cluster # 5501

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Anopheles gambiae
cluster # 5501 cluster # 5501 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5501#0 length = 745 sequences # 3

consensus_5501#1 length = 285 sequences # 1

consensusID : consensus_5501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 745
fasta sequence

                              [CCGCCCACGCGTCCGGGTTCGACCATGTCACTAGTCCGGTCGCTTTCTGGCCATGGGTGATGCGCCGTGATGCGACTAGAACTATTTATTTCACACCCAATTATTACACTTCCTAAGTAAACGATTATTGCTACGTAGTGTGTTTTATAGATAACAGTGCTGTACAGTGATTGTAAGTGAAATAAAAAACCCGGAACATTCCTTACCGTTTTCTTCTCCCTCAAACAAAGACGCACAGTGACGGTCAAGTGTAGCCGCAAGCGATTAGTGATTATCATGAGCAAACCATGAAGCGGCAGCTAGTTCCTGTGATAGCTGTGGTGCTGCTGGGGTCGCTCGCACTGCTAGCGACGGGACAGGAAGTATGCCCCGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGACTGTTCCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCTTGACCTATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCTGCACTATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCAC-TCACGGGAATGTCTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTCCAACTGGGCGGACATACATCCTAACCAGTTGCTGCTGCCGGCCGGCAATCTGAAAGAGTTGCGCCTCGCCAAGAACCACTTCACCAGCTTCTCCAGCAACGACAA]

[+] EMBL BM578053             [CCGCCCACGCGTCCGGGTTCGACCATGTCACTAGTTCGGTCGCTTTCTGGCCATGGGTGATGCGCCGTGATGCGACTAGAACTATTTATTTCACACCCAATTATTACACTTCCTAAGGAAACGATTATTGCTACGTAGAGTGTTTTATAGATAACAGTGCTGTACAGTGATTGTAAGTGA   AAAAATCCCGGAACATTCTTTGC  TTTTCCTCTCCCTCAAACAAAGACGCACAGGGACGGTCAAGTGTAGCCGCAAGCGATTAGTGATTATCATGAGCAAACCATGAAGCGGGAGCTAGTTCCTGTGATAGCTGTGGTGCTGCTGGGGTCGCTCGCACTGCTAACGACGGGACAGGAAGTATGCCCGGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGGGTGCGTCGACTGTTCCGGGCGTGGCCTAACGGAGCTCCCCGTTTTTGCGGACTTTAATATCGAAATTCT                                                                                                                                                                                                                                                                               ]
[+] EMBL BM608802             [            CCGGGTTCGACCATGTCACTAGTCCGGTCGCTTTCTGGCCATGGGTGATGCGCCGTGATGCGACTAGAACTATTTATTTCACACCCAATTATTACACTTCCTAAGTAAACGATTATTGCTACGTAGTGTGTTTTATAGATAACAGTGCTGTACAGTGATTGTAAGTGAAATAAAAAACCCGGAACATTCCTTACCGTTTTCTTCTCCCTCAAACAAAGACGCACAGTGACGGTCAAGTGTAGCCGCAAGCGATTAGTGATTATCATGAGCAAACCATGAAGCGGCAGCTAGTTCCTGTGATAGCTGTGGTGCTGCTGGGGTCGCTCGCACTGCTAGCGACGGGACAGGAAGTATGCCCCGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGACTGTTCCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCTTGACCTATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCTGCACTATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCAC TCACGGGAATGTCTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTCCAACTGGGCGGACATACATCCTAACCAGTTGCTGCTGCCGGCCGGCAATCTGAAAGAGTTGCGCCTCGCCAAGAACCACTTCACCAGCTTCTCCAGCAACGACAA]
[+] EMBL BM591316             [             ccGGTTCGACCATGTCACTAGTCCGGTCGCTTTCTGGCCATGGGTGATGCGCCGTGATGCGACTAGAACTATTTATTTCACACCCAATTATTACACTTCCTAAGTAAACGATTATTGCTACGTAGTGTGTTTTATAGATAACAGTGCTGTACAGTGATTGTAAGTGAAATAAAAAACCCGGAACATTCCTTACCGTTTTCTTCTCCCTCAAACAAAGACGCACAGTGACGGTCAAGTGTAGCCGCAAGCGATTAGTGATTATCATGAGCAAACCATGAAGCGGCAGCTAGTTCCTGTGATAGCTGTGGTGCTGCTGGGGTCGCTCGCACTGCTAGCGACGGGACAGGAAGTATGCCCCGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGACTGTTCCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCTTGACCTATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCTGCACTATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCACTTCACGGGAATGTCTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTCCAACTGGGCGGACATACATCCTAACCAGTTGCTGCTGCCGGCCGGCAATCTGAAAGAGTTGCGCCTCGCCAAGAACCACTTCACC                    ]




>consensus_5501#0
CCGCCCACGCGTCCGGGTTCGACCATGTCACTAGTCCGGTCGCTTTCTGGCCATGGGTGA
TGCGCCGTGATGCGACTAGAACTATTTATTTCACACCCAATTATTACACTTCCTAAGTAA
ACGATTATTGCTACGTAGTGTGTTTTATAGATAACAGTGCTGTACAGTGATTGTAAGTGA
AATAAAAAACCCGGAACATTCCTTACCGTTTTCTTCTCCCTCAAACAAAGACGCACAGTG
ACGGTCAAGTGTAGCCGCAAGCGATTAGTGATTATCATGAGCAAACCATGAAGCGGCAGC
TAGTTCCTGTGATAGCTGTGGTGCTGCTGGGGTCGCTCGCACTGCTAGCGACGGGACAGG
AAGTATGCCCCGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGACTGTT
CCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCTTGACC
TATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCTGCACT
ATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCACTCACGGGAATGT
CTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTCCAACTGGGCGGACATACATC
CTAACCAGTTGCTGCTGCCGGCCGGCAATCTGAAAGAGTTGCGCCTCGCCAAGAACCACT
TCACCAGCTTCTCCAGCAACGACAA

consensusID : consensus_5501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [CCGCCCACGCGTCCGCGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGACTGTTCCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCTTGACCTATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCTGCACTATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCACTCACGGGAATGTCTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTC]

[+] EMBL BM589527             [CCGCCCACGCGTCCGCGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGACTGTTCCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCTTGACCTATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCTGCACTATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCACTCACGGGAATGTCTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTC]




>consensus_5501#1
CCGCCCACGCGTCCGCGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGA
CTGTTCCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCT
TGACCTATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCT
GCACTATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCACTCACGGG
AATGTCTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5501#0      CCGCCCACGCGTCCGGGTTCGACCATGTCACTAGTCCGGTCGCTTTCTGGCCATGGGTGA 60
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      TGCGCCGTGATGCGACTAGAACTATTTATTTCACACCCAATTATTACACTTCCTAAGTAA 120
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      ACGATTATTGCTACGTAGTGTGTTTTATAGATAACAGTGCTGTACAGTGATTGTAAGTGA 180
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      AATAAAAAACCCGGAACATTCCTTACCGTTTTCTTCTCCCTCAAACAAAGACGCACAGTG 240
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      ACGGTCAAGTGTAGCCGCAAGCGATTAGTGATTATCATGAGCAAACCATGAAGCGGCAGC 300
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      TAGTTCCTGTGATAGCTGTGGTGCTGCTGGGGTCGCTCGCACTGCTAGCGACGGGACAGG 360
consensus_5501#1      --------------------------------------------------------CCGC 4
                                                                              * * 

consensus_5501#0      AAGTATGCCC-CGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGACTGT 419
consensus_5501#1      CCACGCGTCCGCGAGCCGTGCAGTTGCGACTGCGAGGAAAGTATGGCGTGCGTCGACTGT 64
                            * ** *************************************************

consensus_5501#0      TCCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCTTGAC 479
consensus_5501#1      TCCGGGCGTGGCCTAACGGAGCTGCCCGTTTTTGCGGACTTTAATATCGAAATTCTTGAC 124
                      ************************************************************

consensus_5501#0      CTATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCTGCAC 539
consensus_5501#1      CTATCCGACAACCTGTTCACGACGATACCGCCCGAGCTGGCCCAGTTCCCGCGGCTGCAC 184
                      ************************************************************

consensus_5501#0      TATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCACTCACGGGAATG 599
consensus_5501#1      TATCTGGACCTTTCCGCGAATGCTATCACGCAACTACGCGAAGATGCACTCACGGGAATG 244
                      ************************************************************

consensus_5501#0      TCTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTCCAACTGGGCGGACATACAT 659
consensus_5501#1      TCTTCCCTTTCCATACTGATCCTGTCGGAGAATAACATCTC------------------- 285
                      *****************************************                   

consensus_5501#0      CCTAACCAGTTGCTGCTGCCGGCCGGCAATCTGAAAGAGTTGCGCCTCGCCAAGAACCAC 719
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      TTCACCAGCTTCTCCAGCAACGACAA 745
consensus_5501#1      --------------------------