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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1443 fasta sequence
[CCGCGGACGCGTGGGCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACAT-GATGCTGGGTTTGACGCATCCAAT-GTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGACGACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATTGCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCCGTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTCACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGACAGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGCCGTGTACTGGGACTGAGTATGTC]
[+] EMBL BM576802 [CCGCGGACGCGTGGGCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACATGGATGCTGGGTTTGACGCATCCAATAGTCG ]
[+] EMBL BM633717 [ ccgGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACAT GATGCTGGGTTTGACGCATCCAAT GTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAA ]
[+] EMBL BX624452 [ GTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAGCATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCCCTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGCCAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGTACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATCCTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGACGACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATTGCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCCGTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTCACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGACAGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGCCGTGTACTGGGACTGAGTATGTC]
consensusID : consensus_5474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCTCGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGA]
[+] EMBL BM636389 [CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCTCGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5474#0 CCGCGGACGCGTGGG-----------CGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTAT 49
consensus_5474#1 CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTAT 60
*************** **********************************
consensus_5474#0 TATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCC 109
consensus_5474#1 TATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCC 120
************************************************************
consensus_5474#0 TTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGC 169
consensus_5474#1 TTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGC 180
************************************************************
consensus_5474#0 CCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGC 229
consensus_5474#1 CCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGC 240
************************************************************
consensus_5474#0 CATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAA 289
consensus_5474#1 CATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAA 300
************************************************************
consensus_5474#0 ATTACGATCCCCATCGATCCATGGGCAACAG----------------------------- 320
consensus_5474#1 ATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCT 360
*******************************
consensus_5474#0 ----------------------------------------ATTTCACGAAAATCATCTTC 340
consensus_5474#1 CGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTC 420
********************
consensus_5474#0 GAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGT 400
consensus_5474#1 GAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGT 480
************************************************************
consensus_5474#0 GCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCG 460
consensus_5474#1 GCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCG 540
************************************************************
consensus_5474#0 GAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCAC 520
consensus_5474#1 GAGGGATTCGA------------------------------------------------- 551
***********
consensus_5474#0 CAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGAT 580
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 TTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACATGATGCTGGGTTTGACGCAT 640
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 CCAATGTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTT 700
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 TCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAG 760
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 TACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTC 820
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 ACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATC 880
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 AAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAG 940
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 GGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATG 1000
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 CTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGAC 1060
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 ACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGAC 1120
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 GACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATT 1180
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 GCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCC 1240
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 GTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTC 1300
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 ACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGAC 1360
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 AGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGC 1420
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 CGTGTACTGGGACTGAGTATGTC 1443
consensus_5474#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||