cluster # 5510

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Anopheles gambiae
cluster # 5510 cluster # 5510 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5510#0 length = 695 sequences # 3

consensus_5510#1 length = 669 sequences # 1

consensusID : consensus_5510#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 695
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGACGGATCCCCTGATAACACCGCTCTACCAACGACCGTGCTGTGCCAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCTTCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGCCAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCGATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGCTATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGGGCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGGTGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGGCTCGATCTGCTGCTATCGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAATAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCCGGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGCTCCGTTCTTGTGCACGATTCTGCTCGTATTCCAACTGTACCGTACGGTG]

[+] EMBL BM587595             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGACGGATCCCCTGATAACACCGCTCTACCAACGACCGTGCTGTGCCAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCTTCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGCCAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCGATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGCTATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGGGCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGGTGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGGCTCGATCTGCTGCTATCGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAATAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCCGGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGCTCCGTTCTTGTGCACGATTCTGCTCGTATTCCAACTGTACCGTACGGTG]
[+] EMBL BM621089             [            ccgcccACGCGTCCGCGCGACGGATCCCCTGATAACACCGCTCTACCAACGACCGTGCTGTGCCAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCTTCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGCCAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCGATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGCTATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGGGCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGGTGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGGCTCGATCTGCTGCTATCGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAATAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCCGGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGCTCCGTTCTTGTGCACGATTCTGCTCGTATTCCAACT             ]
[+] EMBL BM578713             [                                            ccgCACCGCTCTACCAACGACCGTGCTGTGCCAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCTTCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGCCAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCGATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGCTATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGGGCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGGTGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGGCTCGATCTGCTGCTATCGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAATAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCCGGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGC                                                 ]




>consensus_5510#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGCGACGGATCCCCTGATAACACCGCTCTACCA
ACGACCGTGCTGTGCCAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCT
TCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGC
CAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCG
ATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGC
TATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGG
GCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGG
TGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGGCTCGATCTGCTGCTAT
CGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAA
TAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCC
GGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGCTCCGTTCTTGTGCA
CGATTCTGCTCGTATTCCAACTGTACCGTACGGTG

consensusID : consensus_5510#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGCCCACGCGTCCGCCGCTCTACCATCGACCGTGCTGTGCAAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCTTCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGCCAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCGATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGCTATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGGGCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGGTGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGACTCGATCTGCTGCTATCGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAATAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCCGGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGCTCCGTTCTTGTGCACGATTCTGCTCGTATTCCAACTGTACCGTACGGTGATAGGAGC]

[+] EMBL BM629199             [CCGCCCACGCGTCCGCCGCTCTACCATCGACCGTGCTGTGCAAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCTTCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGCCAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCGATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGCTATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGGGCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGGTGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGACTCGATCTGCTGCTATCGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAATAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCCGGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGCTCCGTTCTTGTGCACGATTCTGCTCGTATTCCAACTGTACCGTACGGTGATAGGAGC]




>consensus_5510#1
CCGCCCACGCGTCCGCCGCTCTACCATCGACCGTGCTGTGCAAACGACGGAAACATCCTT
ACGCATGATACTCTAGCGTGTGTGCTTCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAA
TCGGTGCTTCCGCCACTGACCTTTGCCAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGT
CGCGTTCCGTCGAGAGCGCTCGATCGATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAAT
TCCTTTCACCAATCCTCGGTTCCTGCTATACGCCGAATCAATGGCGCTCGAAGCTACCAC
ATTCTTCGATTGGGCCTCCAACCAGGGCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTT
TACCCATCCTGGTCCCTTCGGTCCGGTGCCAATATCAAACAGTGCACAATTAGTGCCGGA
TGAAAATCGACTCGATCTGCTGCTATCGCCGGCGCAGTTTGGACTACTTACTGGCGTTGT
TTTGTTTCTGTTTCTGCGACACAAAATAGCCCGATGGAGGGAAGAGCACAGCCACCTCAA
AATGACCAGCAGCGCAGACATTCGCCGGGCAGCGTACACCTTCCTAACGTTTCTCGAGTT
CTTGGCGCTCGCTCCGTTCTTGTGCACGATTCTGCTCGTATTCCAACTGTACCGTACGGT
GATAGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5510#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGCGACGGATCCCCTGATAACACCGCTCTACCA 60
consensus_5510#1      ----------------------------------CCGCCCACGCGTCCGCCGCTCTACCA 26
                                                           ***  *    * ***********

consensus_5510#0      ACGACCGTGCTGTGCCAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCT 120
consensus_5510#1      TCGACCGTGCTGTGCAAACGACGGAAACATCCTTACGCATGATACTCTAGCGTGTGTGCT 86
                       ************** ********************************************

consensus_5510#0      TCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGC 180
consensus_5510#1      TCGCGTCGTGTAAGCCAACAGCTGATTGCTGGAATCGGTGCTTCCGCCACTGACCTTTGC 146
                      ************************************************************

consensus_5510#0      CAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCG 240
consensus_5510#1      CAAGTGATCCTCGCATTTTTGTGGTTTTGTGTGTCGCGTTCCGTCGAGAGCGCTCGATCG 206
                      ************************************************************

consensus_5510#0      ATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGC 300
consensus_5510#1      ATCAAGTGCAAAGTGAAGTGCAAAGATTGCGAATTCCTTTCACCAATCCTCGGTTCCTGC 266
                      ************************************************************

consensus_5510#0      TATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGG 360
consensus_5510#1      TATACGCCGAATCAATGGCGCTCGAAGCTACCACATTCTTCGATTGGGCCTCCAACCAGG 326
                      ************************************************************

consensus_5510#0      GCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGG 420
consensus_5510#1      GCGTTTCCTTCTGGGAAGTTGTGTCCCGCAACTTTACCCATCCTGGTCCCTTCGGTCCGG 386
                      ************************************************************

consensus_5510#0      TGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGGCTCGATCTGCTGCTAT 480
consensus_5510#1      TGCCAATATCAAACAGTGCACAATTAGTGCCGGATGAAAATCGACTCGATCTGCTGCTAT 446
                      ******************************************* ****************

consensus_5510#0      CGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAA 540
consensus_5510#1      CGCCGGCGCAGTTTGGACTACTTACTGGCGTTGTTTTGTTTCTGTTTCTGCGACACAAAA 506
                      ************************************************************

consensus_5510#0      TAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCC 600
consensus_5510#1      TAGCCCGATGGAGGGAAGAGCACAGCCACCTCAAAATGACCAGCAGCGCAGACATTCGCC 566
                      ************************************************************

consensus_5510#0      GGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGCTCCGTTCTTGTGCA 660
consensus_5510#1      GGGCAGCGTACACCTTCCTAACGTTTCTCGAGTTCTTGGCGCTCGCTCCGTTCTTGTGCA 626
                      ************************************************************

consensus_5510#0      CGATTCTGCTCGTATTCCAACTGTACCGTACGGTG-------- 695
consensus_5510#1      CGATTCTGCTCGTATTCCAACTGTACCGTACGGTGATAGGAGC 669
                      ***********************************