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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1301 fasta sequence
[GGCGACGACGCAGCCGTCCGAGTACAGCACCAGCATCAGCGGCCACCCGGTCACGGACGACGGGGTCGTGCTGCGGAAGCCCCCGAAGACTGGCTCGACCGCGATCAAGCGCCGGTCGGGCAACAGGCGTTCGCGCACCAAGCTGAAGCGCCGCTGCTCCATCAACGGCCACTTTTACAACCGGGAAACGTCCTTCTTCACGCCCCCGTACGGCTCGCAGATGAACGTTTGGGTGACGTCGCTCGTCAACACGCAGGAGGTGATCAACCTGCTGCTGGAAAATTATAAGGTCGAATCGAGGGCGGAAAACTTTGCGCTCTTCATCGTGCGCGACAACGGCGAGCAGAAGAAGCTGAAGGACGACGACTATCCGCTCGTGACGCGCGTCATTCTTGGCCCCCACGAGGATATTGCGAAACTGTTCCTAATGGACGGTCAGCAAACGCAGGAAATAAGCAGCGAGGTTGCACAGTTTCTGAACCTTTCCATTCCGGTGCCGCGCTATCTTGGAACGGTTCCACGAGGAGGAGCAACGGGAGCTGCACCGGATTCGGATCAAATTTGCCGAACTGCGAAAGCGCATCGTGCAGCGCATGGAATCGCTTAAAGTTTGGCTGTAGACTCCCCCACACACACCATGGTGACTTTCTGTGTGAAACAATTCCCTCTACTCCCTCCCTACTTCTTCTTCTTCTTCGTCGGCTCACCAAGCAGGGGAGAAGTATTCCCGCAAAACAATGAAAAAAAGCAATCAAAGTGAATAGAAATCATATTTGTTGATGTTTGTTGTTAAGCGAAAGTAGGCACGGGCGCTCGCGAAGAGAAGGACGATAGTTTTTTTTATAAGAAAAAAAAACAAAAAAAAAACGGGACTGGCACAGCACAGAGGGAAGCGAGTTAGCGGTGAAGCGCGTGTTTGTGTGCATCATTTAATCTCATAGCCGCTCCGTTCAGCAAGCTAATCAACGTCAGTGTATAGTTTTAGTACGTTTCACTCGTTTGGCAACCTTTTCTTCTTTTTTTTTTTTAATCGGTGCGAACGCGTCCCCTGGGTCGTGATTGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGAAACAAACGGATAGAAAG]
[+] EMBL BX615156 [GGCGACGACGCAGCCGTCCGAGTACAGCACCAGCATCAGCGGCCACCCGGTCACGGACGACGGGGTCGTGCTGCGGAAGCCCCCGAAGACTGGCTCGACCGCGATCAAGCGCCGGTCGGGCAACAGGCGTTCGCGCACCAAGCTGAAGCGCCGCTGCTCCATCAACGGCCACTTTTACAACCGGGAAACGTCCTTCTTCACGCCCCCGTACGGCTCGCAGATGAACGTTTGGGTGACGTCGCTCGTCAACACGCAGGAGGTGATCAACCTGCTGCTGGAAAATTATAAGGTCGAATCGAGGGCGGAAAACTTTGCGCTCTTCATCGTGCGCGACAACGGCGAGCAGAAGAAGCTGAAGGACGACGACTATCCGCTCGTGACGCGCGTCATTCTTGGCCCCCACGAGGATATTGCGAAACTGTTCCTAATGGACGGTCAGCAAACGCAGGAAATAAGCAGCGAGGTTGCACAGTTTCTGAACCTTTCCATTCCGGTGCCGCGCTATCTTGGAACGGTTCCACGAGGAGGAGCAACGGGAGCTGCACCGGATTCGGATCAAATTTGCCGAACTGCGAAAGCGCATCGTGCAGCGCATGGAATCGCTTAAAGTTTGGCTGTAGACTCCCCCACACACACCATGGTGACTTTCTGTGTGAAACAATTCCCTCTACTCCCTCCCTACTTCTTCTTCTTCTTCGTCGGCTCACCAAGCA ]
[+] EMBL BM575441 [ ccgCCCACACACACCATAGTGACTTTCTGTCTGAAACAATTCCCTCTACTCCCTCCCTACTTCTTCTTCTTCTTCGTCGGCTCACCAAGCAGGGGAGAAGTATTCCCGCAAAACAATGAAAAAAAGCAATCAAAGTGAATAGAAATCATATTTGTTGATGTTTGTTGTTAAGCGAAAGTAGGCACGGGCGCTCGCGAAGAGAAGGACGATAGTTTTTTTTATAAGAAAAAAAAACAAAAAAAAAACGGGACTGGCACAGCACAGAGGGAAGCGAGTTAGCGGTGAAGCGCGTGTTTGTGTGCATCATTTAATCTCATAGCCGCTCCGTTCAGCAAGCTAATCAACGTCAGTGTATAGTTTTAGTACGTTTCACTCGTTTGGCAACCTTTTCTTCTTTTTTTTTTTTAATCGGTGCGAACGCGTCCCCTGGGTCGTGATTGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGAAACAAACGGATAGAAAG]
consensusID : consensus_5456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 859 fasta sequence
[GGGGCGACACCCTTACTCGAATTGTATTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGCAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGACTGTCGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGAAGAAAATAGAAACAGAGCGAACGAAGAGTAAGAGCAGCAGGAAACACACTCAAACACTATTGTGTATAGGGCAAGCAATACGTAACACAGCAAAAAAAAAGAAGCAAAACACCACGCACGAAACCTCAACATATTTATCTCCCCACAAGACTCATTCAGGGACTCATAAAAAAAAAAAGAGCTAACCAAACAAAGTGCTACCGATATGAACAAAGAAAAACACACATACAAACATAGAACGATGGCAAGTGAAATTTCGATTCGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAAGGCTATTTAGTGTATTGCCTTTCGGGATCGCGTATCAACCGTAAACCACCCCCAGACTGACAGTCCAGGTGCTTCCGCCTAGAGCCTCATAAAACATGTTCGTGGTTGAAATCAATGGCGGCCATGTGCGCCTGTTCGCCGATCAATGCTGGGTGCAGGAAAGCATTGACAGGATAGGCACGGCTTAAGAGGAGCGTTTCGAGCCAACTAGCAAGCGTTATCGTTTGACCTTTCCTTTCTCAAATACAGCGGTTCTGTTTGCAGTGCTATTTGGTTAGCTGGCGCGTTTATTTTTAGTTGAATTTATTTCCATACCTAACAATGGCATATT]
[+] EMBL CNS096OR [GGGGCGACACCCTTACTCGAATTGTATTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGCAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGACTGTCGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGAAGAAAATAGAAACAGAGCGAACGAAGAGTAAGAGCAGCAGGAAACACACTCAAACACTATTGTGTATAGGGCAAGCAATACGTAACACAGCAAAAAAAAAGAAGCAAAACACCACGCACGAAACCTCAACATATTTATCTCCCCACAAGACTCATTCAGGGACTCATAAAAAAAAAAAGAGCTAACCAAACAAAGTGCTACCGATATGAACAAAGAAAAACACACATACAAACATAGAACGATGGCAAGTGAAATTTCGATTCGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAAGGCTATTTAGTGTATTGCCTTTCGGGATCGCGTATCAACCGTAAACCACCCCCAGACTGACAGTCCAGGTGCTTCCGCCTAGAGCCTCATAAAACATGTTCGTGGTTGAAATCAATGGCGGCCATGTGCGCCTGTTCGCCGATCAATGCTGGGTGCAGGAAAGCATTGACAGGATAGGCACGGCTTAAGAGGAGCGTTTCGAGCCAACTAGCAAGCGTTATCGTTTGACCTTTCCTTTCTCAAATACAGCGGTTCTGTTTGCAGTGCTATTTGGTTAGCTGGCGCGTTTATTTTTAGTTGAATTTATTTCCATACCTAACAATGGCATATT]
consensusID : consensus_5456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTGTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGACTGTTGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGGAGGAAATAGAAACAGAGCGAACGAAGAGTAAGAGCAGCAGGAAACACACTCAAACACTATTGTGTATAGGGCAAGCAATACGTAACACAGCAAAAAAAAAGAAGCAAAACACCACGCACGAAACCTCAACATATTTATCTCCCCACAAGACTCATTCAGGGACTCATCCGAAGCGTTAGAGCTAACCAAACAAAGTGCTACCGATATGAACAAAGAAAAACACACATACAAACATAGAACGATGGCAAGTGAAATTTCGATTTGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAAGGCTATGTAGTGTATTGCCTTTCGGGATCGCGTATCAACCGTAAACCACCCCCAGACTGACAGTCCAGGTGCTTCCGC]
[+] EMBL BM617134 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTGTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGACTGTTGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGGAGGAAATAGAAACAGAGCGAACGAAGAGTAAGAGCAGCAGGAAACACACTCAAACACTATTGTGTATAGGGCAAGCAATACGTAACACAGCAAAAAAAAAGAAGCAAAACACCACGCACGAAACCTCAACATATTTATCTCCCCACAAGACTCATTCAGGGACTCATCCGAAGCGTTAGAGCTAACCAAACAAAGTGCTACCGATATGAACAAAGAAAAACACACATACAAACATAGAACGATGGCAAGTGAAATTTCGATTTGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAAGGCTATGTAGTGTATTGCCTTTCGGGATCGCGTATCAACCGTAAACCACCCCCAGACTGACAGTCCAGGTGCTTCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5456#1 ------------------------------------------------------------
consensus_5456#2 ------------------------------------CCGCCCACGCGTCCGCCCACGCGT 24
consensus_5456#0 GGCGACGACGCAGCCGTCCGAGTACAGCACCAGCATCAGCGGCCACCCGGTCACGGACGA 60
consensus_5456#1 ----------------------------------GGGGCGACACCCTTACTCGAATTGTA 26
consensus_5456#2 CCGGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTA 84
consensus_5456#0 CGGGGTCGTGCTGCGGAAGCCCCCGAAGACTGGCTCGACCGCGATCAAGCGCCGGTCGGG 120
* * * * * *
consensus_5456#1 TTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGCAAATGCAACCACTACTGGTA 86
consensus_5456#2 TTGTAGTATTTTTTT-GTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTA 143
consensus_5456#0 CAACAGGCGTTCGCGCACCAAGCTGAAGCGCCGCTGCTCCATCAACGGCCACTTTTACAA 180
** ** ** * * * ***** * *
consensus_5456#1 CTCGAAAGTGTGTGTGTG--TATGTGTGTGTAAGG---GCAAGAGATCGATAGCATAATG 141
consensus_5456#2 CTCGAAAGTGTGTGTGTGTGTATGTGTGTGTAAGG---GCAAGAGATCGATAGCATAATG 200
consensus_5456#0 CCGGGAAACGTCCTTCTT--CACGCCCCCGTACGGCTCGCAGATGAACGTTTGGGTGACG 238
* * ** ** * * * * *** ** *** ** ** * * * * *
consensus_5456#1 CCAAACTGCCAAACGTGAGAGGT---CCATCCACGCCTGCAGCATTG---------ACTG 189
consensus_5456#2 CCAAACTGCCAAACGTGAGAGGT---CCATCCACGCCTGCAGCATTG---------ACTG 248
consensus_5456#0 TCGCTCGTCAACACGCAGGAGGTGATCAACCTGCTGCTGGAAAATTATAAGGTCGAATCG 298
* * * * *** ***** * * * * *** * *** * *
consensus_5456#1 TCGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGAAGAAAATAGAAACAGAGCGAAC 249
consensus_5456#2 TTGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGGAGGAAATAGAAACAGAGCGAAC 308
consensus_5456#0 AGGGCGGAAAACTTTGCGCTCTTCATCGTGCGCGACAACGGCGAGCAGAAGAAGCTGAAG 358
*** **** * * * ** ** * * * * ** * ***
consensus_5456#1 GAAGAGTAAGAGCAGCAGGAAACACAC-TCA-----AACACTATTGTGTATAGGGC-AAG 302
consensus_5456#2 GAAGAGTAAGAGCAGCAGGAAACACAC-TCA-----AACACTATTGTGTATAGGGC-AAG 361
consensus_5456#0 GACGACGACTATCCGCTCGTGACGCGCGTCATTCTTGGCCCCCACGAGGATATTGCGAAA 418
** ** * * * ** * ** * * *** * * * * *** ** **
consensus_5456#1 CAATACGTAAC--ACAGCAAAAAAA---AAGAAGCAAAACACCA---CGCACGAAACCTC 354
consensus_5456#2 CAATACGTAAC--ACAGCAAAAAAA---AAGAAGCAAAACACCA---CGCACGAAACCTC 413
consensus_5456#0 CTGTTCCTAATGGACGGTCAGCAAACGCAGGAAATAAGCAGCGAGGTTGCACAGTTTCTG 478
* * * *** ** * * *** * *** ** * * **** **
consensus_5456#1 AACATATTTATCTCCCCACAAGACTCATTCAG---GGACTCATAAAAAAAAAAAGAGCTA 411
consensus_5456#2 AACATATTTATCTCCCCACAAGACTCATTCAG---GGACTCATCCGAAGCGTTAGAGCTA 470
consensus_5456#0 AACCTTTCCATTCCGGTGCCGCGCTATCTTGGAACGGTTCCACGAGGAGGAGCAACGGGA 538
*** * * ** * * ** * * ** ** * * * *
consensus_5456#1 ACCAAACAAAGTGCTA--CCGATATGAACAAAGAAAAACACACATACAAACATAGAACGA 469
consensus_5456#2 ACCAAACAAAGTGCTA--CCGATATGAACAAAGAAAAACACACATACAAACATAGAACGA 528
consensus_5456#0 GCTGCACCGGATTCGGATCAAATTTGCCGAACTGCGAAAGCGCAT-CGTGCAGCGCATGG 597
* ** * * * ** ** ** ** * *** * ** * * *
consensus_5456#1 TGGCAAGTGAAATTTCGAT-TCGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAA 528
consensus_5456#2 TGGCAAGTGAAATTTCGAT-TTGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAA 587
consensus_5456#0 AATCGCTTAAAGTTTGGCTGTAGACTCCCCCACACACACCATGGTGACTTTCTGTGTGAA 657
* * ** *** * * * ** ** * * * * ** * * * * * **
consensus_5456#1 GG-------------------CTATTTAGTGTATTGCCTTTCGGGATCGCGTATCAACCG 569
consensus_5456#2 GG-------------------CTATGTAGTGTATTGCCTTTCGGGATCGCGTATCAACCG 628
consensus_5456#0 ACAATTCCCTCTACTCCCTCCCTACTTCTTCTTCTTCTTCGTCGGCTCACCAAGCAGGGG 717
*** * * * * * * ** ** * * ** *
consensus_5456#1 TAAACCACCCCC--AGACTGACAGTCCAGGTGCTTCCGCCTAGAGCCTCATAAAACATGT 627
consensus_5456#2 TAAACCACCCCC--AGACTGACAGTCCAGGTGCTTCCGC--------------------- 665
consensus_5456#0 AGAAGTATTCCCGCAAAACAATGAAAAAAAGCAATCAAAGTGAATAGAAATCATATTTGT 777
** * *** * * * * **
consensus_5456#1 TCGTGGTTGAAATCAATGGCGGCCATGTGCGCCTGTTCGCCGATCAATGCTGGGTGCAGG 687
consensus_5456#2 ------------------------------------------------------------
consensus_5456#0 TGATGTTTGTTGTTAAGCGAAAGTAGGCACGGGCGCTCGCGAAGAGAAGGACGATAGTTT 837
consensus_5456#1 AAAGCATTGACAGGATAGGCACGGCTTAAGAGGAGCGTTTCGAGCCAACTAGCAAGCG-- 745
consensus_5456#2 ------------------------------------------------------------
consensus_5456#0 TTTTTATAAGAAAAAAAAACAAAAAAAAAACGGGACTGGCACAGCACAGAGGGAAGCGAG 897
consensus_5456#1 TTATCGTTTGACCTTTCCTTTCTCAAATACAGCGGTTCTGTTTGCAGTGCTATTTGGTTA 805
consensus_5456#2 ------------------------------------------------------------
consensus_5456#0 TTAGCGGTGAAGCGCGTGTTTGTGTGCATCATTTAATCTCATAGCCGCTCCGTTCAGCAA 957
consensus_5456#1 GCTGGC--GCGTTTATTTTTAGTTGAATTTATTTCCATAC--CTAACAATGGCATATT-- 859
consensus_5456#2 ------------------------------------------------------------
consensus_5456#0 GCTAATCAACGTCAGTGTATAGTTTTAGTACGTTTCACTCGTTTGGCAACCTTTTCTTCT 1017
consensus_5456#1 ------------------------------------------------------------
consensus_5456#2 ------------------------------------------------------------
consensus_5456#0 TTTTTTTTTTTAATCGGTGCGAACGCGTCCCCTGGGTCGTGATTGTTTATCGTTTATGAT 1077
consensus_5456#1 ------------------------------------------------------------
consensus_5456#2 ------------------------------------------------------------
consensus_5456#0 TAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTTGTT 1137
consensus_5456#1 ------------------------------------------------------------
consensus_5456#2 ------------------------------------------------------------
consensus_5456#0 TGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGT 1197
consensus_5456#1 ------------------------------------------------------------
consensus_5456#2 ------------------------------------------------------------
consensus_5456#0 GTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGA 1257
consensus_5456#1 --------------------------------------------
consensus_5456#2 --------------------------------------------
consensus_5456#0 GAGGTCCATCCACGCCTGCAGCATTGAAACAAACGGATAGAAAG 1301
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||