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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 823 fasta sequence
[CCGGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACGCGTCGCACCATACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCCAAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGTATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGTGACTTTCTTTGAGAATTCAAAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCCTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTAATGCGAGAAGCATCAGCAGCAGGAGCAGCTTTGCAACATTGCGGAATGTTATTTCGTCTTCTGCTTACATTACACACGATACGTCGTTTATG-TTTTTTTAGTTACTAGCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCAAAACCAATAGGAGATGCCAGATGTGTGTTTTCCGGATCGTGGAAATCACACACAACCCCCACCCCCTCCCTCATCCCCCTCTCAACACAATAATAGTCCGATTCCCAATAGTTAAGCTCCCGCCAACCTTCCACCTGTCCTGAAATACTAGAAGTTACGCACTTCTACCGTTAAATACAGTCACTTTGCCACCCG]
[+] EMBL BM648318 [CCGGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACGCGTCGCACCATACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCCAAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGTATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGTGACTTTCTTTGAGAATTCAAAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCCTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTAATGCGAGAAGCATCAGCAGCAGGAGCAGCTTTGCAACATTGCGGAATGTTATTTCGTCTTCTGCTTACATTACACACGATACGTCGTTTATGTTTTTTTTAGTTACTAGCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCAAAAC ]
[+] EMBL BX614157 [ AAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCCTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTAATGCGAGAAGCATCAGCAGCAGGAGCAGCTTTGCAACATTGCGGAATGTTATTTCGTCTTCTGCTTACATTACACACGATACGTCGTTTATG TTTTTTTAGTTACTAGCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCA ]
[+] EMBL BM578159 [ ccgG TTTTTTTAGTTACTAGCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCAAAACCAATAGGAGATGCCAGATGTGTGTTTTCCGGATCGTGGAAATCACACACAACCCCCACCCCCTCCCTCATCCCCCTCTCAACACAATAATAGTCCGATTCCCAATAGTTAAGCTCCCGCCAACCTTCCACCTGTCCTGAAATACTAGAAGTTACGCACTTCTACCGTTAAATACAGTCACTTTGCCACCCG]
consensusID : consensus_5502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[GCGAGCGGCCGCACGAGTGCCTGATCTGTGGCATCAGCTTCATCCAGAAGATCAACCTTATCTACCACATCCGCATACACAACGGCGAGCGTCCGTACCGGTGCAACATCTGCCAGAAGTCGTTCATCCAGCAGAGCCATATAAAGAACCATATGAAGGTGCACAAGAAGGACAATCCGCTTGACTGCAGCATGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACGCGTCGCACCACACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCCAAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGTATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGTGACTTTCTTTGAGAATTCAAAAACAAAAAAAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCTTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTA]
[+] EMBL BX628403 [GCGAGCGGCCGCACGAGTGCCTGATCTGTGGCATCAGCTTCATCCAGAAGATCAACCTTATCTACCACATCCGCATACACAACGGCGAGCGTCCGTACCGGTGCAACATCTGCCAGAAGTCGTTCATCCAGCAGAGCCATATAAAGAACCATATGAAGGTGCACAAGAAGGACAATCCGCTTGACTGCAGCATGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACGCGTCGCACCACACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCCAAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGTATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGTGACTTTCTTTGAGAATTCAAAAACAAAAAAAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCTTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5502#0 ------------------------------------------------------------
consensus_5502#1 GCGAGCGGCCGCACGAGTGCCTGATCTGTGGCATCAGCTTCATCCAGAAGATCAACCTTA 60
consensus_5502#0 ------------------------------------------------------------
consensus_5502#1 TCTACCACATCCGCATACACAACGGCGAGCGTCCGTACCGGTGCAACATCTGCCAGAAGT 120
consensus_5502#0 ------------------------------------------------------------
consensus_5502#1 CGTTCATCCAGCAGAGCCATATAAAGAACCATATGAAGGTGCACAAGAAGGACAATCCGC 180
consensus_5502#0 ----------CCGGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACG 50
consensus_5502#1 TTGACTGCAGCATGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACG 240
* ***********************************************
consensus_5502#0 CGTCGCACCATACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCC 110
consensus_5502#1 CGTCGCACCACACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCC 300
********** *************************************************
consensus_5502#0 AAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGT 170
consensus_5502#1 AAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGT 360
************************************************************
consensus_5502#0 ATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGT 230
consensus_5502#1 ATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGT 420
************************************************************
consensus_5502#0 GACTTTCTTTGAGAATTCAAAAA----------ACCTGTCTTTATCCTTTCCCTTTCCTC 280
consensus_5502#1 GACTTTCTTTGAGAATTCAAAAACAAAAAAAAAACCTGTCTTTATCCTTTCCCTTTCCTC 480
*********************** ***************************
consensus_5502#0 ACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCT 340
consensus_5502#1 ACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCT 540
************************************************************
consensus_5502#0 TCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCC 400
consensus_5502#1 TCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCC 600
************************************************************
consensus_5502#0 TATCACTCTCTGGATTCCCCATCCTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTA 460
consensus_5502#1 TATCACTCTCTGGATTCCCCATCTTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTA 660
*********************** ************************************
consensus_5502#0 TAGAGTGCGTGTAATGCGAGAAGCATCAGCAGCAGGAGCAGCTTTGCAACATTGCGGAAT 520
consensus_5502#1 TAGAGTGCGTGTA----------------------------------------------- 673
*************
consensus_5502#0 GTTATTTCGTCTTCTGCTTACATTACACACGATACGTCGTTTATGTTTTTTTAGTTACTA 580
consensus_5502#1 ------------------------------------------------------------
consensus_5502#0 GCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCAAAACCAATAGGA 640
consensus_5502#1 ------------------------------------------------------------
consensus_5502#0 GATGCCAGATGTGTGTTTTCCGGATCGTGGAAATCACACACAACCCCCACCCCCTCCCTC 700
consensus_5502#1 ------------------------------------------------------------
consensus_5502#0 ATCCCCCTCTCAACACAATAATAGTCCGATTCCCAATAGTTAAGCTCCCGCCAACCTTCC 760
consensus_5502#1 ------------------------------------------------------------
consensus_5502#0 ACCTGTCCTGAAATACTAGAAGTTACGCACTTCTACCGTTAAATACAGTCACTTTGCCAC 820
consensus_5502#1 ------------------------------------------------------------
consensus_5502#0 CCG 823
consensus_5502#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||