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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence
[CCGCGGACGCGTGGGTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTACGCTCGGGCTGTCCGTGTTCAGTATGCTGCTGACCGGGCTGGTGATTGGCAACGCGTACTATCAGAAGAAACAGTTCTACCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAGCATGGCCGTTATCTACATTCAGTCGCTTGTGCTGGTGCTGATGTTGGGCAAGCTGATGAAGAAAATCTTCCTCGGCACGCTGCGGGCGGCCGAGTTCGAGCATCTGATGGAGCGGTTCTGGTACGCGCTGACCGAAACCTGTCTAGCGTTTACCGTCTTTCGGGACGACTTTAATCCCAAATTTGTGGCACTGTTTACCGTGCTGCTGTTTCTAAAGTCCTTCCATTGGCTGGCAGAAGATCGTGTCGATTATATGGAGCGCAGTCCCGTGATCGGATGGTTGTTCCACGTCCGCGTGGCCGGACTGCTGCTCTGTTTGGGGCTGTTCGATTACGAGCTCATTTCGTACGCCTACCAGTCGACCATCGCGAAAGGCGTCACGGTGCAGCTCGTGTTTGGGTTCGAGTATGCGATCCTAATGACGATGGTCATTAACACGGCCATTAAGTACATCTTCCACGCAGCCGAGCTGCGCTCAGACACGCCGTGGGAGAACAAGGCCGTGTTTCTGCTGTACACCGAGCTGATCATTGGCTTTACGCGCGTCGTACTGTACGTGGTGTTTGTTATTTTGATGGTTAAGATATTCACCCTGCCCATGTTTGCCTTCCGCCCGATGTACTACACGATGCGAAACTTCAAGAAGGCGCTTAACGACGTAATTCTCTCGCGGCGTGCTATCCGCAACATGAACACGCTCTACCCGGACGCAACGCCCGAGGAGCTGCAGATGTCGGACAACATCTGCATCATCTGCCGGGGAGGATATGGTGAGCAACTCGAAG]
[+] EMBL BM609173 [CCGCGGACGCGTGGGTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTACGCTCGGGCTGTCCGTGTTCAGTATGCTGCTGACCGGGCTGGTGATTGGCAACGCGTACTATCAGAAGAAACAGTTCTACCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAGCATGGCCGTTATCTACATTCAGTCGCTTGTGCTGGTGCTGATGTTGGGCAAGCTGATGAAGAAAATCTTCCTCGGCACGCTGCGGGCGGCCGAGTTCGAGCATCTGATGGAGCGGTTCTGGTACGCGCTGACCGAAACCTGTCTAGCGTTTACCGTCTTTCGGGACGACTTTAATCCCAAATTTGTGGCACTGTTTACCGTGCTGCTGTTTCTAAAGTCCTTCCATTGGCTGGCAGAAGATCGTGTCGATTATATGGAGCGCAGTCCCGTGATCGGATGGTTGTTCCACGTCCGCGTGGCCGGACTGCTGCTCTGTTTGGGGCTGTTCGATTACGAGCTCATTTCGTACGCCTACCAGTCGACCATCGCGAAAGGCGTCACGGTGCAGCTCGTGTTTGGGTTCGAGTATGCGATCCTAATGACGATGGTCATTAACACGGCCATTAAGTACATCTTCCACGCAGCCGAGCTGCGCTCAGACACGCCGTGGGAGAACAAGGCCGTG ]
[+] EMBL BM607567 [ ccgGGAGCGGTTCTGGTACGCGCTGACCGAAACCTGTCTAGCGTTTACCGTCTTTCGGGACGACTTTAATCCCAAATTTGTAGCACTGTTTACCGTGCTGCTGTTTCTAAAGTCCTTCCATTGGCTGGCAGAGGATCGTGTCGATTATATGGAGCGCAGTCCCGTGATCGGATGGTTGTTCCACGTCCGCGTGGCCGGACTGCTGCTCTGTTTGGGGCTGTTCGATTACGAGCTCATTTCGTACGCCTACCAGTCGACCATCGCGAAAGGCGTCACGGTGCAGCTCGTGTTTGGGTTCGAGTATGCGATCCTAATGACGATGGTCATTAACACGGCCATTAAGTACATCTTCCACGCAGCCGAGCTGCGCTCAGACACGCCGTGGGAGAACAAGGCCGTGTTTCTGCTGTACACCGAGCTGATCATTGGCTTTACGCGCGTCGTACTGTACGTGGTGTTTGTTATTTTGATGGTTAAGATATTCACCCTGCCCATGTTTGCCTTCCGCCCGATGTACTACACGATGCGAAACTTCAAGAAGGCGCTTAACGACGTAATTCTCTCGCGGCGTGCTATCCGCAACATGAACACGCTCTACCCGGACGCAACGCCCGAGGAGCTGCAGATGTCGGACAACATCTGCATCATCTGCCGGGGAGGATATGGTGAGCAACTCGAAG]
consensusID : consensus_5550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence
[CCGCGGAAAATAGTGGTGTTTACGTGTACTTTAAAAGTGTAGTAAAGAACACAAGAATTACAGCTTTTCGCAAGGTCCACAACGCACCCCGTTTGCCGTCCCCCGCAGCCACCCCTCCAATTTGGGTAAACAGTCGTACGTGGGTGCCGCGCACTGGTCGGACCAGTTTGATGGGAGCAAACTTTGGCACCGGAAGAGTCGACGGAACGAAAACGAATGAAACACGGTGCACTGGGCGGAGAGGTGAAGAAGTTTTCTCGCGGACGAGCTTCGGCTTACAACAGGTGCTGGTGCAGCGGTGGTAAAAGCGTTCCTCCGTTCCCCGTTCGTGGGTGCCTGCCGGGAAGCTTCGCGCGACAACTGCGTTCCACCGGAAAGGTCCGGAGGTCCCCGAGGTAGACACGATTAACATATTCTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTACCGCTCGGGCTGTCCGTGTTCAGCATGCTGCTGACCGGGGCTGGTGATCGGCAACGCGTACTATCAGAAGAAACAGTACTACCCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAAGCATGGCCGTCATCTACATTCAGTCGCTCGTGCTTGGTGCTGATGTTGGGCAAGCTGATGAAGA]
[+] EMBL BM644178 [CCGCGGAAAATAGTGGTGTTTACGTGTACTTTAAAAGTGTAGTAAAGAACACAAGAATTACAGCTTTTCGCAAGGTCCACAACGCACCCCGTTTGCCGTCCCCCGCAGCCACCCCTCCAATTTGGGTAAACAGTCGTACGTGGGTGCCGCGCACTGGTCGGACCAGTTTGATGGGAGCAAACTTTGGCACCGGAAGAGTCGACGGAACGAAAACGAATGAAACACGGTGCACTGGGCGGAGAGGTGAAGAAGTTTTCTCGCGGACGAGCTTCGGCTTACAACAGGTGCTGGTGCAGCGGTGGTAAAAGCGTTCCTCCGTTCCCCGTTCGTGGGTGCCTGCCGGGAAGCTTCGCGCGACAACTGCGTTCCACCGGAAAGGTCCGGAGGTCCCCGAGGTAGACACGATTAACATATTCTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTACCGCTCGGGCTGTCCGTGTTCAGCATGCTGCTGACCGGGGCTGGTGATCGGCAACGCGTACTATCAGAAGAAACAGTACTACCCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAAGCATGGCCGTCATCTACATTCAGTCGCTCGTGCTTGGTGCTGATGTTGGGCAAGCTGATG ]
[+] EMBL BM581490 [ ccgGTGGTGTTTACGTGTACTTTAAAAGTGTAGTAAAGAACACAAGAATTACAGCTTTTCGCAAGGTCCACAACGCACTCCGTTTGCCGTCCCCCGCAGCCACCCCTCCAATTTGAGTAAACAGTCGTACGTGGGTGCCGCGCACTGGTCGGACCAGTTTGATGGGAGCAAACTTTGGCACCGGAAGAGTCGACGGAACGAAAACGAATGAAACACGGTGCACTGGGCGGAGAGGTGAAGAAGTTTTCTCGCGGACGAGCTTCGGCTTACAACAGGTGCTGGTGCAGCGGTGGTAAAAGCGTTCCTCCGTTCCCCGTTCGTGGGTGCCCGCCGGGAAGCTTCGCGCGACAACTGCGTTCCACCGG ACGGTCCGGAGGTCCCCGAGGTAGACACGATTAACATATTCTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTA CGCTCGGGCTGTCCGTGTTCAGCATGCTGCTGACC GGGCTGGTGATTGGCAACGCGTACTATCAGAAGAAACAGTTCTACCCCGTCCGTCGTGTACATCACCAAGTCGAACCCG AGCATGGCCGTTATCTACATTCAGTCGCTCGTGC TGGTGCTGATGTTGGGCAAGCTGATGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5550#0 CCGCGGACGCGTGGGTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGT 60
consensus_5550#1 ------------------------------------------------------CCGCGG 6
***
consensus_5550#0 ACGCTCGGGCTGTCCGTGTTCAGTATGCTGCTGACCGGGCTGGTGATTGGCAACGCGTAC 120
consensus_5550#1 AAAATAGTGGTGTTTACGTGTACTTTAAAAGTG-TAGTAAAGAACACAAGAATTACAGCT 65
* * * * *** ** * * * ** * * * * * *
consensus_5550#0 TATCAGAAGAA--ACAGTTCTACCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAGCA 178
consensus_5550#1 TTTCGCAAGGTCCACAACGCACCCCGTTTGCCGTCCCCCGCAGCCACCC---CTCCAATT 122
* ** *** *** * ***** * *** * ** * * * * * *
consensus_5550#0 TGGCCGTTATCTACATTCAGTCGCTTGTGCTG-GTGCTGATGTTGGGCAAGCTGATGAAG 237
consensus_5550#1 TGG-----GTAAACAGTCGTACGTGGGTGCCGCGCACTG--GTCGGACCAGTT--TGATG 173
*** * *** ** ** **** * * *** ** ** * ** * *** *
consensus_5550#0 AAAATCTTCCTCGGCACGCTGCGGGCGGCCGAGTTCGAGCATCTGATGGAGCGGTTCTGG 297
consensus_5550#1 GGAGCAAACTTTGGCACCGGAAGAGTCGACGGAACGAA--AACGAATGAAACA----CGG 227
* * * ***** * * * ** * * * *** * * **
consensus_5550#0 TACGCGCTGACCGAAACCTGTCTAGCGTTTACCGTCTTTCGGGACGACTTTAATCCCAAA 357
consensus_5550#1 TGCAC-TGGGCGGAGAGGTGAAGAAGTTTTCTCGC------GGACGAGCTTCGGCTTACA 280
* * * * * ** * ** * *** ** ****** ** * * *
consensus_5550#0 TTTGTGGCACTGTTTACCGTGCTGCTGTTTCTAAAGTCCTTCCATTGGCTGGCAGAAGAT 417
consensus_5550#1 ACAG--GTGCTGGT----GCAGCGGTGGTAAAAGCGTTCCTCCGTTCCCCGT-------T 327
* * *** * * * ** * * ** * *** ** * * *
consensus_5550#0 CGTGTCGATTATATGGAGCGCAGTCCCGTGATCGGATGGTTGTTCCACGTCCGCGTGGCC 477
consensus_5550#1 CGT---GGGTGCCTGCCGGGAAGCTTCGCG---CGACAACTGCGTTCCACCGGAAAGGTC 381
*** * * ** * * ** ** * ** ** * * * ** *
consensus_5550#0 GGACTGCTGCTCTGTTTGGGGCTGTTCGATTACGAGCTCATTTCGTACGCCTACCAGTCG 537
consensus_5550#1 CGGAGGTCCCCGAGGTAGACACGATTAACATATTCTTCGAAACCATCAGCCAGCTGGCTG 441
* * * * * * * ** ** * * * *** * * *
consensus_5550#0 ACCATCGCGAAAGGCGTCACGGTGCAGCTCGTGTTTGGGTTCGAGTATGCGATCCTAATG 597
consensus_5550#1 AAAACTGCGTCAAGATGC---GTACCGCTCGGGCT---GTCCGTGTTCAGCATGCTGCTG 495
* * *** * * * ** * ***** * * ** ** ** ** ** **
consensus_5550#0 ACGATGGTCATTAACACGGCCATTAAGTACATCTTCCACGCAGCCGAGCTGCGCTCAGAC 657
consensus_5550#1 ACCGGGGCTGGTGAT-CGGC-AACGCGTAC-TATCAGAAGAAACAGTACTACCCC---GT 549
** ** * * **** * **** * * * * * * * ** * *
consensus_5550#0 ACGCCGTGGGAGAACAAGGCCGTGTTTCTGCTGTACACCGAGCTGATCATTGGCTTTACG 717
consensus_5550#1 CCGTCGTGT----ACATCACCAAGTCGAACCCG-AAGCATGGCCG-TCATCTACATTCAG 603
** **** *** ** ** * * * * ** * **** * ** *
consensus_5550#0 CGCGTCGTACTGTACG-TGGTGTTTGTTATTTTGATGGTTAAGATATTCACCCTGCCCAT 776
consensus_5550#1 TCGCTCGTGCTTGGTGCTGATGTTGGGCAAGCTGATGAAGA------------------- 644
**** ** * ** **** * * ***** *
consensus_5550#0 GTTTGCCTTCCGCCCGATGTACTACACGATGCGAAACTTCAAGAAGGCGCTTAACGACGT 836
consensus_5550#1 ------------------------------------------------------------
consensus_5550#0 AATTCTCTCGCGGCGTGCTATCCGCAACATGAACACGCTCTACCCGGACGCAACGCCCGA 896
consensus_5550#1 ------------------------------------------------------------
consensus_5550#0 GGAGCTGCAGATGTCGGACAACATCTGCATCATCTGCCGGGGAGGATATGGTGAGCAACT 956
consensus_5550#1 ------------------------------------------------------------
consensus_5550#0 CGAAG 961
consensus_5550#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||