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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1216 fasta sequence
[CCGCCCTGACATTGCCGGGGAGCTCGATCTCTGGTCTTTGGTGATGCGGATCTTTCACTTGTTTACTTTCGTATTGATGTACCATGTGTGTATGACGAATGTAAGAATACTGTGCATGTTCTGTGTGTGTGTGTGTGTGTGTACGTGACTGTATGTGTACAGAGTGTGTACTTGAAAGATGTGAGCTTTACGTTCCATATACGCAATCACCTGCGCAACACTCACATCGGGCATAGGAAAAACATAAGTTATGGCGTCACCATAGATGAGCATCGATGTTTTAGATATGTATCTGTCCAGTAAAGCGTCCTGCAAGCAAGATGAATGTCTATGTGCTCTCGAAAGGATGTCGGGTGCCGCTGAGGACAAAACTGGGCGAAGGCTATAGCACCAGCTCCTAGTTAATCTGTTTAGAAATCCTGTGTTGCAAATGTCCGCACAACCACGTCCTACTTCTTTCTTTCTGTCCAACTACGCGGAGCATGGTTCACTTCCAGCTCCAGCTATGTTTAGTCTGTTGAAACGAGGAACCAAATTCGAAACCCCTAACTCAATACCAACTTCTGAAACACACAAACACACACACAAACACACACTCTCCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAACGCCACCGAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAGAGAAGCGAGAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGACATATCCCAATGTCA]
[+] EMBL BM579761 [CCGCCCTGACATTGCCGGGGAGCTCGATCTCTGGTCTTTGGTGATGCGGATCTTTCACTTGTTTACTTTCGTATTGATGTACCATGTGTGTATGACGAATGTAAGAATACTGTGCATGTTCTGTGTGTGTGTGTGTGTGTGTACGTGACTGTATGTGTACAGAGTGTGTACTTGAAAGATGTGAGCTTTACGTTCCATATACGCAATCACCTGCGCAACACTCACATCGGGCATAGGAAAAACATAAGTTATGGCGTCACCATAGATGAGCATCGATGTTTTAGATATGTATCTGTCCAGTAAAGCGTCCTGCAAGCAAGATGAATGTCTATGTGCTCTCGAAAGGATGTCGGGTGCCGCTGAGGACAAAACTGGGCGAAGGCTATAGCACCAGCTCCTAGTTAATCTGTTTAGAAATCCTGTGTTGCAAATGTCCGCACAACCACGTCCTACTTCTTTCTTTCTGTCCAACTACGCGGAGCATGGTTCACTTCCAGCTCCAGCTATGTTTAGTCTGTTGAAACGAGGAACCAAATTCGAAACCCCTAACTCAATACCAACTTCTGAAACACACAAACACACACACAAACACACACTCTCCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTG ]
[+] EMBL BM641130 [ ccgCAATACCAACTTCTGAAACACACAAACACACACACAAACACACACTCTCCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAACGCCACCGAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAGAGAAGCGAGAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGACATATCCCAATGTCA]
consensusID : consensus_5523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[CGACCCACGCGTCCGCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAGCGCCACCGAAATGAAACAACAAAAAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAAAGAAGCGAAAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGGCATATCCAAATGTCACTTGGAACAAAAAATAGAAAAAAAG-AAAACATTTACTAAACCAAGCGATACACGCTTAGAGTGTTAAAGGTATGCGCCATTGAGTTTTGGGTTCTGTTGAATCCAGTTTATAACAAAATGCATTTTCAAATGCTCTTTCGTCTACT]
[+] EMBL BM631068 [CGACCCACGCGTCCGCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAGCGCCACCGAAATGAAACAACAAAAAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAAAGAAGCGAAAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGGCATATCCAAATGTCACTTGGAACAAAAAATAGAAAAAAAG AAAACATTTACTAAACCAAGCGATA ]
[+] EMBL BM638629 [ ccGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATTTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAGCGCCACCGAAATGAAACAACAAAAAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCTGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAAAGAAGCGAAAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGGCATATCCAAATGTCACTTGGAACAAAAAATAGAAAAAAAGAAAAACATTTACTAAACCAAGCGATACACGCTTAGAGTGTTAAAGGTATGCGCCATTGAGTTTTGGGTTCTGTTGAATCCAGTTTATAACAAAATGCATTTTCAAATGCTCTTTCGTCTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5523#0 CCGCCCTGACATTGCCGGGGAGCTCGATCTCTGGTCTTTGGTGATGCGGATCTTTCACTT 60
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 GTTTACTTTCGTATTGATGTACCATGTGTGTATGACGAATGTAAGAATACTGTGCATGTT 120
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 CTGTGTGTGTGTGTGTGTGTGTACGTGACTGTATGTGTACAGAGTGTGTACTTGAAAGAT 180
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 GTGAGCTTTACGTTCCATATACGCAATCACCTGCGCAACACTCACATCGGGCATAGGAAA 240
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 AACATAAGTTATGGCGTCACCATAGATGAGCATCGATGTTTTAGATATGTATCTGTCCAG 300
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 TAAAGCGTCCTGCAAGCAAGATGAATGTCTATGTGCTCTCGAAAGGATGTCGGGTGCCGC 360
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 TGAGGACAAAACTGGGCGAAGGCTATAGCACCAGCTCCTAGTTAATCTGTTTAGAAATCC 420
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 TGTGTTGCAAATGTCCGCACAACCACGTCCTACTTCTTTCTTTCTGTCCAACTACGCGGA 480
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 GCATGGTTCACTTCCAGCTCCAGCTATGTTTAGTCTGTTGAAACGAGGAACCAAATTCGA 540
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 AACCCCTAACTCAATACCAACTTCTGAAACACACAAACACACACACAAACACACAC-TCT 599
consensus_5523#1 ----------------------------------------------CGACCCACGCGTCC 14
** *** * **
consensus_5523#0 CCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAAT 659
consensus_5523#1 GCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAAT 74
***********************************************************
consensus_5523#0 CTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGA 719
consensus_5523#1 CTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGA 134
************************************************************
consensus_5523#0 CAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTA 779
consensus_5523#1 CAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTA 194
************************************************************
consensus_5523#0 CACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAACGCCACCGAAA--- 836
consensus_5523#1 CACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAGCGCCACCGAAATGA 254
********************************************* ***********
consensus_5523#0 -------------GTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATA 883
consensus_5523#1 AACAACAAAAAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATA 314
***********************************************
consensus_5523#0 GAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACA 943
consensus_5523#1 GAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACA 374
************************************************************
consensus_5523#0 AACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGA 1003
consensus_5523#1 AACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGA 434
************************************************************
consensus_5523#0 AACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACA 1063
consensus_5523#1 AACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACA 494
************************************************************
consensus_5523#0 TATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAGAGAAGCGAGA 1123
consensus_5523#1 TATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAAAGAAGCGAAA 554
************************************************* ******** *
consensus_5523#0 AGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTG 1183
consensus_5523#1 AGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTG 614
************************************************************
consensus_5523#0 GATATCATTCACGGTCGACATATCCCAATGTCA--------------------------- 1216
consensus_5523#1 GATATCATTCACGGTCGGCATATCCAAATGTCACTTGGAACAAAAAATAGAAAAAAAGAA 674
***************** ******* *******
consensus_5523#0 ------------------------------------------------------------
consensus_5523#1 AACATTTACTAAACCAAGCGATACACGCTTAGAGTGTTAAAGGTATGCGCCATTGAGTTT 734
consensus_5523#0 -----------------------------------------------------------
consensus_5523#1 TGGGTTCTGTTGAATCCAGTTTATAACAAAATGCATTTTCAAATGCTCTTTCGTCTACT 793
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||