5423#0 ------
consensus_5423#2 ------
consensus_5423#1 ------
consensus_5423#3 CGCTCG 573
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||