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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[CCGAAAAACAACAGTTTATCAAAACAAACGAACATAATAGAGAGGAAGCGTTATACATACATAAAAAATTAGAAAAAAAGAAAGAGAAACAAACGAGGAAGAAAAAGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAACAAACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTTGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAATATACATATGTCGTAATGAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGCTAGGGTGTGTGTGTGTGTGGGTGGGGGCTGGAAAACATTTTTACACACTTAGAGAACACAGTTAGATAGAGCAAATTGGACCGATGCAGGCGCTCTTAGCATCGAGCAGAGCGTTGAGGAATGTTTTTTGATAAAAGACACAGATTTTTTTTTTATTTCCATCTTCCTTCATGGCCATGACACAGTTTGTAACACACATATATATGCACACATACACATTAAATTCTTTCACAAATTAGCACCCAGACATACACTCACACACACACACGGACACACACACACACACAC]
[+] EMBL BM652538 [CCGAAAAACAACAGTTTATCAAAACAAACGAACATAATAGAGAGGAAGCGTTATACATACATAAAAAATTAGAAAAAAAGAAAGAGAAACAAACGAGGAAGAAAAAGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAACAAACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTTGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAATATACATATGTCGTAATGAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGCTAGGGTGTGTGTGTGTGTGGGTGGGGGCTGGAAAACATTTTTACACACTTAGAGAACACAGTTAGATAGAGCAAATTGGACCGATGCAGGCGCTCTTAGCATCGAGCAGAGCGTTGAGGAATGTTTTTTGATAAAAGACACAGATTTTTTTTTTATTTCCATCTTCCTTCATGGCCATGACACAGTTTGTAACACACATATATATGCACACATACACATTAAATTCTTTCACAAATTAGCACCCAGACATACACTCACACACACACACGGACACACACACACACACAC]
consensusID : consensus_5529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGCGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACCTTCTTTTTTCCTCTCCGCATTGGGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAACAAACACACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACACACAATTATTTTGCATGGTTGTTGTAGACATCCGGTTAGGGACAGAGAATTTCGTAAAACCCTCCACTGTGAGCAGATGTTTGGCAGTAGCGTGGCTCAAACGTATTTCATGTTGGTCATTGTTTTGTTTCCGTTGTTACCTCCTGTGTCTCCATCTACTTGTGATAGGTTTTACTCCGGCGTCATCCTTCGGAAAAC]
[+] EMBL BM609437 [CCGCGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACCTTCTTTTTTCCTCTCCGCATTGGGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAACAAACACACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACACACAATTATTTTGCATGGTTGTTGTAGACATCCGGTTAGGGACAGAGAATTTCGTAAAACCCTCCACTGTGAGCAGATGTTTGGCAGTAGCGTGGCTCAAACGTATTTCATGTTGGTCATTGTTTTGTTTCCGTTGTTACCTCCTGTGTCTCCATCTACTTGTGATAGGTTTTACTCCGGCGTCATCCTTCGGAAAAC]
consensusID : consensus_5529#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence
[CCGATGTGCAATTATTCAAGCGGGGAGGGGTGCAGGATAATAATACTTAACAGTTTAGCTATTGTACGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACTTTCTTTTTTCCTCTCCGCATTGTGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGATAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAAACAAACACTCACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTGGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAAATATACATATGTCGTAATGAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGC]
[+] EMBL BM580169 [CCGATGTGCAATTATTCAAGCGGGGAGGGGTGCAGGATAATAATACTTAACAGTTTAGCTATTGTACGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACTTTCTTTTTTCCTCTCCGCATTGTGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGATAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAAACAAACACTCACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTGGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAAATATACATATGTCGTAATGAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGC]
[+] EMBL BM593855 [ ccgTAATACTTAACAGTTTAGCTATTGTACGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACCTTCTTTTTTCCTCTCCGCATTGGGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAG AAAAAAAACAA ACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTTGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTG AAAAAAAAATATACATATGTCGTAATGAGTTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5529#1 ------------------------------------------------------------
consensus_5529#2 CCGATGTGCAATTATTCAAGCGGGGAGGGGTGCAGGATAATAATACTTAACAGTTTAGCT 60
consensus_5529#0 ------------------------------------------------------------
consensus_5529#1 ---CCGCGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTG 57
consensus_5529#2 ATTGTACGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTG 120
consensus_5529#0 ------------------------------------------------------------
consensus_5529#1 TTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACCTT 117
consensus_5529#2 TTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACTTT 180
consensus_5529#0 ------------------------------------------------------------
consensus_5529#1 CTTTTTTCCTCTCCGCATTGGGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAA 177
consensus_5529#2 CTTTTTTCCTCTCCGCATTGTGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAA 240
consensus_5529#0 -----------------CCGAAAAACAACAGTTTATCAA-----AACAAACGAACATAAT 38
* * * * **** * **** * *** * *
consensus_5529#1 GCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCT 237
consensus_5529#2 GCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCT 300
consensus_5529#0 AGAGAGGAAGCGTTATACATACATAA-AAAATTAGAAAAAAA-----GAAAGAG------ 86
* * * * * **** *** ** ****** ** * * * *
consensus_5529#1 ACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATA 297
consensus_5529#2 ACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATA 360
consensus_5529#0 AAACAAACGAGGAAGA------AAAAGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATA 140
* ****** * * * * **********************************
consensus_5529#1 GAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAA 357
consensus_5529#2 GAGATAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAA 420
consensus_5529#0 GAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAA 200
**** *******************************************************
consensus_5529#1 ATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAA-CAAACA 416
consensus_5529#2 ATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAAACAAACA 480
consensus_5529#0 ATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAA-CAAACA 259
***************************************************** ******
consensus_5529#1 CACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACA 476
consensus_5529#2 CTCACACTCACACATGTTGAAAACTAAATAC-TGCGTCTACTGCTTTTGGTAATTGTGCG 539
consensus_5529#0 CTCACAC------ATGTTGAAAACTAAATAC-TGCGTCTACTGCTTTTTGTAATTGTGCG 312
* ***** * * * * * ** * ** * *
consensus_5529#1 CACAATTATTTTGCATGGT-TGTTGTAGACATCCGGTTAGGGACAGAGA-ATTTCGTAAA 534
consensus_5529#2 AGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAAATATACATATGTCGTAAT 599
consensus_5529#0 AGCCGCGGTTGTAAACTATATGTTTTTC-TTTTGAAAAAAAAATATACATATGTCGTAAT 371
* ** * * * **** * * * * * * * ** ******
consensus_5529#1 A----CCCTCCACTGTGAGCAGATGTTTGGCAGTAGCGTGGCTCAAACGTATTTCATGT- 589
consensus_5529#2 GAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGC------------- 646
consensus_5529#0 GAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGCTAGGGTGTGTGTG 431
** *** * ** * * * ** ** * ** * *
consensus_5529#1 ----TGGTCATTGTTTTGTTTCCGTTGTTACCTCCTGTGTCTCCATCTACTTGTGATAGG 645
consensus_5529#2 ------------------------------------------------------------
consensus_5529#0 TGTGTGGGTGGGGGCTGGAAAACATTTTTACACACTTAGAGAACACAGTTAGATAGAGCA 491
consensus_5529#1 TTTTACTCCGGCGTCATCCTTCGGAAAAC------------------------------- 674
consensus_5529#2 ------------------------------------------------------------
consensus_5529#0 AATTGGACCGATGCAGGCGCTCTTAGCATCGAGCAGAGCGTTGAGGAATGTTTTTTGATA 551
consensus_5529#1 ------------------------------------------------------------
consensus_5529#2 ------------------------------------------------------------
consensus_5529#0 AAAGACACAGATTTTTTTTTTATTTCCATCTTCCTTCATGGCCATGACACAGTTTGTAAC 611
consensus_5529#1 ------------------------------------------------------------
consensus_5529#2 ------------------------------------------------------------
consensus_5529#0 ACACATATATATGCACACATACACATTAAATTCTTTCACAAATTAGCACCCAGACATACA 671
consensus_5529#1 -----------------------------------
consensus_5529#2 -----------------------------------
consensus_5529#0 CTCACACACACACACGGACACACACACACACACAC 706
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||