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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 988 fasta sequence
[CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAAATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGGCCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGAATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAGTGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTGTCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAACAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAAAAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA]
[+] EMBL BM578364 [CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAAATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGT ]
[+] EMBL CNS09JKK [ CAGCTAAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATGAACCTGTTACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCAGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAGGACTACGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGGCCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGAATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAGTGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTGTCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAACAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAAAAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA]
consensusID : consensus_5505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 726 fasta sequence
[AGGCAAGAATTCCGCACGAGTGTCACATTCGGCTTTTGTTTTAANCATTGAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAATTTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTGTTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGANCTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCCCGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGGGCCATTGTTACAGGCTGCTGCTTAGGCTTCGCGTANAGGTAAGGAAGNAGGAATCCANAAGCGATTGCGCTACGTTT]
[+] EMBL BX468214 [AGGCAAGAATTCCGCACGAGTGTCACATTCGGCTTTTGTTTTAANCATTGAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAATTTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTGTTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGANCTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCCCGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGGGCCATTGTTACAGGCTGCTGCTTAGGCTTCGCGTANAGGTAAGGAAGNAGGAATCCANAAGCGATTGCGCTACGTTT]
[+] EMBL BM598335 [ ccgccCACGCGT CCGCATTCGGCTCTTGTTTTAA AATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAA ATACGTTTGTTCAAAAAC TTCGTGCTTGGGCCA TTTCTACCAACCAGAGACGGTTT GCACTAA A CTCACTGCTA GCCTTGCTGCGGAAGGAAAC AAAC TTGAA GGTGCCG AAAAATGCCCGAACGCTGCTG AAAGTGCC GTCC AAGACGAGTACGTAACAAATCGATCCGACCA GGCCATTGTTAC TGCTGCTGCTTA GCTTCGCGTTTTTTTAAGGAAGCA GAATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5505#0 CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAA-ATT 59
consensus_5505#1 ----------AGGCAAGAATTCCGCACGAGTG-TCACATTCGGCTTTTGTTTTAANCATT 49
* * * * * *** * * ************ ********* ***
consensus_5505#0 GAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAAT 119
consensus_5505#1 GAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAAT 109
************ ******* ******************* * ***** ***********
consensus_5505#0 TCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAAT 179
consensus_5505#1 TTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAAT 169
* **********************************************************
consensus_5505#0 CGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGA 239
consensus_5505#1 CGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGA 229
************************ ***************** *****************
consensus_5505#0 AAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGA 299
consensus_5505#1 AAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGA 289
******************************* ****************************
consensus_5505#0 AGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGA 359
consensus_5505#1 AGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGA 349
************************************************************
consensus_5505#0 CGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGA 419
consensus_5505#1 CGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGA 409
************************************************************
consensus_5505#0 GACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAA-TACGTTTG 478
consensus_5505#1 GACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTG 469
***************************************** ******** ********
consensus_5505#0 TTCAAAAAC-TTCGTGCTTGGGCCA-TTTCTACCAACCAGAGACGGTTT-GCACTAA--A 533
consensus_5505#1 TTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGAN 529
********* *************** *********************** *******
consensus_5505#0 CTCACTGCTAG-CCTTGCTGCGGAAGGAAACAAA---CTTGAAGGTGCCGAAAAA-TGCC 588
consensus_5505#1 CTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCC 589
*********** ******************* ** * * ******* **** ****
consensus_5505#0 CGAACGCTGCTGAAA-GTGCC--GTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGG 645
consensus_5505#1 CGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGG 649
*************** ***** * * *** ************* ********** ****
consensus_5505#0 -CCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGA 704
consensus_5505#1 GCCATTGTTA----CAGGCTGCTGCT-----TAGGCTTCGCGTANAGGTAAGGAAGNAGG 700
******** *** ***** * ********* ******** **
consensus_5505#0 ATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAG 764
consensus_5505#1 A----ATCCANAAGCGATTGCG-CTACGTTT----------------------------- 726
* * *** ** * * * * ***
consensus_5505#0 TGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTG 824
consensus_5505#1 ------------------------------------------------------------
consensus_5505#0 TCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAA 884
consensus_5505#1 ------------------------------------------------------------
consensus_5505#0 CAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAA 944
consensus_5505#1 ------------------------------------------------------------
consensus_5505#0 AAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA 988
consensus_5505#1 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||