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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1545 fasta sequence
[CCGCGTGGTAACATCGGTCGTCAGTTTGGGCGTGCTGCTTGCGACGCTCTGTCTGTGCGTGTACCTGCTCGTGGTGCGTAAGTATTCCTTCTGGCGATCGTACCATGTACCGTACGTCGAGCCGGAGCTGCCGTACGGCAACTTCAAGGAGATGGGAAAATCAATCCATCCAGCTCACCTCAGCCAGCGGTTTTACGAGCAGTACAAAGCAGTGCCTGGAAGTCCCGGTTTTGTGGGGCTGTACATCTTTCTCAATCCGGTGCTGCTCGTTACGGATCTGAAGCTAGCGAAGCGCATTCTGATCGAAGACTTCCATCACTTCCCCGACCGGGGTGTGTACTTCAACGAGAAGGATGATCCTCTGTCGGCGCATCTCTTCGCGATCGAGGGGCAACGGTGGAAGGACCTGAGGGCGAAGATCACACCCACCTTCACAAGTGGGCGTATGAAGGCGGCATTCCCACTAGTGCTCGGCATTGCCGAGCAGTTCTGTGGCTTTCTGCGCGAACAGTACGCGTCGGACGATGTGGTGGAGGTACGCGATCTTATGGCACGCTTCACGACGGACGTGATCGGTTCGTACGCGTTCGGGCTGGAGTTGAACAGCTTCCGGGATCCGCAGAACGAGTTCCGGCGCATCGGGCGCAAACACTTCGACACACCGCGCAACCATCCGCTCAAAGTGTTTATCATGAAAACGTTCCGCGGGCTGGCGAACCGGCTCGGGCTGAAACTGCTGCACGACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGAGACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGATAAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAG-ATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCTCAGCGGAAGGCCCGGGAGTGTGTGCTCGAGGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACAA-A-ACCATACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGAACGGA-TGGCACGGCGTGATCCCTGTGCCTATCTGCCG-TTCGGGGAGGGTCCCCGGATATGCATTGGGCTGCGGTTTGGCATGATGCAGGCACGGATCGGGCTGGCACTGCTGCTGAAACACTTCCAAGTGCTGCCCTGTAAGGAGACGGACGTGCCCTTAACCTACTCCCCGAGGGCGTTCGTGCTGACACCGGTTAATGGCGTGCGGTTGCGGTTGGTTAAGTACGATGCGCACGGTGCAGCAGA]
[+] EMBL BM587970 [CCGCGTGGTAACATCGGTCGTCAGTTTGGGCGTGCTGCTTGCGACGCTCTGTCTGTGCGTGTACCTGCTCGTGGTGCGTAAGTATTCCTTCTGGCGATCGTACCATGTACCGTACGTCGAGCCGGAGCTGCCGTACGGCAACTTCAAGGAGATGGGAAAATCAATCCATCCAGCTCACCTCAGCCAGCGGTTTTACGAGCAGTACAAAGCAGTGCCTGGAAGTCCCGGTTTTGTGGGGCTGTACATCTTTCTCAATCCGGTGCTGCTCGTTACGGATCTGAAGCTAGCGAAGCGCATTCTGATCGAAGACTTCCATCACTTCCCCGACCGGGGTGTGTACTTCAACGAGAAGGATGATCCTCTGTCGGCGCATCTCTTCGCGATCGAGGGGCAACGGTGGAAGGACCTGAGGGCGAAGATCACACCCACCTTCACAAGTGGGCGTATGAAGGCGGCATTCCCACTAGTGCTCGGCATTGCCGAGCAGTTCTGTGGCTTTCTGCGCGAACAGTACGCGTCGGACGATGTGGTGGAGGTACGCGATCTTATGGCACGCTTCACGACGGACGTGATCGGTTCGTACGCGTTCGGGCTGGAGTTGAACAGCTTCCGGGATCCGCAGAACGAGTTCCGGCGCATC ]
[+] EMBL AY193728 [ GTGGTAACATCGGTCATCAGTTTGGGCGTGCTGCTTGCAACGCTCTGTCTGTGCGTGTACCTGCTCGTGGTGCGTAAGTATTCCTTCTGGCGATCGTACCATGTACCGTACGTCGAGCCGGAGCTGCCGTACGGCAACTTCAAGGAGATGGGCAAATCGATCCATCCGGCTCACCTCAGCCAACGGTTTTACGAGCAATACAAAGCAGTGCCTGGTAGTCCCGGTTTTGTGGGGCTGTACATCTTTCTCAACCCGGTGCTGCTCGTTACGGATCTGAAGCTAGCGAAACGCATTCTGATCGAAGACTTCCATCACTTCCCCGACCGGGGTGTGTACTTCAACGAGAAGGATGATCCTCTGTCGGCGCATCTCTTCGCGATCGAGGGGCAACGGTGGAAGGACCTGAGGGCGAAGATCACACCCACCTTCACAAGTGGGCGTATGAAGGCGGCATTCCCACTAGTGCTCGGCATTGCCGAGCAGTTCTGTGGCTTTCTGCGCGAACAGTACACGTCGGACGATGTGGTGGAGGTACGCGATCTTATGGCACGCTTCACGACGGACGTGATCGGTTCGTACGCGTTCGGGCTGGAGTTGAACAGCTTCCGGGATCCGCAGAACGAGTTCCGGCGCATCGGGCGCAAACACTTCGACACACCGCGCAACCATCCGCTCAAAGTGTTTATCATGAAAACGTTCCGCGGGCTGGCGAACCGGCTCGGGCTGAAACTGCTGCACGACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGAGACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGATAAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAG ATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCTCAGCGGAAGGCCCGGGAGTGTGTGCTCGAGGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACAA A ACCATACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGAACGGA TGGCACGGCGTGATCCCTGTGCCTATCTGCCG TTCGGGGAGGGTCCCCGGATATGCATTGGGCTGCGGTTTGGCATGATGCAGGCACGGATCGGGCTGGCACTGCTGCTGAAACACTTCCAAGTGCTGCCCTGTAAGGAGACGGACGTGCCCTTAACCTACTCCCCGAGGGCGTTCGTGCTGACACCGGTTAATGGCGTGCGGTTGCGGTTGGTTAAGTACGATGCGCACGGTGCAGCAGA]
[+] EMBL AL934532 [ cgatntaCGCTGGAGGGCTCGCACGAGCATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCTCAGCGGAAGGCCCGGGAGTGTGTGCTCGAGGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACAACACACCATACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGAACGGACTGGCACGGCGTGATCCCTGTGCCTATCTGCCGCTTCGGGGAGGGTCCCCGGATATGCATTGGGCTGCGGTTTGGCATGATGCAGGCACGGATCGGGCTGGCACTGCTGCTGAAACACTTCCAAGT ]
consensusID : consensus_5434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[CCGCAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGAGACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGATAAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAGATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCACAGCGGAAGGCCCGGGAGTGTGTGCTGGATGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACCAAACCGTACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGGAA]
[+] EMBL BM625810 [CCGCAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGAGACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGATAAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAGATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCACAGCGGAAGGCCCGGGAGTGTGTGCTGGATGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACCAAACCGTACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5434#0 CCGCGTGGTAACATCGGTCGTCAGTTTGGGCGTGCTGCTTGCGACGCTCTGTCTGTGCGT 60
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 GTACCTGCTCGTGGTGCGTAAGTATTCCTTCTGGCGATCGTACCATGTACCGTACGTCGA 120
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 GCCGGAGCTGCCGTACGGCAACTTCAAGGAGATGGGAAAATCAATCCATCCAGCTCACCT 180
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 CAGCCAGCGGTTTTACGAGCAGTACAAAGCAGTGCCTGGAAGTCCCGGTTTTGTGGGGCT 240
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 GTACATCTTTCTCAATCCGGTGCTGCTCGTTACGGATCTGAAGCTAGCGAAGCGCATTCT 300
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 GATCGAAGACTTCCATCACTTCCCCGACCGGGGTGTGTACTTCAACGAGAAGGATGATCC 360
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 TCTGTCGGCGCATCTCTTCGCGATCGAGGGGCAACGGTGGAAGGACCTGAGGGCGAAGAT 420
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 CACACCCACCTTCACAAGTGGGCGTATGAAGGCGGCATTCCCACTAGTGCTCGGCATTGC 480
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 CGAGCAGTTCTGTGGCTTTCTGCGCGAACAGTACGCGTCGGACGATGTGGTGGAGGTACG 540
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 CGATCTTATGGCACGCTTCACGACGGACGTGATCGGTTCGTACGCGTTCGGGCTGGAGTT 600
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 GAACAGCTTCCGGGATCCGCAGAACGAGTTCCGGCGCATCGGGCGCAAACACTTCGACAC 660
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 ACCGCGCAACCATCCGCTCAAAGTGTTTATCATGAAAACGTTCCGCGGGCTGGCGAACCG 720
consensus_5434#1 ----------------CCGCAAGCGTTCATCTTC----TTTACCGCCGGCTT-CGAGACG 39
* *** *** *** * * **** **** *** **
consensus_5434#0 GCTCGGGCTGAAACTGCTGCACGACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGA 780
consensus_5434#1 TCGTCCAGTGCGA-TGACCTAC-ACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGA 97
* ** * ** ** *************************************
consensus_5434#0 GACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGAT 840
consensus_5434#1 GACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGAT 157
************************************************************
consensus_5434#0 AAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAGATAGTGGGCCGGCTTTCGGG 900
consensus_5434#1 AAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAGATAGTGGGCCGGCTTTCGGG 217
************************************************************
consensus_5434#0 TGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAG 960
consensus_5434#1 TGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAG 277
************************************************************
consensus_5434#0 TGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCTCAGCGGAAGGCCCG 1020
consensus_5434#1 TGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCACAGCGGAAGGCCCG 337
********************************************* **************
consensus_5434#0 GGAGTGTGTGCTCGAGGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAA 1080
consensus_5434#1 GGAGTGTGTGCTGGATGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAA 397
************ ** ********************************************
consensus_5434#0 AAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGC 1140
consensus_5434#1 AAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGC 457
************************************************************
consensus_5434#0 AATATTGGAGCGAATCGTCACAAAACCATACCGCATTCCGGACACCAGCGTAACACTTCA 1200
consensus_5434#1 AATATTGGAGCGAATCGTCACCAAACCGTACCGCATTCCGGACACCAGCGTAACACTTCA 517
********************* ***** ********************************
consensus_5434#0 CCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCC 1260
consensus_5434#1 CCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCC 577
************************************************************
consensus_5434#0 CGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGAACGGATGGCACGGCGTGATCC 1320
consensus_5434#1 CGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGGAA------------------- 618
************************************** *
consensus_5434#0 CTGTGCCTATCTGCCGTTCGGGGAGGGTCCCCGGATATGCATTGGGCTGCGGTTTGGCAT 1380
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 GATGCAGGCACGGATCGGGCTGGCACTGCTGCTGAAACACTTCCAAGTGCTGCCCTGTAA 1440
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 GGAGACGGACGTGCCCTTAACCTACTCCCCGAGGGCGTTCGTGCTGACACCGGTTAATGG 1500
consensus_5434#1 ------------------------------------------------------------
consensus_5434#0 CGTGCGGTTGCGGTTGGTTAAGTACGATGCGCACGGTGCAGCAGA 1545
consensus_5434#1 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||