cluster # 5432

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Anopheles gambiae
cluster # 5432 cluster # 5432 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5432#0 length = 1267 sequences # 3

consensus_5432#1 length = 536 sequences # 1

consensusID : consensus_5432#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1267
fasta sequence

                              [AGAATGGTGATCGTAGGCAAGAACTAGAGTGCTGATGGAGTCGTATTGTGAAAGTATAGTAAGTGATCGCAGCTAAACATGACACCACATTTTACAAACACTGTGCGTCAATGAAAAAAGGGAACCCGGTTTGAGAGAAAAGAGAAAAAAAAAGCGAAACAACCAAACTCCAGAAAGCGAACTTGAAACTCCCAAGATAAAAATGATATAGAAACACACGGATTCGTTCGCAGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAACACATGACGGCTAATATGTAAGCGTTTAGTATTTTAGTAGAGTAACGTATAAGTTATGTCTCTTTATGGTTTTTTGTTTGTTTTATTTTTGNTTTTAAATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGATCTTAGTGTAGTAGCAGCGGAAGTAGTAGTAAGAGGATGAACAAGAAGCAAAGTGCAGCAAACACGGTTTTGTAATGTCGTACGGCTATCGTACCGAAAGATTGAATTTCAAACCAATCGTCCATTTGTTTGGACGGTTCACAGATTTAGTTTATTTGTTTGTTTGTTTGTTTTATTTTTTTTATTTAAAAACAAAACTAATTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAGTTGTCTTGTATTATTTATAAACAGTCCCAACAATTACCAACACATCTCCTCTTCCCTTTATACTTAAACCATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAAAAAAAAAAACACAACAAACCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAGAGCTGTAAACAGAGACGATAACAACTGAGGGAATTTGATAAAAAAAAACCGATCTGTGTAAAATTGATCGATAAATTATTAAAATATTTAAAACCCGAAAAAAAAAAAAAAAAAAAAAAAAACGGACGCGTGGGCGG]

[+] EMBL BX621598             [AGAATGGTGATCGTAGGCAAGAACTAGAGTGCTGATGGAGTCGTATTGTGAAAGTATAGTAAGTGATCGCAGCTAAACATGACACCACATTTTACAAACACTGTGCGTCAATGAAAAAAGGGAACCCGGTTTGAGAGAAAAGAGAAAAAAAAAGCGAAACAACCAAACTCCAGAAAGCGAACTTGAAACTCCCAAGATAAAAATGATATAGAAACACACGGATTCGTTCGCAGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAACACATGACGGCTAATATGTAAGCGTTTAGTATTTTAGTAGAGTAACGTATAAGTTATGTCTCTTTATGGTTTTTTGTTTGTTTTATTTTTGNTTTTAAATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGATCTTAGTGTAGTAGCAGCGGAAGTAGTAGTAAGAGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BX624673             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGATCTTAGTGTAGTAGCAGCGGAAGTAGTAGTAAGAGGATGAACAAGAAGCAAAGTGCAGCAAACACGGTTTTGTAATGTCGTACGGCTATCGTACCGAAAGATTGAATTTCAAACCAATCGTCCATTTGTTTGGACGGTTCACAGATTTAGTTTATTTGTTTGTTTGTTTGTTTTATTTTTTTTATTTAAAAACAAAACTAATTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAGTTGTCTTGTATTATTTATAAACAGTCCCAACAATTACCAACACATCTCCTCTTCCCTTTATACTTAAACCATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAAAAAAAAAAACACAACAAACCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAGAGCTGTAAACAGAGACGATAACAACTGAGGGAATT                                                                                                      ]
[-] EMBL BM651743             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAGTTGTCTTGTATTATTTATAAACAGTCCCAACAATTACCAACACATCCCCTTTTCCCTTTATTCTTAAACCATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAGAAAAAAAAACCCAACAAACCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAGAGCTGTAAACAGAGACGATAACAACTGAGGGAATTTGATAAAAAAAAACCGATCTGTGTAAAATTGATCGATAAATTATTAAAATATTTAAAACCCGAAAAAAAAAAAAAAAAAAAAAAAAACGGACGCGTGGGCGG]




>consensus_5432#0
AGAATGGTGATCGTAGGCAAGAACTAGAGTGCTGATGGAGTCGTATTGTGAAAGTATAGT
AAGTGATCGCAGCTAAACATGACACCACATTTTACAAACACTGTGCGTCAATGAAAAAAG
GGAACCCGGTTTGAGAGAAAAGAGAAAAAAAAAGCGAAACAACCAAACTCCAGAAAGCGA
ACTTGAAACTCCCAAGATAAAAATGATATAGAAACACACGGATTCGTTCGCAGGAATTGT
GAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCC
GTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTG
AATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTA
CCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACA
ACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGA
AGAGATCTGCTTGCCATCATACGAGAAAAAAAAACACATGACGGCTAATATGTAAGCGTT
TAGTATTTTAGTAGAGTAACGTATAAGTTATGTCTCTTTATGGTTTTTTGTTTGTTTTAT
TTTTGNTTTTAAATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGATCTTAGTGTA
GTAGCAGCGGAAGTAGTAGTAAGAGGATGAACAAGAAGCAAAGTGCAGCAAACACGGTTT
TGTAATGTCGTACGGCTATCGTACCGAAAGATTGAATTTCAAACCAATCGTCCATTTGTT
TGGACGGTTCACAGATTTAGTTTATTTGTTTGTTTGTTTGTTTTATTTTTTTTATTTAAA
AACAAAACTAATTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAGTTGTCTTGTA
TTATTTATAAACAGTCCCAACAATTACCAACACATCTCCTCTTCCCTTTATACTTAAACC
ATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAAAAAAAAAAACACAACAAA
CCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAGAGCTGTAAAC
AGAGACGATAACAACTGAGGGAATTTGATAAAAAAAAACCGATCTGTGTAAAATTGATCG
ATAAATTATTAAAATATTTAAAACCCGAAAAAAAAAAAAAAAAAAAAAAAAACGGACGCG
TGGGCGG

consensusID : consensus_5432#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [GTATAGTAAGTGATCGCAGCTAAACATGACACCATATTTTACAAACACTGTGCGTCAATGAAAAAAGGGAAACCAGTTTGAGAGAAAAGAGGAAAAAAGCGAAACAACCAAACTCCAGAAATGCTTGGAAAGCGGACTTGAAACTCCCAAGATGAAAATGATATAGAAACACACGGATTCGTTCGCTGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAATACATGA]

[-] EMBL BX627456             [GTATAGTAAGTGATCGCAGCTAAACATGACACCATATTTTACAAACACTGTGCGTCAATGAAAAAAGGGAAACCAGTTTGAGAGAAAAGAGGAAAAAAGCGAAACAACCAAACTCCAGAAATGCTTGGAAAGCGGACTTGAAACTCCCAAGATGAAAATGATATAGAAACACACGGATTCGTTCGCTGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAATACATGA]




>consensus_5432#1
GTATAGTAAGTGATCGCAGCTAAACATGACACCATATTTTACAAACACTGTGCGTCAATG
AAAAAAGGGAAACCAGTTTGAGAGAAAAGAGGAAAAAAGCGAAACAACCAAACTCCAGAA
ATGCTTGGAAAGCGGACTTGAAACTCCCAAGATGAAAATGATATAGAAACACACGGATTC
GTTCGCTGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAG
AAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCAT
TATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGT
GTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATG
AAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTT
TCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAATACATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5432#0      AGAATGGTGATCGTAGGCAAGAACTAGAGTGCTGATGGAGTCGTATTGTGAAAGTATAGT 60
consensus_5432#1      -----------------------------------------------------GTATAGT 7
                                                                           *******

consensus_5432#0      AAGTGATCGCAGCTAAACATGACACCACATTTTACAAACACTGTGCGTCAATGAAAAAAG 120
consensus_5432#1      AAGTGATCGCAGCTAAACATGACACCATATTTTACAAACACTGTGCGTCAATGAAAAAAG 67
                      *************************** ********************************

consensus_5432#0      GGAACCCGGTTTGAGAGAAAAGAGAAAAAAAAAGCGAAACAACCAAACTCCAGAAA---- 176
consensus_5432#1      GGAAACCAGTTTGAGAGAAAAGAGGAAAAAA--GCGAAACAACCAAACTCCAGAAATGCT 125
                      **** ** **************** ******  ***********************    

consensus_5432#0      ------GCGAACTTGAAACTCCCAAGATAAAAATGATATAGAAACACACGGATTCGTTCG 230
consensus_5432#1      TGGAAAGCGGACTTGAAACTCCCAAGATGAAAATGATATAGAAACACACGGATTCGTTCG 185
                            *** ****************** *******************************

consensus_5432#0      CAGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAA 290
consensus_5432#1      CTGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAA 245
                      * **********************************************************

consensus_5432#0      CAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTT 350
consensus_5432#1      CAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTT 305
                      ************************************************************

consensus_5432#0      AGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCA 410
consensus_5432#1      AGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCA 365
                      ************************************************************

consensus_5432#0      AAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATG 470
consensus_5432#1      AAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATG 425
                      ************************************************************

consensus_5432#0      AACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTC 530
consensus_5432#1      AACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTC 485
                      ************************************************************

consensus_5432#0      TCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAACACATGACGGCTAATA 590
consensus_5432#1      TCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAATACATGA--------- 536
                      ******************************************** ******         

consensus_5432#0      TGTAAGCGTTTAGTATTTTAGTAGAGTAACGTATAAGTTATGTCTCTTTATGGTTTTTTG 650
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      TTTGTTTTATTTTTGNTTTTAAATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGA 710
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      TCTTAGTGTAGTAGCAGCGGAAGTAGTAGTAAGAGGATGAACAAGAAGCAAAGTGCAGCA 770
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      AACACGGTTTTGTAATGTCGTACGGCTATCGTACCGAAAGATTGAATTTCAAACCAATCG 830
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      TCCATTTGTTTGGACGGTTCACAGATTTAGTTTATTTGTTTGTTTGTTTGTTTTATTTTT 890
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      TTTATTTAAAAACAAAACTAATTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAG 950
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      TTGTCTTGTATTATTTATAAACAGTCCCAACAATTACCAACACATCTCCTCTTCCCTTTA 1010
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      TACTTAAACCATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAAAAAAAAAA 1070
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      ACACAACAAACCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAG 1130
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      AGCTGTAAACAGAGACGATAACAACTGAGGGAATTTGATAAAAAAAAACCGATCTGTGTA 1190
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      AAATTGATCGATAAATTATTAAAATATTTAAAACCCGAAAAAAAAAAAAAAAAAAAAAAA 1250
consensus_5432#1      ------------------------------------------------------------
                                                                                  

consensus_5432#0      AACGGACGCGTGGGCGG 1267
consensus_5432#1      -----------------