cluster # 553

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Anopheles gambiae
cluster # 553 cluster # 553 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_553#0 length = 481 sequences # 1

consensus_553#1 length = 469 sequences # 1

consensusID : consensus_553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [CCGCACAACTTTGCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGAAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGGAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACGTCGGTCGTCGGCGCAATTGCTATTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAGCTGAAGAAAGAGGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCATGGTATGCAGTTTGCCGACTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGGAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATAAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAATAAGTATGTAGC]

[+] EMBL BM642696             [CCGCACAACTTTGCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGAAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGGAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACGTCGGTCGTCGGCGCAATTGCTATTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAGCTGAAGAAAGAGGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCATGGTATGCAGTTTGCCGACTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGGAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATAAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAATAAGTATGTAGC]




>consensus_553#0
CCGCACAACTTTGCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAG
AAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTG
GAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACGTCGGTCGTCGGCGCAATTGCTA
TTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAGCT
GAAGAAAGAGGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCA
TGGTATGCAGTTTGCCGACTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCG
GAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGAT
AAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAATAAGTATGTAG
C

consensusID : consensus_553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [CCGCCCACGCGTCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGAAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGGAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACATCGGTCGTCGGCGCAATTGCTATTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAACTGAAGAAGGAAGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCATGGAATGCAGTTTGCCGATTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGGAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATAAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAAT]

[+] EMBL BM581093             [CCGCCCACGCGTCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGAAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGGAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACATCGGTCGTCGGCGCAATTGCTATTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAACTGAAGAAGGAAGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCATGGAATGCAGTTTGCCGATTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGGAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATAAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAAT]




>consensus_553#1
CCGCCCACGCGTCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAGA
AACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTGG
AGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACATCGGTCGTCGGCGCAATTGCTAT
TCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAACTG
AAGAAGGAAGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCAT
GGAATGCAGTTTGCCGATTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCGG
AAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGATA
AGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_553#0      CCGCACAACTTTGCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAG 60
consensus_553#1      CCGCCCA-CGCGTCCGGGATAATCGGATTTGGAGAGCTAAATTTATAGCTTTGCCCCCAG 59
                     **** ** *    ***********************************************

consensus_553#0      AAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTG 120
consensus_553#1      AAACATGGTTTTTACATCGGTGGTGAACTTTGTGCGCTCCCGGGGACCGGACGAGTTCTG 119
                     ************************************************************

consensus_553#0      GAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACGTCGGTCGTCGGCGCAATTGCTA 180
consensus_553#1      GAGAAAGCGCAGGATTTTCAAACTAGCCGCACACTACATCGGTCGTCGGCGCAATTGCTA 179
                     ************************************* **********************

consensus_553#0      TTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAGCT 240
consensus_553#1      TTCCATTGCGATTCGAAATGTAAACCGAGCCCTTGCATACGCCACGAAAGGACGTGAACT 239
                     ********************************************************* **

consensus_553#0      GAAGAAAGAGGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCA 300
consensus_553#1      GAAGAAGGAAGATATGCGAGAGCTGTGGACACAGCGAGTCAATGCAGGGTGCGAGCAGCA 299
                     ****** ** **************************************************

consensus_553#0      TGGTATGCAGTTTGCCGACTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCG 360
consensus_553#1      TGGAATGCAGTTTGCCGATTTCCAGTATGGGCTGTATCGCAATGATATTCTGTTGAACCG 359
                     *** ************** *****************************************

consensus_553#0      GAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGAT 420
consensus_553#1      GAAAGTGCTGGCCGACTTGGCCATTTGGGAACCGAGAACGTTTGAGGCGCTTGCCAAGAT 419
                     ************************************************************

consensus_553#0      AAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAATAAGTATGTAG 480
consensus_553#1      AAGCCAGCAAGTTCCAGAGGAGGGAAGCGGAGATAAATAAGTGATTCAAT---------- 469
                     **************************************************          

consensus_553#0      C 481
consensus_553#1      -