cluster # 5463

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Anopheles gambiae
cluster # 5463 cluster # 5463 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5463#0 length = 802 sequences # 2

consensus_5463#1 length = 634 sequences # 1
consensus_5463#2 length = 393 sequences # 1

consensusID : consensus_5463#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 802
fasta sequence

                              [CGACCCACGCGTCCGACACACTACGCAAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCGAGGATGTATTCGATTCCTCGCTTACCACGGAGGATGTGGAACGCTTCACCGGTGTACAGATCCCGGCCGATGACAAAGTACCTTACGTGATCTGCACCGACTGTAGAAGTAGTTTAAGAAAATCAGCTGCCTTTCGGAAGTCTTGCGTACGCAATGATCGACTCTATTGCCAATTGTTCTCGGAATTGATCGTCGAGATTCGGAACGAAACGAATCGAAAGCAACCTGCAACGATTGTTCATCACACACCCGATGATGATATCGATGTTACGGTTTTCACCCACCCCGTTCATCCAAAGCAACTGTCTGCTTCTGAGAACAAGCAGCTAGTTAGCGCTGATGAAAGAGATGAAAGAGAAAGCATTGAAACGGAAGCTACCCCTTTAAAATCAACACTCTCGTCTCCTCGCCCGGAACCGATGGCAATTGACGAAACAAGCAACCTGCAGGACCCACCAATACGCACTAGGAAACGACGCAAAAAGTATGCGAATCGTCATGTGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTA]

[+] EMBL BM588588             [CGACCCACGCGTCCGACACACTACGCAAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCGAGGATGTATTCGATTCCTCGCTTACCACGGAGGATGTGGAACGCTTCACCGGTGTACAGATCCCGGCCGATGACAAAGTACCTTACGTGATCTGCACCGACTGTAGAAGTAGTTTAAGAAAATCAGCTGCCTTTCGGAAGTCTTGCGTACGCAATGATCGACTCTATTGCCAATTGTTCTCGGAATTGATCGTCGAGATTCGGAACGAAACGAATCGAAAGCAACCTGCAACGATTGTTCATCACACACCCGATGATGATATCGATGTTACGGTTTTCACCCACCCCGTTCATCCAAAGCAACTGTCTGCTTCTGAGAACAAGCAGCTAGTTAGCGCTGATGAAAGAGATGAAAGAGAAAGCATTGAAACGGAAGCTACCCCTTTAAAATCAACACTCTCGTCTCCTCGCCCGGAACCGATGGCAATTGACGAAACAAGCAACCTGCAGGACCCACCAATACGCACTAGGAAACGACGCAAAAAGTATGCGAATCGTCATGT                                                                                                                                                                                                                     ]
[+] EMBL BX607079             [                    CTACGCAAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCGAGGATGTATTCGATTCCTCTCTTACCACGGAGGATGTGGAACGCTTCACCGGTGTACAGATCCCGGCTGATGACAAAGTACCTTACGTGATCTGCACCGATTGTAGAAGTAGTTTAAGAAAATCAGCTGCCTTTCGGAAGTCTTGCGTACGCAACGATCGACTCTATTGCCAATTGTTCTCGGAATTGATCGTCGAGATTCGGAACGAAACGCATCGAAAGCAACCTGCAACGATTGTTCATCACACACCCGATGATGATATCGATGTTACGGTTTTCACCCACCCCGTTCATCCAAAGCAACTGTCTGCTTCTGAGAACAAGCAGCTAGTTAGCGCTGATGAAAGAGAT  TTG GAAAGCATTGAAACAGAAGCTACCCTTTTAAAATCAACACTCTCGTCTCCTCACCCGGAACCGATGGCAATTGACGAAACAAGCAACCTTCAGGACCCACCAATACGCACTAGGAAACGACGCAAAAAGTATGCGAATCGTCATGTGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTA]




>consensus_5463#0
CGACCCACGCGTCCGACACACTACGCAAAATAACTAACATTTGTCGGCTTTGTTTGTGCG
AAGAGCTGGACATCCTAGTTCCTGCCGAGGATGTATTCGATTCCTCGCTTACCACGGAGG
ATGTGGAACGCTTCACCGGTGTACAGATCCCGGCCGATGACAAAGTACCTTACGTGATCT
GCACCGACTGTAGAAGTAGTTTAAGAAAATCAGCTGCCTTTCGGAAGTCTTGCGTACGCA
ATGATCGACTCTATTGCCAATTGTTCTCGGAATTGATCGTCGAGATTCGGAACGAAACGA
ATCGAAAGCAACCTGCAACGATTGTTCATCACACACCCGATGATGATATCGATGTTACGG
TTTTCACCCACCCCGTTCATCCAAAGCAACTGTCTGCTTCTGAGAACAAGCAGCTAGTTA
GCGCTGATGAAAGAGATGAAAGAGAAAGCATTGAAACGGAAGCTACCCCTTTAAAATCAA
CACTCTCGTCTCCTCGCCCGGAACCGATGGCAATTGACGAAACAAGCAACCTGCAGGACC
CACCAATACGCACTAGGAAACGACGCAAAAAGTATGCGAATCGTCATGTGGAATACCTGT
GTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAG
AAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGC
GCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAG
GATTCAAGCATCATAACAGCTA

consensusID : consensus_5463#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CCGCCCACGCGTCCGGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTACAATGCTCATATGCGTGGCGTGCATAATGTTGGGGAAAAATACAAATGCAAGATATGCTACAAAGAGTTCAACAGTACACGTAGCATACAGGAACATACCAGGCGTCGGCATAGTATCGAAACTAAATTTGAATGCAAGGATTGCAGTAAGCGGTTTAAGTGCGGAAGGTCGCTGTATATACACAAACGAGTACATTCCGACAACCGGCCGTATGCTTGCAGCCACTGTCCGAAACGGTTCAAGAGCAGCTTCGGCCGCAATACGCATCAACTCACCCACACGGGCATTATATTTTCCTGCCAGCATTGTGATAAGTCCTATCGGTACAAGGCTCAACTTAACATGCACATGCGAAAACTTCACCCGGAGTTGTTTGCCGAAAACACGGACGGATCTGGTGGACCG]

[+] EMBL BM575956             [CCGCCCACGCGTCCGGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTACAATGCTCATATGCGTGGCGTGCATAATGTTGGGGAAAAATACAAATGCAAGATATGCTACAAAGAGTTCAACAGTACACGTAGCATACAGGAACATACCAGGCGTCGGCATAGTATCGAAACTAAATTTGAATGCAAGGATTGCAGTAAGCGGTTTAAGTGCGGAAGGTCGCTGTATATACACAAACGAGTACATTCCGACAACCGGCCGTATGCTTGCAGCCACTGTCCGAAACGGTTCAAGAGCAGCTTCGGCCGCAATACGCATCAACTCACCCACACGGGCATTATATTTTCCTGCCAGCATTGTGATAAGTCCTATCGGTACAAGGCTCAACTTAACATGCACATGCGAAAACTTCACCCGGAGTTGTTTGCCGAAAACACGGACGGATCTGGTGGACCG]




>consensus_5463#1
CCGCCCACGCGTCCGGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAA
ACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACA
GATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCAT
TAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTACAATGCTCATAT
GCGTGGCGTGCATAATGTTGGGGAAAAATACAAATGCAAGATATGCTACAAAGAGTTCAA
CAGTACACGTAGCATACAGGAACATACCAGGCGTCGGCATAGTATCGAAACTAAATTTGA
ATGCAAGGATTGCAGTAAGCGGTTTAAGTGCGGAAGGTCGCTGTATATACACAAACGAGT
ACATTCCGACAACCGGCCGTATGCTTGCAGCCACTGTCCGAAACGGTTCAAGAGCAGCTT
CGGCCGCAATACGCATCAACTCACCCACACGGGCATTATATTTTCCTGCCAGCATTGTGA
TAAGTCCTATCGGTACAAGGCTCAACTTAACATGCACATGCGAAAACTTCACCCGGAGTT
GTTTGCCGAAAACACGGACGGATCTGGTGGACCG

consensusID : consensus_5463#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [ACACTTTACGTGAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCAAGAATGTATTTGATTCTTTGCTTACCTCGGAGGATGTGGAACATTTTACCAGCATACAGATCCCAACCGATGACAACGTACCTTACGTGATCTGCACCGATTGTAGAAATGGTTTAAGAAAATCAGTTGCCTTTCGGAAGTCTTGCGTACGCAACGATCGAATCTATCAGCAAATGTTCTCACAATTCATAGCCGAGACTAGGCACGAAACGGATCGAAAGCTACCGCCTGCCACTGTTCACCTCAAATCGGAAGATGATTTCGATGAATGCGAGCATGAATTTCTCGATGAAATTGAAAATGTAAACTGCGATGATACTG]

[+] EMBL BX606425             [ACACTTTACGTGAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCAAGAATGTATTTGATTCTTTGCTTACCTCGGAGGATGTGGAACATTTTACCAGCATACAGATCCCAACCGATGACAACGTACCTTACGTGATCTGCACCGATTGTAGAAATGGTTTAAGAAAATCAGTTGCCTTTCGGAAGTCTTGCGTACGCAACGATCGAATCTATCAGCAAATGTTCTCACAATTCATAGCCGAGACTAGGCACGAAACGGATCGAAAGCTACCGCCTGCCACTGTTCACCTCAAATCGGAAGATGATTTCGATGAATGCGAGCATGAATTTCTCGATGAAATTGAAAATGTAAACTGCGATGATACTG]




>consensus_5463#2
ACACTTTACGTGAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCC
TAGTTCCTGCCAAGAATGTATTTGATTCTTTGCTTACCTCGGAGGATGTGGAACATTTTA
CCAGCATACAGATCCCAACCGATGACAACGTACCTTACGTGATCTGCACCGATTGTAGAA
ATGGTTTAAGAAAATCAGTTGCCTTTCGGAAGTCTTGCGTACGCAACGATCGAATCTATC
AGCAAATGTTCTCACAATTCATAGCCGAGACTAGGCACGAAACGGATCGAAAGCTACCGC
CTGCCACTGTTCACCTCAAATCGGAAGATGATTTCGATGAATGCGAGCATGAATTTCTCG
ATGAAATTGAAAATGTAAACTGCGATGATACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5463#0      CGACCCACGCGTCCGACACACTACGCAAAA--TAACTAACATTTGTCGGCTTTGTTTGTG 58
consensus_5463#2      ---------------ACACTTTACGTGAAA--TAACTAACATTTGTCGGCTTTGTTTGTG 43
consensus_5463#1      ---------CCGCCCACGCGTCCGGGAATACCTGTGTGACATATGT-GGCCAAACGACTA 50
                                     ** *     *  * *  *   * **** *** ***        * 

consensus_5463#0      CGAAGAGCTGGACATCCTAGTTCCTGC-CGAGGATGTATTC--GATTCCTCGCTTACCAC 115
consensus_5463#2      CGAAGAGCTGGACATCCTAGTTCCTGC-CAAGAATGTATTT--GATTCTTTGCTTACCTC 100
consensus_5463#1      CCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATT 110
                      * **   *     *  * ** *   ** *  * * * * *    ** * * **   *   

consensus_5463#0      GGAGGATGTGGA------ACGCTTCA---CCGGTGTACAGATCCCGGCCGATGACAAAGT 166
consensus_5463#2      GGAGGATGTGGA------ACATTTTA---CCAGCATACAGATCCCAACCGATGACAACGT 151
consensus_5463#1      GTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGC 170
                      *   ***   **      **   *     *  *    *     *    *  **   * * 

consensus_5463#0      ACCTTACG--TGATCTGCACCGACTGTAG---AAGTAGTTTAAGAAA---ATCAGCTGCC 218
consensus_5463#2      ACCTTACG--TGATCTGCACCGATTGTAG---AAATGGTTTAAGAAA---ATCAGTTGCC 203
consensus_5463#1      AGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTACA 230
                      * ** *    * *   *  *  * ***     **    ** *** *    * *** * * 

consensus_5463#0      TT--TCGGAAGTCTTGCGTACGCAATGATCGACTCTATTGCCAATTGTT---CTCGGAAT 273
consensus_5463#2      TT--TCGGAAGTCTTGCGTACGCAACGATCGAATCTATCAGCAAATGTT---CTCACAAT 258
consensus_5463#1      ATGCTCATATGCGTGGCGTGCATAATGTTGGGGAAAAATA-CAAATGCAAGATATGCTAC 289
                       *  **  * *  * **** *  ** * * *     *    *** **           * 

consensus_5463#0      TGATCGTCGAGATTCGGAACGAAACGAATCGAAAGCAACCTGCAACGATTGTTCATCACA 333
consensus_5463#2      TCATAGCCGAGACTAGGCACGAAACGGATCGAAAGCTACCGCCTGCCACTGTTCACCTCA 318
consensus_5463#1      AAAGAGTTCA-ACAGTACACGTAGCATACAGGAACATACCAGGCGTCGGCATA-GTATCG 347
                        *  *   * *      *** * *  *  * **   ***           *      * 

consensus_5463#0      CACCCGATGATGATATCGATGT-TACGGTTT-TCACCCACCCCGTTCATCCAAAGCAACT 391
consensus_5463#2      AATCGGAAGATGATTTCGATGAATGCGAGCA-TGAATTTCTCGATGAAATTGAAAATGTA 377
consensus_5463#1      AAACTAAATTTGAATGCAAGGATTGCAGTAAGCGGTTTAAGTGCGGAAGGTCGCTGTATA 407
                       * *  *   ***   * * *  * *                     *            

consensus_5463#0      GTCTGCTTCTGAGAACAAGCAGCTAGTTAGCGCTGATGAAAGAGATGAAAGAGAAAGCAT 451
consensus_5463#2      AACTGCGA-TGATACTG------------------------------------------- 393
consensus_5463#1      TAC-ACAAACGAGTACATTCCGACAACCGGCCGTATGCTTGCAGCCACTGTCCGAAACGG 466
                        *  *    **                                                

consensus_5463#0      TGAAACGGAAGCTACCCCTTTAAAATCAACACTCTCGTCTCCTCGCCCGGAACCGATGGC 511
consensus_5463#2      ------------------------------------------------------------
consensus_5463#1      TTCAAGAGCAGCTTCGGCCGCAATACGCATCAACTCACCCACACGGGCATTATATTTTCC 526
                                                                                  

consensus_5463#0      AATTGACGAAACAAGCAACCTGCAGGACCCACCAATACGCACTAGGAAACGACGCAAAAA 571
consensus_5463#2      ------------------------------------------------------------
consensus_5463#1      TGCCAGCATTGTGATAAGTCCTATCGGTACAAGGCTCAACTTAACATGCACATGCGAAAA 586
                                                                                  

consensus_5463#0      GTATGCGAATCGTCATGTGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTA 631
consensus_5463#2      ------------------------------------------------------------
consensus_5463#1      CTTCACCCGGAGTTGTTTGCCGAAAACACG-GACGGATCTGGTGGACCG----------- 634
                                                                                  

consensus_5463#0      CAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGAT 691
consensus_5463#2      ------------------------------------------------------------
consensus_5463#1      ------------------------------------------------------------
                                                                                  

consensus_5463#0      ACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGAT 751
consensus_5463#2      ------------------------------------------------------------
consensus_5463#1      ------------------------------------------------------------
                                                                                  

consensus_5463#0      CATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTA 802
consensus_5463#2      ---------------------------------------------------
consensus_5463#1      ---------------------------------------------------