cluster # 5459

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5459 cluster # 5459 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5459#0 length = 1285 sequences # 3

consensus_5459#1 length = 286 sequences # 1

consensusID : consensus_5459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1285
fasta sequence

                              [CCGCCAGTCGAGTAGTAAGCATCAGGACGGTACAGCTCTGAGCAAAAGCACAAACCACCGATCCGCGAAGGCAGCGTACATTCTTGGTTGAAGTTTTTTTTTCTCTTGCTACTGCGTGCCCTTGCACCGAAAAGTGCGTAGTGAAGACGGTCAGGGGTGTAGCCTGCGCGAACGGAGGTGCACTTTTTGCTAAATAAAAGCGTTAAGATTCTATAGTTTCGTGAGATTGGATTGGAAAAGGATAGTGAGAGACACTCGAAGTCGTGTTATAAATTTAGAAAAGGATATTGAAAAAGTACATTTTTGGCTGCCGCTCGCTGGACACACTACAGCCCTGGTCCGCGCGGCAAGGGAGAAAGTGACAGCACGGGCGGAGCAGAACAGCAGCGGCGCAAGCGAGAAGTAACTAGCCCGTGTATACTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGGAATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCTAGTGAACGATTTTAGTGAGCAAAGTT--------TGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGTGCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTATGGAGACGGCGGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAGCCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGCAGCAACCGTCGGTGCGAATGGTTGCGCCAGCCGCCACTGCGAAACGATGGGGGCGCTAGTGTGGCTGCTGGCGAAGATGGAGGACGGCGACCGTTGGGACGATGATGGTCGCCGTAATGGGGGGGTTTGGTTTCGCGCCAGGATTCAAACGAACTGTCGGAAGCTAACCGTGATGGCAAGGGGCACCCCGGTGTGGGTAGCAATCAGGGCAATGGTACGGGGGTGCCAATGGCGACAGCGGCCACCATGAGCAATCGGACTGGGGAGGGGCGCTGCCGGCGCAAAAACCGCCGTCGCAAGTCGAACCGCGGCAAATCGAGCTCGAACCGCCCGTACAGCAAGACCCAGTGGAAGTTTCAGTGTCCTCCCGGGGGGCAACCGGGTGGTGGTGGGTGGTGGAGGCCGCCCGGGTGGTGGTGCGGAGAGCAATTGCAACAAACGGCGCCATCTCTACTCGGTGGCGGCCTCGCGCCGCATCACACCGTTTCCTGAAGTCCGATCAGCC]

[+] EMBL BM610098             [CCGCCAGTCGAGTAGTAAGCATCAGGACGGTACAGCTCTGAGCAAAAGCACAAACCACCGATCCGCGAAGGCAGCGTACATTCTTGGTTGAAGTTTTTTTTTCTCTTGCTACTGCGTGCCCTTGCACCGAAAAGTGCGTAGTGAAGACGGTCAGGGGTGTAGCCTGCGCGAACGGAGGTGCACTTTTTGCTAAATAAAAGCGTTAAGATTCTATAGTTTCGTGAGATTGGATTGGAAAAGGATAGTGAGAGACACTCGAAGTCGTGTTATAAATTTAGAAAAGGATATTGAAAAAGTACATTTTTGGCTGCCGCTCGCTGGACACACTACAGCCCTGGTCCGCGCGGCAAGGGAGAAAGTGACAGCACGGGCGGAGCAGAACAGCAGCGGCGCAAGCGAGAAGTAACTAGCCCGTGTATACTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGGAATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCTAGTGAACGATTTTAGTGAGCAAAGTT        TGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGTGCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTATGGAGACGGCGGAAAGCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM575549             [                                                                                                                                                                                                                                                                                                                                                                                                             ccGAAGCAACTAGCCCGTGTATACTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGGAATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCTAGTGAACGATTTTAGTGAGCAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGTGCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTATGGAGACGGCGGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAGCCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGCAGCAACCGTCGGTGCGAATGGTTGCGCCAGCCGCCACTGCGAAACGATGGGGGCGCTAGTGTGGCTGCTGGCGAAGATGGAGGACGGCGACCGTTGGGACGATGATGGTCGCCGTAATGGGGGGGTTTGGTTTCGCGCCAGGATTCA                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM630528             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAGCCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGCAGCAACCGTCGGTGCG ATGGTTGCGCCAGCCGCCACTGCG AACGATGGGGGCGCTAGTGTGGCTGCTGGCGAAGATGGAGGACGGCGACCGTT GGACGATGATGGTCGTCGTA  GTGGCGGTTTGGTTTCGCGCCAGGATTCAAACGAACTGTCGGAAGCTAACCGTGATGGCAAGGGGCACCCCGGTGTGGGTAGCAATCAGGGCAATGGTACGGGGGTGCCAATGGCGACAGCGGCCACCATGAGCAATCGGACTGGGGAGGGGCGCTGCCGGCGCAAAAACCGCCGTCGCAAGTCGAACCGCGGCAAATCGAGCTCGAACCGCCCGTACAGCAAGACCCAGTGGAAGTTTCAGTGTCCTCCCGGGGGGCAACCGGGTGGTGGTGGGTGGTGGAGGCCGCCCGGGTGGTGGTGCGGAGAGCAATTGCAACAAACGGCGCCATCTCTACTCGGTGGCGGCCTCGCGCCGCATCACACCGTTTCCTGAAGTCCGATCAGCC]




>consensus_5459#0
CCGCCAGTCGAGTAGTAAGCATCAGGACGGTACAGCTCTGAGCAAAAGCACAAACCACCG
ATCCGCGAAGGCAGCGTACATTCTTGGTTGAAGTTTTTTTTTCTCTTGCTACTGCGTGCC
CTTGCACCGAAAAGTGCGTAGTGAAGACGGTCAGGGGTGTAGCCTGCGCGAACGGAGGTG
CACTTTTTGCTAAATAAAAGCGTTAAGATTCTATAGTTTCGTGAGATTGGATTGGAAAAG
GATAGTGAGAGACACTCGAAGTCGTGTTATAAATTTAGAAAAGGATATTGAAAAAGTACA
TTTTTGGCTGCCGCTCGCTGGACACACTACAGCCCTGGTCCGCGCGGCAAGGGAGAAAGT
GACAGCACGGGCGGAGCAGAACAGCAGCGGCGCAAGCGAGAAGTAACTAGCCCGTGTATA
CTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGG
AATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCT
AGTGAACGATTTTAGTGAGCAAAGTTTGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGT
GCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTAT
GGAGACGGCGGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAG
CCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGC
AGCAACCGTCGGTGCGAATGGTTGCGCCAGCCGCCACTGCGAAACGATGGGGGCGCTAGT
GTGGCTGCTGGCGAAGATGGAGGACGGCGACCGTTGGGACGATGATGGTCGCCGTAATGG
GGGGGTTTGGTTTCGCGCCAGGATTCAAACGAACTGTCGGAAGCTAACCGTGATGGCAAG
GGGCACCCCGGTGTGGGTAGCAATCAGGGCAATGGTACGGGGGTGCCAATGGCGACAGCG
GCCACCATGAGCAATCGGACTGGGGAGGGGCGCTGCCGGCGCAAAAACCGCCGTCGCAAG
TCGAACCGCGGCAAATCGAGCTCGAACCGCCCGTACAGCAAGACCCAGTGGAAGTTTCAG
TGTCCTCCCGGGGGGCAACCGGGTGGTGGTGGGTGGTGGAGGCCGCCCGGGTGGTGGTGC
GGAGAGCAATTGCAACAAACGGCGCCATCTCTACTCGGTGGCGGCCTCGCGCCGCATCAC
ACCGTTTCCTGAAGTCCGATCAGCC

consensusID : consensus_5459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [CCGCGGACGCGTGGGCGGCCTCGCGCCGCATCACACCGTTCCTGAAGTCCGATCAGCCACCGCTAGTGCCATACAACACCAACCGCTTCCTGATGGAGGACCACATGCCGCAAGTGCTCACGCCGTCAGAGGATGAAGAGGACTTCCTGACGAAGGAGTTCTCCAGCGTGTACGAGCGGGAGCGTTTCGAGCGGCTGGAAAGCCTCAGCCACCCGGACCTCGTGCAAGAGTACATAAAGCTCGCGATCGAGTACGAGCAGCTGGTGCGCCGCAACGGCGTCACCGG]

[+] EMBL BM585317             [CCGCGGACGCGTGGGCGGCCTCGCGCCGCATCACACCGTTCCTGAAGTCCGATCAGCCACCGCTAGTGCCATACAACACCAACCGCTTCCTGATGGAGGACCACATGCCGCAAGTGCTCACGCCGTCAGAGGATGAAGAGGACTTCCTGACGAAGGAGTTCTCCAGCGTGTACGAGCGGGAGCGTTTCGAGCGGCTGGAAAGCCTCAGCCACCCGGACCTCGTGCAAGAGTACATAAAGCTCGCGATCGAGTACGAGCAGCTGGTGCGCCGCAACGGCGTCACCGG]




>consensus_5459#1
CCGCGGACGCGTGGGCGGCCTCGCGCCGCATCACACCGTTCCTGAAGTCCGATCAGCCAC
CGCTAGTGCCATACAACACCAACCGCTTCCTGATGGAGGACCACATGCCGCAAGTGCTCA
CGCCGTCAGAGGATGAAGAGGACTTCCTGACGAAGGAGTTCTCCAGCGTGTACGAGCGGG
AGCGTTTCGAGCGGCTGGAAAGCCTCAGCCACCCGGACCTCGTGCAAGAGTACATAAAGC
TCGCGATCGAGTACGAGCAGCTGGTGCGCCGCAACGGCGTCACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5459#0      CCGCCAGTCGAGTAGTAAGCATCAGGACGGTACAGCTCTGAGCAAAAGCACAAACCACCG 60
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      ATCCGCGAAGGCAGCGTACATTCTTGGTTGAAGTTTTTTTTTCTCTTGCTACTGCGTGCC 120
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      CTTGCACCGAAAAGTGCGTAGTGAAGACGGTCAGGGGTGTAGCCTGCGCGAACGGAGGTG 180
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      CACTTTTTGCTAAATAAAAGCGTTAAGATTCTATAGTTTCGTGAGATTGGATTGGAAAAG 240
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      GATAGTGAGAGACACTCGAAGTCGTGTTATAAATTTAGAAAAGGATATTGAAAAAGTACA 300
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      TTTTTGGCTGCCGCTCGCTGGACACACTACAGCCCTGGTCCGCGCGGCAAGGGAGAAAGT 360
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      GACAGCACGGGCGGAGCAGAACAGCAGCGGCGCAAGCGAGAAGTAACTAGCCCGTGTATA 420
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      CTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGG 480
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      AATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCT 540
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      AGTGAACGATTTTAGTGAGCAAAGTTTGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGT 600
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      GCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTAT 660
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      GGAGACGGCGGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAG 720
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      CCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGC 780
consensus_5459#1      -----CCGCGGACGCGTG-GGCGGCCTCGCGCCGCATCACACCGTTCCTGAAGTCCGATC 54
                           ****  *  ***  **  **  ** **** **     **   *        *  *

consensus_5459#0      AGCAACCGTCGGTGCGAATGGTTGCGCCAGCCGCCACTGCGAAACGATGGGGGCGCTAGT 840
consensus_5459#1      AGCCACCGCTAGTGCCA-----TACAACACCAACCGCTTCCTGATGGAGGACCACATGCC 109
                      *** ****   **** *     * *  ** *  ** ** *   * *  **      *   

consensus_5459#0      GTGGCTGCTGGCGAAGATGGAGGACGGCGAC--CGTTGGGACGATGATGGTCGCCGTAAT 898
consensus_5459#1      GCAAGTGCTCACGCCGTCAGAGGATGAAGAGGACTTCCTGACGAAGGAGTTCTCCAGCGT 169
                      *    ****  **  *   ***** *  **   * *   ***** *  * ** **    *

consensus_5459#0      GGGGGGGTTTGGTTTCGCGCCAGGATTCAAACGAACTGTCGGAAGCTAACCGTGATGGCA 958
consensus_5459#1      GTACGAG--CGGGAGCGTTTCGAGCGGCTGGAAAGCCTCAGCCACCCGGACCTCGTGCAA 227
                      *   * *   **   **   *  *   *     * *    *  * *    * *  **  *

consensus_5459#0      AGGGGCACCCCGGTGTGGGTAGCAATCAGGGCAATGGTACGGGGGTGCCAATGGCGACAG 1018
consensus_5459#1      GAGTACATAAAGCTCGCGATCGAGTACGAGCAGCTGGTGCGCCG----CAACGGCGTCAC 283
                        *  **    * *   * * *    *  *    **** **  *    *** **** ** 

consensus_5459#0      CGGCCACCATGAGCAATCGGACTGGGGAGGGGCGCTGCCGGCGCAAAAACCGCCGTCGCA 1078
consensus_5459#1      CGG--------------------------------------------------------- 286
                      ***                                                         

consensus_5459#0      AGTCGAACCGCGGCAAATCGAGCTCGAACCGCCCGTACAGCAAGACCCAGTGGAAGTTTC 1138
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      AGTGTCCTCCCGGGGGGCAACCGGGTGGTGGTGGGTGGTGGAGGCCGCCCGGGTGGTGGT 1198
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      GCGGAGAGCAATTGCAACAAACGGCGCCATCTCTACTCGGTGGCGGCCTCGCGCCGCATC 1258
consensus_5459#1      ------------------------------------------------------------
                                                                                  

consensus_5459#0      ACACCGTTTCCTGAAGTCCGATCAGCC 1285
consensus_5459#1      ---------------------------