cluster # 5427

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Anopheles gambiae
cluster # 5427 cluster # 5427 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5427#0 length = 703 sequences # 3

consensus_5427#1 length = 395 sequences # 1

consensusID : consensus_5427#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 703
fasta sequence

                              [CCGCCCCGGTGCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGAAATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCATACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAGGAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCGATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACGATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAGACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAAGCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCAAGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAA-GGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTC]

[+] EMBL BM636528             [CCGCCCCGGTGCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACAACGAAAATTTGCTATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCATACCGGACGGGGCCGGTAAGCAAAACACTGCCGGAACGAACGATTCGCATCCAGCGAA   AGGAGCACCGTCTACGGTGGAAGGTGACTCGGACCGTGACCACCGGGAGCGTGATTCCGATGCTTCTAGCGACCGCGATTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM616419             [     CCGGGTCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGAAATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCATACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAGGAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCGATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACGATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAGACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAAGCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCAAGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAA GGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTC]
[+] EMBL BM589500             [             ccgCAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGAAATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCATACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAGGAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCGATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACGATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAGACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAAGCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCAAGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGAC              ]




>consensus_5427#0
CCGCCCCGGTGCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGA
AATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCA
TACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAG
GAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCG
ATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACG
ATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAG
ACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAA
GCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCT
ACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACT
GCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCA
AGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCT
GCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTC

consensusID : consensus_5427#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [ATCGCCCCGAGGTTTAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGCGTCAAGCGGCTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTCCTGGCTGCCGCCGACCCATCCGGATGCGAAGCTGTCGAAAAGTGCGAAAGTGCTGCGGCGCGAGCTGATGGAAGAGCAGAAGCAGAAGGAGGCGGCGAGCGAAGCCGTCCCGCCAACGGTTGTGGTGGAAAGCTATCCACCGGCG]

[+] EMBL AL933682             [ATCGCCCCGAGGTTTAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGCGTCAAGCGGCTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTCCTGGCTGCCGCCGACCCATCCGGATGCGAAGCTGTCGAAAAGTGCGAAAGTGCTGCGGCGCGAGCTGATGGAAGAGCAGAAGCAGAAGGAGGCGGCGAGCGAAGCCGTCCCGCCAACGGTTGTGGTGGAAAGCTATCCACCGGCG]




>consensus_5427#1
ATCGCCCCGAGGTTTAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACA
ACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGA
TCGAGAAGGACTACGACAAGCGCGTCAAGCGGCTGCTCGAGCGCTACCCGCTGCCGAAGA
ACTGGCGCAAGGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGC
GCATTGTCTCCTGGCTGCCGCCGACCCATCCGGATGCGAAGCTGTCGAAAAGTGCGAAAG
TGCTGCGGCGCGAGCTGATGGAAGAGCAGAAGCAGAAGGAGGCGGCGAGCGAAGCCGTCC
CGCCAACGGTTGTGGTGGAAAGCTATCCACCGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5427#0      CCGCCCCGGTGCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGA 60
consensus_5427#1      ------------------------------------------------------------
                                                                                  

consensus_5427#0      AATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCA 120
consensus_5427#1      ------------------------------------------------------------
                                                                                  

consensus_5427#0      TACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAG 180
consensus_5427#1      ------------------------------------------------------------
                                                                                  

consensus_5427#0      GAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCG 240
consensus_5427#1      ------------------------------------------------------------
                                                                                  

consensus_5427#0      ATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACG 300
consensus_5427#1      ------------------------------------------------------------
                                                                                  

consensus_5427#0      ATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAG 360
consensus_5427#1      ------------------------------------------------------------
                                                                                  

consensus_5427#0      ACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAA 420
consensus_5427#1      ------------------------------------------------------------
                                                                                  

consensus_5427#0      GCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCT 480
consensus_5427#1      ---------------------------------ATCGCCCCGAGGTTTAACGGTACGGCT 27
                                                       * *       *    ************

consensus_5427#0      ACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACT 540
consensus_5427#1      ACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACT 87
                      ************************************************************

consensus_5427#0      GCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCA 600
consensus_5427#1      GCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGCGTCA 147
                      ******************************************************* ****

consensus_5427#0      AGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCT 660
consensus_5427#1      AGCGGCTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCT 207
                      ***** ******************************************************

consensus_5427#0      GCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTC----------------- 703
consensus_5427#1      GCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTCCTGGCTGCCGCCGACCC 267
                      *******************************************                 

consensus_5427#0      ------------------------------------------------------------
consensus_5427#1      ATCCGGATGCGAAGCTGTCGAAAAGTGCGAAAGTGCTGCGGCGCGAGCTGATGGAAGAGC 327
                                                                                  

consensus_5427#0      ------------------------------------------------------------
consensus_5427#1      AGAAGCAGAAGGAGGCGGCGAGCGAAGCCGTCCCGCCAACGGTTGTGGTGGAAAGCTATC 387
                                                                                  

consensus_5427#0      --------
consensus_5427#1      CACCGGCG 395