cluster # 5447

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Anopheles gambiae
cluster # 5447 cluster # 5447 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5447#0 length = 650 sequences # 2

consensus_5447#1 length = 628 sequences # 2

consensusID : consensus_5447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence

                              [CCGCCCACGCGTCCGAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACGTAAGTGTCGCTAAACGTATGCCGCTAACGGATACTGCTTTTGCTGCAACTGTGCGCAATTAACACGCGAGTGCGCAGTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAAC]

[+] EMBL BM656026             [CCGCCCACGCGTCCGAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACGTAAGTGTCGCTAAACGTATGCCGCTAACGGATACTGCTTTTGCTGCAACTGTGCGCAATTAACACGCGAGTGCGCAGTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAAC]
[+] EMBL BX602755             [                                                                                                                     TATGCCACTAACGGCTACTGCTTTTGTTGCTACTGTGCGCAATTAACTCGCGAGTGCGCAGTTTTCTTACCAATTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGAGATTGGCTTGTGGCCGATGATCCCTGGCAGGAGCATGCCCGATGCTTTGCGGAGTGCAGTTTCTTGAGGCTCGTGTTTGGCGCCGACACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGATGCCAATACGGCAACCACGCCCAG                                                                   ]




>consensus_5447#0
CCGCCCACGCGTCCGAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATC
CCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACGTAAGTGTCGCTAAACGTAT
GCCGCTAACGGATACTGCTTTTGCTGCAACTGTGCGCAATTAACACGCGAGTGCGCAGTT
TTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGAT
CGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGA
TCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGG
CCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCC
TCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGT
GCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGA
TCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTC
CGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAAC

consensusID : consensus_5447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence

                              [CCGAGGTAATATAGCATAATCAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAACAAACGCATGAAACAAGAGCGCGAATGCAAAATATGTTTGACGCAGGAAGC]

[+] EMBL AL934999             [CCGAGGTAATATAGCATAATCAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGC                                                                                                                         ]
[+] EMBL BM613080             [                                              ccgCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACTTTTCTTACCAATTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGAGATTGGCTTGTGGCCGATGATCCCTGGCAGGAGCATGCCCGATGCTTTGCGGAGTGCAGTTTCTTGAGGCTCGTGTTTGGCGCCGACACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGATGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAACAAACGCATGAAACAAGAGCGCGAATGCAAAATATGTTTGACGCAGGAAGC]




>consensus_5447#1
CCGAGGTAATATAGCATAATCAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTG
TAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACTTTTCTTACCAACT
AGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAAC
CGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCG
AGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACT
ACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGC
TTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGA
GACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTA
AGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAA
CGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAACAAACGCATGAAACAAGAGCGCG
AATGCAAAATATGTTTGACGCAGGAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5447#0      -----CCGCCCACGCGTC-CGAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTG 54
consensus_5447#1      CCGAGGTAATATAGCATAATCAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTG 60
                                   ** *    ***************************************

consensus_5447#0      TAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACGTAAGTGTCGCTAA 114
consensus_5447#1      TAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAAC-------------- 106
                      **********************************************              

consensus_5447#0      ACGTATGCCGCTAACGGATACTGCTTTTGCTGCAACTGTGCGCAATTAACACGCGAGTGC 174
consensus_5447#1      ------------------------------------------------------------
                                                                                  

consensus_5447#0      GCAGTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGAT 234
consensus_5447#1      ----TTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGAT 162
                          ********************************************************

consensus_5447#0      CTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATG 294
consensus_5447#1      CTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATG 222
                      ************************************************************

consensus_5447#0      CACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGG 354
consensus_5447#1      CACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGG 282
                      ************************************************************

consensus_5447#0      CGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACG 414
consensus_5447#1      CGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACG 342
                      ************************************************************

consensus_5447#0      CTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTT 474
consensus_5447#1      CTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTT 402
                      ************************************************************

consensus_5447#0      CGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGA 534
consensus_5447#1      CGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGA 462
                      ************************************************************

consensus_5447#0      ACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTT 594
consensus_5447#1      ACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTT 522
                      ************************************************************

consensus_5447#0      CCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAAC---- 650
consensus_5447#1      CCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAACAAAC 582
                      ********************************************************    

consensus_5447#0      ----------------------------------------------
consensus_5447#1      GCATGAAACAAGAGCGCGAATGCAAAATATGTTTGACGCAGGAAGC 628