cluster # 5484

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Anopheles gambiae
cluster # 5484 cluster # 5484 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5484#0 length = 663 sequences # 3

consensus_5484#1 length = 642 sequences # 1

consensusID : consensus_5484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 663
fasta sequence

                              [CCGCATCTCTCGACTCGCGTTAGATGCGCGCAGCACCACCATGTGTTTGTTAGTTCGCTGGGGAATGTTCTTACG-GT-CGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTAATGCGTTGCTG-TGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACGCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGCTTATGGTGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTT]

[+] EMBL BM577224             [CCGCATCTCTCGACTCGCGTTAGATGCGCGCAGCACCACCATGTGTTTGTTAGTTCGCTGGGGAATGTTCTTACG GT CGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTAATGCGTTGCTG TGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACGCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCGCGCTTGCGCTC                                                              ]
[+] EMBL BM578093             [                                                               ccgGTTCTTACG GT CGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAGGCACAACTATTCTACCGAATGGTATAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACT      CCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCAACCGCGCTTCCCTTCTCTA                                                                                                                                                            ]
[+] EMBL BM592161             [                                                                  ccgcccACGCGTCCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTAATGCGTTGCTG TGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAG TTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACGCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGCTTATGGTGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTT]




>consensus_5484#0
CCGCATCTCTCGACTCGCGTTAGATGCGCGCAGCACCACCATGTGTTTGTTAGTTCGCTG
GGGAATGTTCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGC
CGCTTTGAAGGGCCATTAATGCGTTGCTGTGTGTTGAACGCGCTAATTCAGTGCGCGTCC
GTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTC
CCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAACAACACTCT
TGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGA
AAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCA
TTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAG
ATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTTGTGTTGTGTGCTTGAAA
ACAGCCGTGTGTTGACGCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCGCGCTTGCGCT
CATAACCTCGCTTATGGTGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAG
TTT

consensusID : consensus_5484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CCGCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTATAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAGGCACAACTATTCTACCGAATGGTATAAAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCGACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACTTGACGCGCCTGCCTCGTGCGTGTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGCTTATGGGGGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTTTTGTGTTAAGACGAAAACACTGTGCCGTGGTGTGTGAATGTGCCGTGGA]

[+] EMBL BM607749             [CCGCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTATAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAGGCACAACTATTCTACCGAATGGTATAAAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCGACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACTTGACGCGCCTGCCTCGTGCGTGTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGCTTATGGGGGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTTTTGTGTTAAGACGAAAACACTGTGCCGTGGTGTGTGAATGTGCCGTGGA]




>consensus_5484#1
CCGCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTT
GAAGGGCCATTATAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTA
TATGGTGTGGTGTGATAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTAT
CGCCAACAGGCACAACTATTCTACCGAATGGTATAAAACAACACTCTTGCTACTACGGCA
TCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACC
CCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAGG
GAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCGACCGCG
CTTCCCTTCTCTAATCTGCTGCGCAGTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGA
CTTGACGCGCCTGCCTCGTGCGTGTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGC
TTATGGGGGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTTTTGTGTT
AAGACGAAAACACTGTGCCGTGGTGTGTGAATGTGCCGTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5484#0      CCGCATCTCTCGACTCGCGTTAGATGCGCGCAGCACCACCATGTGTTTGTTAGTTCGCTG 60
consensus_5484#1      ------------------------------------------------------------
                                                                                  

consensus_5484#0      GGGAATGTTCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGC 120
consensus_5484#1      ------CCGCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGC 54
                               ***************************************************

consensus_5484#0      CGCTTTGAAGGGCCATTA--ATGCGTTGCTG-TGTGTTGAACGCGCTAATTCAGTGCGCG 177
consensus_5484#1      CGCTTTGAAGGGCCATTATAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCG 114
                      ******************  *** ******* ****************************

consensus_5484#0      TCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCT 237
consensus_5484#1      TCCGTATATGGTGTGGTGTGATAACAAC------------AATCCATCCGTGGATTAGCT 162
                      ****************************            ********************

consensus_5484#0      TTCCCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAA--CAAC 295
consensus_5484#1      TTCCCTAACGCGTTTTATCGCCAACAGGCACAACTATTCTACCGAATGGTATAAAACAAC 222
                      **************************  **************************  ****

consensus_5484#0      ACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACG 355
consensus_5484#1      ACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACG 282
                      ************************************************************

consensus_5484#0      GAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCA 415
consensus_5484#1      GAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCA 342
                      ************************************************************

consensus_5484#0      TCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGT 475
consensus_5484#1      TCGCATTGTGCAAAAA-GGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGT 401
                      **************** *******************************************

consensus_5484#0      AGAAGATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTTGTGTTGTGTGCT 535
consensus_5484#1      AGAAGATTCAGCGACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTT-GTGTTGTGTGCT 460
                      ************ ********************************** ************

consensus_5484#0      TGAAAACAGCCGTGTGTTGAC-----GCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCG 590
consensus_5484#1      TGAAAACAGCCGTGTGTTGACTTGACGCGCCTGCCTCGTGCGTGTTTTTTT-GTTGATCG 519
                      *********************     ************************* ********

consensus_5484#0      CGCTTGCGCTCATAACCTCGCTTATGGTG-TTGCTTCTGTGCTGCGCTCACTGACTGACA 649
consensus_5484#1      CGCTTGCGCTCATAACCTCGCTTATGGGGGTTGCTTCTGTGCTGCGCTCACTGACTGACA 579
                      *************************** * ******************************

consensus_5484#0      GCTGTCGCCAGTTT---------------------------------------------- 663
consensus_5484#1      GCTGTCGCCAGTTTTTGTGTTAAGACGAAAACACTGTGCCGTGGTGTGTGAATGTGCCGT 639
                      **************                                              

consensus_5484#0      ---
consensus_5484#1      GGA 642