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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTGTGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTGGTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGCTGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAACATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCTCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAGGCGGAAACGCGCGACGACATCTATCTGAACATCGTCAATCGGTTCGAGGACAGCAAGCAGGCCCCGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG]
[+] EMBL BM591773 [CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTGTGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTGGTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGCTGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAACATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCTCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAGGCGGAAACGCGCGACGACATCTATCTGAACATCGTCAATCGGTTCGAGGACAGCAAGCAGGCCCCGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG]
[+] EMBL BX623820 [ TCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCCCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAAGCGGAAACGCNCGACGACATCTATCT ]
consensusID : consensus_5443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[CAAGAATTGCCCGAGGCTTAACTGGACGACATCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCACCTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATCTGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAACACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCA]
[+] EMBL AL934850 [CAAGAATTGCCCGAGGCTTAACTGGACGACATCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCACCTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATCTGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAACACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCA]
consensusID : consensus_5443#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[CAGCAGAATCCCCANGAGNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCATCCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCGAGGGGCTGAAGAAATGTTTCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCAAGCCAGGCCCTCTACTTCATCGGGTACGTGGGCGGGGAAGCCCTCTACCTGGATCCGCACACGGTTCAGCGGGTGGGCACGGTCGGCAGCAA]
[+] EMBL BX469133 [CAGCAGAATCCCCANGAGNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCATCCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCGAGGGGCTGAAGAAATGTTTCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCAAGCCAGGCCCTCTACTTCATCGGGTACGTGGGCGGGGAAGCCCTCTACCTGGATCCGCACACGGTTCAGCGGGTGGGCACGGTCGGCAGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5443#0 CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTG 60
consensus_5443#1 ------------------------------------------------------------
consensus_5443#2 ------------------------------------------------------------
consensus_5443#0 TGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTG 120
consensus_5443#1 ------------------------------------------------------------
consensus_5443#2 ------------------------------------------------------------
consensus_5443#0 GTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGC 180
consensus_5443#1 ------------------------------------------------------------
consensus_5443#2 ------------------------------------------------------------
consensus_5443#0 TGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAA 240
consensus_5443#1 ------------------------------------------------------------
consensus_5443#2 -------------------------------------------CAGCAGAATCCCCANGA 17
consensus_5443#0 CATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCC----AC 296
consensus_5443#1 -------------------------------------------CAAGAATTGCCCGAGGC 17
consensus_5443#2 GNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGT----GC 73
* **** *
consensus_5443#0 CGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAA 356
consensus_5443#1 TTAACTGGACGACATCC-GAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAA 76
consensus_5443#2 CGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAA-------CGGACGAAATAG 126
* *** * * ** * ****** * * * * * *
consensus_5443#0 TGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTA 416
consensus_5443#1 TGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTA 136
consensus_5443#2 TGGAACTGT--GCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCAT 184
** * * * ** * * ** *** * * * * * * ** *
consensus_5443#0 TCGCCGCGGGTTCGTCCCGATCGGCA-ACACGCAGCTCACGACGGACAAGGGCTGGGGCT 475
consensus_5443#1 TCGCCGCGGGTTCGTCCCGATCGGCA-ACACGCAGCTCACGACGGACAAGGGCTGGGGCT 195
consensus_5443#2 CCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCG---AGGGGCTGAAGAA 241
* ** * ** * * * ** ** ** * ** ** * ****** *
consensus_5443#0 GCATG-TTGCGCTGCG-GGCAGATGGTGCTGG--CTCAGGCCCTGCTA---CAGCTGCAC 528
consensus_5443#1 GCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCAC 255
consensus_5443#2 ATGTT-TCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCA----AGCCAGGC 296
* * ***** ***** ** ** * * **** * * *
consensus_5443#0 CTGG-GCCGGGA---CTGGGTG--TGGGAGGCG----GAAAC-GCGCGACGACATCTATC 577
consensus_5443#1 CTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATC 315
consensus_5443#2 CCTCTACTTCA----TCGGGTACGTGGGCGGGG-----AAGC----CCTCTACCTGGATC 343
* * **** **** * * ** * * * ** * ***
consensus_5443#0 TGAAC-ATCGTCAATC-GGTTCGAGGACAGCAAGCAGG--CCCCGTTCTCGCTGCACCAG 633
consensus_5443#1 TGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAG 375
consensus_5443#2 CGCAC-ACGGTTCAGCGGGT--GGGCACGGTCGGCAGCAA-------------------- 380
* ** * ** * * *** * * ** * ****
consensus_5443#0 ATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG-------------------- 673
consensus_5443#1 ATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAAC 435
consensus_5443#2 ------------------------------------------------------------
consensus_5443#0 ------------------------------------------------------------
consensus_5443#1 ACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATT 495
consensus_5443#2 ------------------------------------------------------------
consensus_5443#0 ------------------------------------------------------------
consensus_5443#1 CATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAG 555
consensus_5443#2 ------------------------------------------------------------
consensus_5443#0 ---------------
consensus_5443#1 AAAGAACCGGAAGCA 570
consensus_5443#2 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||