These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1694 fasta sequence [TTCGAGGAAGCCATCACGAAAACCTAGTTTA-CCGTTGTCTTCCGAAATGGATTCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTTTGCGAAGGGGAAGGCGTGTTGGTTCCGGTCTGTAAAATACTCGACCGTACCTTAACGGTGGACGATATCGAACGATGCACC-GGAGTAAAGATAGCGAAGGAAAACAGCATTCCGTATTCTGTTTGTGAAGATTGCCACAGCAAACTGACACTCTTTACCACCTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGTCGCTGCAGGAAATGGACAGTAACGACAAGACACGGCCTGCAATGGGTGACCACATCGGGTATATTGCAACATACGAGGGACCAACGTTCCAGAGCAAGATAGCGAAGGTGGAATATCTCGAGCAGGACGACAGTTCATCGGACTGCAGCAGCTTGCAGGGGCAAGATAATTCAGACGAAGAGGATAATTTAGCCATCGTCGTGGAAGGCAATGAATCTTACGGGGAGCATCCACAGGGTCGCAGCGTATCCCCGGACAGAGAAGCTAGTGAACAGGAAAATGAAGAAAAGGCTTCCGTTACGGACTGTGGACGCGGGGTGGACAGCGTCGGAAGTGCTTCTGACATAGAGGACAACGATGAGGAGAACGAGCGAACCCAAAAGAATGCTCTCCAGGATAAGAACTCCCGCCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGACCTTCCGGTCCATATAGTATCGCACACGAAGGAGCGCAA-CACGTCTGTCCCCATTGTTCCATGGCTTATGGGCGCAAAACGTACCTGAAGATGCACGTGGAAGCGGTGCACCTGAAGAAGGTGGTCAAAACGTGCGAACTGTGCAATCGCGGTTTTACGCAACGAACCGGCTACGAAGCACACATGCGGGCACAGCACAACATCGGAAAATGGTACGAATGCAAACTGTGCGATATGCAGTTCCGGCACCCGGGTGGCTTGCGGGAGCATAATAATCGCAAGCACAACGAAAAATCCAACTGCTCGTGCCCGACCTGTGGCATGGAGTTTCAAAGCAAAGTTGGGCTGAAAAATCACAGCAGAGTGACTCCGTGGTGCAGATGTTTGCGTGCAAGCACTGCCCGAAACGGTTCAAAAGTCCCAACGCGCACAAGCAACACGAGCTTACCCATTTGGGCGTTACCTTTCCCTGTCCGGTTTGTGCGAAAACGTACCGATACAGTCAAAACCTTACGGCTCATATGCGAAAGCACAAAACCAAAGATAGTTTATAGCCGGATGTGCAGGATGATGGGGAACCTTTTAAGCGAAATAAACTCTAACGGAACTGAAGCTCTCCTTGGCATACTGAAGGTACGGATAATGAACTACGTAGGGGTTGGCGAACCTCGTAACTCTTCTGCATATTTGTCATGGATATTCGAGCGACATCAGCTTCTTGTCCTGCAAATAGGAGAATAGCGGTTTGAAGTCGTTAAGCAGGACGGTCTCTACCATTGGATGCGATAAGCGTATATCAGCCCTGAGGCTGCATAACGAGTTCAGGTGTACCAGAGACTAGGTCCTCGGCGGCCAGTAGTCCGTAAACGAATTACACATCTACCCTTGTTGAGACAGCAATG] [+] EMBL BX624988 [TTCGAGGAAGCCATCACGAAAACCTAGTTTATCCGTTGTCTTCCGAAATGGATTCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTTTGCGAAGGGGAAGGCGTGTTGGTTCCGGTCTGTAAAATACTCGACCGTACCTTAACGGTGGACGATATCGAACGATGCACCGGGAGTAAAGATAGCGAAGGAAAACAGCATTCCGTATTCTGTTTGTGAAGATTGCCACAGCAAACTGACACTCTTTACCACCTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGTCGCTGCAGGAAATGGACAGTAACGACAAGACACGGCCTGCAATGGGTGACCACATCGGGTATATTGCAACATACGAGGGACCAACGTTCCAGAGCAAGATAGCGAAGGTGGAATATCTCGAGCAGGACGACAGTTCATCGGACTGCAGCAGCTTGCAGGGGCAAGATAATTCAGACGAAGAGGATAATTTAGCCATCGTCGTGGAAGGCAATGAATCTTACGGGGAGCATCCACAGGGTCGCAGCGTATCCCCGGACAGAGAAGCTAGTGAACAGGAAAATGAAGAAAAGGCTTCCGTTACGGACTGTGGACGCGGGGTGGACAGCGTCGGAAGTGCTTCTGACATAGAGGACAACGATGAGGAGAACGAGCGAACCCAAAAGAATGCTCTCCAGGATAANAACTCCCGCCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGACCTTC ] [+] EMBL CNS08YX6 [ gactaTTA GCGTTGTCTTCCGAAATGGATTCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTTTGCGAAGGGGAAGGCGTGTTGGTTCCGGTCTGTAAAATACTCGACCGTACCTTAACGGTGGACGATATCGAACGATGCACC GGAGTAAAGATAGCGAAGGAAAACAGCATTCCGTATTCTGTTTGTGAAGATTGCCACAGCAAACTGACACTCTTTACCACCTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGTCGCTGCAGGAAATGGACAGTAACGACAAGACACGGCCTGCAATGGGTGACCACATCGGGTATATTGCAACATACGAGGGACCAACGTTCCAGAGCAAGATAGCGAAGGTGGAATATCTCGAGCAGGACGACAGTTCATCGGACTGCAGCAGCTTGCAGGGGCAAGATAATTCAGACGAAGAGGATAATTTAGCCATCGTCGTGGAAGGCAATGAATCTTACGGGGAGCATCCACAGGGTCGCAGCGTATCCCCGGACAGAGAAGCTAGTGAACAGGAAAATGAAGAAAAGGCTTCCGTTACGGACTGTGGACGCGGGGTGGACAGCGTCGGAAGTGCTTCTGACATAGAGGACAACGATGAGGAGAACGAGCGAACCCAAAAGAATGCTCTCCAGGATAAGAACTTTCGCCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGACCTTCCGGTCCATATAGTATCGCACACGAAGGAGCGCAA CACGTCTGTCCCCATTGTTCCATGGCTTATGGGCGCAAAACGTACCTGAAGATGCACGTGGAAGCGGTGCACCTGAAGAAGGTGGTCAAAACGTGCGAACTGTGCAATCGCGGTTTTACGCAACGAACCGGCTACGAAGCACACATGCGGGCACAGCACAACATCGG ] [-] EMBL CNS08YX7 [ CTCTCCAGGATAAGAACTCCCGCCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGA CTTCCGGTCCATATAGTATCGCACACGAAGGAGCGCAAGCACGTCTGTCCCCATTGTTCCATGGCTTATGGGCGCAAAACGTACCTGAAGATGCACGTGGAAGCGGTGCACCTGAAGAAGGTGGTCAAAACGTGCGAACTGTGCAATCGCGGTTTTACGCAACGAACCGG TAAGAAGCACACATGCGGGCACAGCACAACATCGGAAAATGGTACGAATGCAAACTGTGCGATATGCAGTTCCGGCACCCGGGTGGCTTGCGGGAGCATAATAATCGCAAGCACAACGAAAAATCCAACTGCTCGTGCCCGACCTGTGGCATGGAGTTTCAAAGCAAAGTTGGGCTGAAAAATCACAGCAGAGTGACTCCGTGGTGCAGATGTTTGCGTGCAAGCACTGCCCGAAACGGTTCAAAAGTCCCAACGCGCACAAGCAACACGAGCTTACCCATTTGGGCGTTACCTTTCCCTGTCCGGTTTGTGCGAAAACGTACCGATACAGTCAAAACCTTACGGCTCATATGCGAAAGCACAAAACCAAAGATAGTTTATAGCCGGATGTGCAGGATGATGGGGAACCTTTTAAGCGAAATAAACTCTAACGGAACTGAAGCTCTCCTTGGCATACTGAAGGTACGGATAATGAACTACGTAGGGGTTGGCGAACCTCGTAACTCTTCTGCATATTTGTCATGGATATTCGAGCGACATCAGCTTCTTGTCCTGCAAATAGGAGAATAGCGGTTTGAAGTCGTTAAGCAGGACGGTCTCTACCATTGGATGCGATAAGCGTATATCAGCCCTGAGGCTGCATAACGAGTTCAGGTGTACCAGAGACTAGGTCCTCGGCGGCCAGTAGTCCGTAAACGAATTACACATCTACCCTTGTTGAGACAGCAATG] consensusID : consensus_5541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [AGATCGGCCGAGGCGTGNAAAGCAACACGAAAACTAGCTCGTCCGTTGTCGTCTGAAATGGAATCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTGTGCGAAGGTGAGGGTGTGTTGGTTCCGGTCAATAAAATACTCGATCTTACCTTAACGGTGGACGATATCGAACGATGCACTGGCGGTAAAGATAGCGAAGGAAAACAGCATTCCGGTATTCTGTTTGTGAAGATTGCCACAGNAAACTGACACTCTTTAGCACCGTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGGTCGGCTGCAGGGAAATGGACAGTTAACGACAGACACGGCTGCAATGGGGTGACCACATCGGGTATATTGGCAACAATACGAGGGACCAACGTTTCCAGAGCAAGATAGCGAANGTGGGACATATCTCGAGGCAGGGACCGACCAGGTTCCACTCCGGNAACTTGCAGGCAGCCTTTGAAACNGGGGGCCAAAGGANTAAGTTTCCAGGAGCGAAAGAAGGGGAGTCACATTGTAAGGCCACTCCGGTCCGTGGGAAAGGGCGCAANTGGAAACTCTTTACCGGGGGAGGCATTCCCACCAGAGGGTTCGCAAGCAGGTATACCCCCGGGAACCANGGAGANAGCTGAGNTGGAACCAGGGANNCACACTGANAAGCACACAAGGGCTTTCC] [+] EMBL BX468588 [AGATCGGCCGAGGCGTGNAAAGCAACACGAAAACTAGCTCGTCCGTTGTCGTCTGAAATGGAATCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTGTGCGAAGGTGAGGGTGTGTTGGTTCCGGTCAATAAAATACTCGATCTTACCTTAACGGTGGACGATATCGAACGATGCACTGGCGGTAAAGATAGCGAAGGAAAACAGCATTCCGGTATTCTGTTTGTGAAGATTGCCACAGNAAACTGACACTCTTTAGCACCGTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGGTCGGCTGCAGGGAAATGGACAGTTAACGACAGACACGGCTGCAATGGGGTGACCACATCGGGTATATTGGCAACAATACGAGGGACCAACGTTTCCAGAGCAAGATAGCGAANGTGGGACATATCTCGAGGCAGGGACCGACCAGGTTCCACTCCGGNAACTTGCAGGCAGCCTTTGAAACNGGGGGCCAAAGGANTAAGTTTCCAGGAGCGAAAGAAGGGGAGTCACATTGTAAGGCCACTCCGGTCCGTGGGAAAGGGCGCAANTGGAAACTCTTTACCGGGGGAGGCATTCCCACCAGAGGGTTCGCAAGCAGGTATACCCCCGGGAACCANGGAGANAGCTGAGNTGGAACCAGGGANNCACACTGANAAGCACACAAGGGCTTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5541#0 -----------TTCGAGGAAGCCATCACGAAAACCTAGTTTACCGTTGTCTTCCGAAATG 49 consensus_5541#1 AGATCGGCCGAGGCGTGNAAAGCAACACGAAAACTAGCTCGTCCGTTGTCGTCTGAAATG 60 ** * ** ** ********* * ******** ** ****** consensus_5541#0 GATTCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTTTGCGAAGGGGAAGGC 109 consensus_5541#1 GAATCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTGTGCGAAGGTGAGGGT 120 ** ***************************************** ******** ** ** consensus_5541#0 GTGTTGGTTCCGGTCTGTAAAATACTCGACCGTACCTTAACGGTGGACGATATCGAACGA 169 consensus_5541#1 GTGTTGGTTCCGGTCAATAAAATACTCGATCTTACCTTAACGGTGGACGATATCGAACGA 180 *************** ************ * **************************** consensus_5541#0 TGCACCGG-AGTAAAGATAGCGAAGGAAAACAGCATTCCG-TATTCTGTTTGTGAAGATT 227 consensus_5541#1 TGCACTGGCGGTAAAGATAGCGAAGGAAAACAGCATTCCGGTATTCTGTTTGTGAAGATT 240 ***** ** ****************************** ******************* consensus_5541#0 GCCACAGCAAACTGACACTCTTTACCACC-TTTCGTACCTTCTGCCTATCCAATGATGCC 286 consensus_5541#1 GCCACAGNAAACTGACACTCTTTAGCACCGTTTCGTACCTTCTGCCTATCCAATGATGCC 300 ******* **************** **** ****************************** consensus_5541#0 CGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGTC- 345 consensus_5541#1 CGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGGTC 360 ********************************************************* consensus_5541#0 -GCTGCAGG-AAATGGACAGT-AACGACAAGACACGGCCTGCAATGGG-TGACCACATCG 401 consensus_5541#1 GGCTGCAGGGAAATGGACAGTTAACGACA-GACACGGC-TGCAATGGGGTGACCACATCG 418 ******** *********** ******* ******** ********* *********** consensus_5541#0 GGTATATTG-CAACA-TACGAGGGACCAACGTT-CCAGAGCAAGATAGCGAAGGTGGAA- 457 consensus_5541#1 GGTATATTGGCAACAATACGAGGGACCAACGTTTCCAGAGCAAGATAGCGAANGTGGGAC 478 ********* ***** ***************** ****************** **** * consensus_5541#0 -TATCTCGAG-CAGGACGACAGTTCATCGGACTGCAGCAGCTTGCAGGGGCAAGATAATT 515 consensus_5541#1 ATATCTCGAGGCAGGGACCGACCAGGTTCCACTCCGGNAACTTGCAGG--CAGCCT--TT 534 ********* **** * * *** * * * ******** ** * ** consensus_5541#0 CAGACGAAGAGGATAATTTAGCCATCGTCGTGGAAGGCAATGAATCTTACGGGGAGCATC 575 consensus_5541#1 GAAACNG-GGGGCCAAAGGANTAAGTTTCCAGGAGCGAAAGAAG----GGGAGTCACATT 589 * ** * ** ** * * ** *** * ** * * * *** consensus_5541#0 CACAGGGTCGCAGCGTATCCCCGGACAGAGAAGCTAGTG--AACAGGAAAATGAAGAAAA 633 consensus_5541#1 -GTAAGGCCACTCCG-GTCCGTGGGAAAGGGCGCAANTGGAAACTCTTTACCGGGGGAGG 647 * ** * * ** *** ** * * ** * ** *** * * * * consensus_5541#0 GGCTTCCGTTACGGACTGTGGACGCGGGGTGGACAGCGTCGGAAGTGCTTCTGACATAGA 693 consensus_5541#1 CATTCCCACCAGAGGGTTCGCAAGCAGGTATACCCCCGGGAACCANGGAGANAGCTGAGN 707 * ** * * * * * ** ** * ** * * ** consensus_5541#0 GGACAACGATGAGGAGAACGAGCGAACCCAAAAGAATGCTCTCCAGGATAAGAACTCCCG 753 consensus_5541#1 TGGAACCAGGGANNCACACTGANAAGCACACAAGG--GCTTTCC---------------- 749 * * * ** ** * * ** *** *** *** consensus_5541#0 CCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGACCTTCCGGTCCATATAGTATC 813 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 GCACACGAAGGAGCGCAACACGTCTGTCCCCATTGTTCCATGGCTTATGGGCGCAAAACG 873 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 TACCTGAAGATGCACGTGGAAGCGGTGCACCTGAAGAAGGTGGTCAAAACGTGCGAACTG 933 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 TGCAATCGCGGTTTTACGCAACGAACCGGCTACGAAGCACACATGCGGGCACAGCACAAC 993 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 ATCGGAAAATGGTACGAATGCAAACTGTGCGATATGCAGTTCCGGCACCCGGGTGGCTTG 1053 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 CGGGAGCATAATAATCGCAAGCACAACGAAAAATCCAACTGCTCGTGCCCGACCTGTGGC 1113 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 ATGGAGTTTCAAAGCAAAGTTGGGCTGAAAAATCACAGCAGAGTGACTCCGTGGTGCAGA 1173 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 TGTTTGCGTGCAAGCACTGCCCGAAACGGTTCAAAAGTCCCAACGCGCACAAGCAACACG 1233 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 AGCTTACCCATTTGGGCGTTACCTTTCCCTGTCCGGTTTGTGCGAAAACGTACCGATACA 1293 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 GTCAAAACCTTACGGCTCATATGCGAAAGCACAAAACCAAAGATAGTTTATAGCCGGATG 1353 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 TGCAGGATGATGGGGAACCTTTTAAGCGAAATAAACTCTAACGGAACTGAAGCTCTCCTT 1413 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 GGCATACTGAAGGTACGGATAATGAACTACGTAGGGGTTGGCGAACCTCGTAACTCTTCT 1473 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 GCATATTTGTCATGGATATTCGAGCGACATCAGCTTCTTGTCCTGCAAATAGGAGAATAG 1533 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 CGGTTTGAAGTCGTTAAGCAGGACGGTCTCTACCATTGGATGCGATAAGCGTATATCAGC 1593 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 CCTGAGGCTGCATAACGAGTTCAGGTGTACCAGAGACTAGGTCCTCGGCGGCCAGTAGTC 1653 consensus_5541#1 ------------------------------------------------------------ consensus_5541#0 CGTAAACGAATTACACATCTACCCTTGTTGAGACAGCAATG 1694 consensus_5541#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||