cluster # 5554

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Anopheles gambiae
cluster # 5554 cluster # 5554 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5554#0 length = 724 sequences # 2

consensus_5554#1 length = 581 sequences # 1
consensus_5554#2 length = 531 sequences # 1

consensusID : consensus_5554#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 724
fasta sequence

                              [CCGCGGACGCGTGGGCGCGTACACCGGATCTGGCAAATCGCCGGCTTGAGAGTGTTCGAGAGCTGGAATTCATTCGTGGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGTGCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATACGGGT---TTGTGTTTGGTTGTTTGTAAGTTGTTCACGGAATTAAA--GTGTGTTCGTGCAGCAAAAACGTGTCACCGTCGTGTGGTGAACAGCAGCAGGCCGGCCCAGCACGGCTTGTGTTTGATTTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCGTCGGTGTCGGTTGGCAAAAAA-AAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTGGGTGTGAGACGGTGAGGAGTGGAGAGGAGTAAAGAGGGGGGAAACTTTATTAAGCAAACACACCAAACAGGACAGGAGAACGAGCAGCCGATGAAGAAAAACGATCAAGCTGAATAAACAAAAAACCTTCTCGAACGCTCCGGTTGGAACAACTGCGGCACAGTCCAATGTAAAGGCATAGACACAGAAAGAGAACGAGAGAAGACTGTCCGCGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGG]

[+] EMBL BM598229             [CCGCGGACGCGTGGGCGCGTACACCGGATCTGGCAAATCGCCGGCTTGAGAGTGTTCGAGAGCTGGAATTCATTCGTGGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGTGCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATACGGGT   TTGTGTTTGGTTGTTTGTAAGTTGTTCACGGAATTAAA  GTGTGTTCGTGCAGCAAAAACGTGTCACCGTCGTGTGGTGAACAGCAGCAGGCCGGCCCAGCACGGCTTGTGTTTGATTTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCGTCGGTGTCGGTTGGCAAAAAA AAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTGGGTGTGAGACGGTGAGGAGTGGAGAGGAGTAAAGAGGGGGGAAACTTTATTAAGCAAACACACC                                                                                                                                                                                                                                                      ]
[+] EMBL BM581698             [                                                                            ccGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGTGCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATACGGGTTGGTTGTGTTTGGTTGTTTGTAAGTTGTTCACGGAATTAAAGTGTGTGTTCGTGCAGCAAAAACGTGTCACCGTCGAGTGGTGAACAGCAGCGGGCCGGCCCAGCACGGCTTGTGTTTGATTTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCGTCGGTGTCGGTTGGCAAAAAAGAAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTGGGTGTGAGACGGTGAGGAGTGGAGACGAGTAAAGAGGGGGGAAACTTTGTTAAGCAAATACACCAAACAGGACAGGAGAACGAGCAGCCGATGAAGAAAAACGATCAAGCTGAATAAACAAAAAACCTTCTCGAACGCTCCGGTTGGAACAACTGCGGCACAGTCCAATGTAAAGGCATAGACACAGAAAGAGAACGAGAGAAGACTGTCCGCGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGG]




>consensus_5554#0
CCGCGGACGCGTGGGCGCGTACACCGGATCTGGCAAATCGCCGGCTTGAGAGTGTTCGAG
AGCTGGAATTCATTCGTGGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGT
GCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATAC
GGGTTTGTGTTTGGTTGTTTGTAAGTTGTTCACGGAATTAAAGTGTGTTCGTGCAGCAAA
AACGTGTCACCGTCGTGTGGTGAACAGCAGCAGGCCGGCCCAGCACGGCTTGTGTTTGAT
TTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCGTCGGTG
TCGGTTGGCAAAAAAAAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTGGGTGTG
AGACGGTGAGGAGTGGAGAGGAGTAAAGAGGGGGGAAACTTTATTAAGCAAACACACCAA
ACAGGACAGGAGAACGAGCAGCCGATGAAGAAAAACGATCAAGCTGAATAAACAAAAAAC
CTTCTCGAACGCTCCGGTTGGAACAACTGCGGCACAGTCCAATGTAAAGGCATAGACACA
GAAAGAGAACGAGAGAAGACTGTCCGCGGCCAAAACTAAAGATACAAACTGAACGCGGGG
AAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATT
GTGG

consensusID : consensus_5554#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [GGCAGAATTCGGCACGATGGTAATAGACACAGAAAGAGAACGAGANNAAGACTGCCCGTGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGGTGGAAACTTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGTTTGACCGGACAAACTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGTCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTGAACACTCTCCCTCCCAGAGCGGAGATTTCCAATTGCTCCGATATATAGCGGAAGGTGCTGGTTTCGGAAAAAGAAAACAATAACACAAAAAGGGTGAAGGAAGGGAAGTGAAATAAGTTTCGTTATTAGGCAAGGCCAACAAGCANACATCTGCGGCAGCCGGAGNTGGGCATTTGCCGATTNGACCACTTGGTCNTGATGGATTCGGTATNTGGTAACGGTTGGTGCAACAGAGGCCAANGNCGCGAGGGAAAAACAAAAACGGGGNGGGAAACAANAAAGGGGA]

[+] EMBL BX468912             [GGCAGAATTCGGCACGATGGTAATAGACACAGAAAGAGAACGAGANNAAGACTGCCCGTGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGGTGGAAACTTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGTTTGACCGGACAAACTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGTCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTGAACACTCTCCCTCCCAGAGCGGAGATTTCCAATTGCTCCGATATATAGCGGAAGGTGCTGGTTTCGGAAAAAGAAAACAATAACACAAAAAGGGTGAAGGAAGGGAAGTGAAATAAGTTTCGTTATTAGGCAAGGCCAACAAGCANACATCTGCGGCAGCCGGAGNTGGGCATTTGCCGATTNGACCACTTGGTCNTGATGGATTCGGTATNTGGTAACGGTTGGTGCAACAGAGGCCAANGNCGCGAGGGAAAAACAAAAACGGGGNGGGAAACAANAAAGGGGA]




>consensus_5554#1
GGCAGAATTCGGCACGATGGTAATAGACACAGAAAGAGAACGAGANNAAGACTGCCCGTG
GCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTC
TCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGGTGGAAACTTTGAACAGTGAAGAAG
GTTCATCATTACGTGTACGCGAGCGACCGTTTGACCGGACAAACTCTGTCGGTGAACACC
GCGGGTGTACGTTTCGCTGTGTCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTGAACAC
TCTCCCTCCCAGAGCGGAGATTTCCAATTGCTCCGATATATAGCGGAAGGTGCTGGTTTC
GGAAAAAGAAAACAATAACACAAAAAGGGTGAAGGAAGGGAAGTGAAATAAGTTTCGTTA
TTAGGCAAGGCCAACAAGCANACATCTGCGGCAGCCGGAGNTGGGCATTTGCCGATTNGA
CCACTTGGTCNTGATGGATTCGGTATNTGGTAACGGTTGGTGCAACAGAGGCCAANGNCG
CGAGGGAAAAACAAAAACGGGGNGGGAAACAANAAAGGGGA

consensusID : consensus_5554#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [TTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGATTGACCGGACAAACTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGCCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTAACCACTCTCCCTCCCAGAGCGGAGATTTCCAATCGCTCCGATATATAGCGGAAGGAGCTGGTTTCGGAAAAAACAAAACACAAAAAGGGTGTAGGAAGGAAGTGAAATAATTTCGTTATTAGCAGCAAGAACACACACAGCCGCGGCGCGAGCGGCTTGCGTTTTCATGTCTGTGTTCGTTTGTAAGTGGTGAAAAGCAACGGGGGAAAAAAACGGTGGAAAAGAGCAAAAATTTAATCAAAAAATCGGAGCAAATTTTTTGTTCTTTTGCTCTCTCTCTACAGTTTGTTGATTGATAAATTGATTGATCGTTAGTGGTTAAGTGTTGGATAGGCGCCGCCAATCCGAGTGCGTGTGTGTGTTGAGTTTTTTTTTATGTGTGTGCAAGCGGCGCACGAT]

[+] EMBL BX625036             [TTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGATTGACCGGACAAACTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGCCGCCGCCCCCCAATCTGTCCGTGAAAGGAGTTAACCACTCTCCCTCCCAGAGCGGAGATTTCCAATCGCTCCGATATATAGCGGAAGGAGCTGGTTTCGGAAAAAACAAAACACAAAAAGGGTGTAGGAAGGAAGTGAAATAATTTCGTTATTAGCAGCAAGAACACACACAGCCGCGGCGCGAGCGGCTTGCGTTTTCATGTCTGTGTTCGTTTGTAAGTGGTGAAAAGCAACGGGGGAAAAAAACGGTGGAAAAGAGCAAAAATTTAATCAAAAAATCGGAGCAAATTTTTTGTTCTTTTGCTCTCTCTCTACAGTTTGTTGATTGATAAATTGATTGATCGTTAGTGGTTAAGTGTTGGATAGGCGCCGCCAATCCGAGTGCGTGTGTGTGTTGAGTTTTTTTTTATGTGTGTGCAAGCGGCGCACGAT]




>consensus_5554#2
TTTGAACAGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGATTGACCGGACAAA
CTCTGTCGGTGAACACCGCGGGTGTACGTTTCGCTGTGCCGCCGCCCCCCAATCTGTCCG
TGAAAGGAGTTAACCACTCTCCCTCCCAGAGCGGAGATTTCCAATCGCTCCGATATATAG
CGGAAGGAGCTGGTTTCGGAAAAAACAAAACACAAAAAGGGTGTAGGAAGGAAGTGAAAT
AATTTCGTTATTAGCAGCAAGAACACACACAGCCGCGGCGCGAGCGGCTTGCGTTTTCAT
GTCTGTGTTCGTTTGTAAGTGGTGAAAAGCAACGGGGGAAAAAAACGGTGGAAAAGAGCA
AAAATTTAATCAAAAAATCGGAGCAAATTTTTTGTTCTTTTGCTCTCTCTCTACAGTTTG
TTGATTGATAAATTGATTGATCGTTAGTGGTTAAGTGTTGGATAGGCGCCGCCAATCCGA
GTGCGTGTGTGTGTTGAGTTTTTTTTTATGTGTGTGCAAGCGGCGCACGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5554#1      ------------------------------------------------------------
consensus_5554#2      ------------------------------------------------------------
consensus_5554#0      CCGCGGACGCGTGGGCGCGTACACCGGATCTGGCAAATCGCCGGCTTGAGAGTGTTCGAG 60
                                                                                  

consensus_5554#1      ----------GGCAGAATTCGGCACGATGGTAATAGACACAGAAAGAGAACGAGANNAAG 50
consensus_5554#2      ------------------------------------------------------------
consensus_5554#0      AGCTGGAATTCATTCGTGGCAGCACCATTGTTTTGCCATCGGCAGTAGAGCGAAGGTGGT 120
                                                                                  

consensus_5554#1      ACTGCCCGTGGCCAAAACTAAAGATACAAACTGAACGCGGGGAAAGTAGCTGAGCGACAG 110
consensus_5554#2      ------------------------------------------------------------
consensus_5554#0      GCGCGTCGCGTTTTTGGTGCCGTCGTCGATTTAGCGGTGTGTTTTGTCGTCGACCGATAC 180
                                                                                  

consensus_5554#1      GAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGAAAGCGATTGTGGTGGAAACTTTGAAC 170
consensus_5554#2      -----------------------------------------------------TTTGAAC 7
consensus_5554#0      GGGT-TTGTGTTTGGTTGTTTGTAAGTTGTT--CACGGAATTAAAGTGTG---TTCGTGC 234
                                                                           ** *  *

consensus_5554#1      AGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGTTTGACCGGACAAACTCTGTC 230
consensus_5554#2      AGTGAAGAAGGTTCATCATTACGTGTACGCGAGCGACCGATTGACCGGACAAACTCTGTC 67
consensus_5554#0      AGCAAAAACGTGTCACCGTCGTGTGGTGAACAGCAGCAGGCCGGCCCAGCACGGCTTGTG 294
                      **  ** * *  *** * *   ***      ***  * *   * **   **     *** 

consensus_5554#1      GGTGAAC----------ACCGCGGGTGTACGTTTCGC-TGTGTCGCCGCCCCCCAATCTG 279
consensus_5554#2      GGTGAAC----------ACCGCGGGTGTACGTTTCGC-TGTGCCGCCGCCCCCCAATCTG 116
consensus_5554#0      TTTGATTTGCGGCTTTAACCGCACGATTACGTTGTGCGCGCGGAATTGATTGCGGGCCCG 354
                        ***            *****  *  ******  **  * *     *    *    * *

consensus_5554#1      TCCGTGAAAGG-AGTTGAACACTCTCCCTCCCAGAGCGGAGATTTCCAATTGCTCCGATA 338
consensus_5554#2      TCCGTGAAAGG-AGTTAACCACTCTCCCTCCCAGAGCGGAGATTTCCAATCGCTCCGATA 175
consensus_5554#0      TCGGTGTCGGTTGGCAAAAAAAAAACCAGTCTTCAATCGAGCTAATCGTTTGCACCGCTG 414
                      ** ***   *   *   *  *    **   *   *   *** *   *  * ** *** * 

consensus_5554#1      TATAGCGGAAGGTGCTGGTTTCGGAA----AAAGA----------------AAACAATAA 378
consensus_5554#2      TATAGCGGAAGGAGCTGGTTTCGGAA----AAAAC----------------AAA-----A 210
consensus_5554#0      GGTGTGAGACGGTGAGGAGTGGAGAGGAGTAAAGAGGGGGGAAACTTTATTAAGCAAACA 474
                        *    ** ** *  *  *   **     ***                  **      *

consensus_5554#1      CACAAAAAGGGT--GAAGGAAGGGAAGTGAAATAAGTTTCGTTATTAGGCAAGGCCAACA 436
consensus_5554#2      CACAAAAAGGGT--GTAGGAAGG-AAGTGAAATAA-TTTCGTTATTAGC---AGCAAGAA 263
consensus_5554#0      CACCAAACAGGACAGGAGAACGAGCAGCCGATGAAGAAAAACGATCAAGCTGAATAAACA 534
                      *** ***  **   * ** * *   **   *  **        ** *         *  *

consensus_5554#1      AGCANACATCTGCGGCAGCCGGAGNTGGGCATTTGCCGATTNGA--CCACTTGGTCNTGA 494
consensus_5554#2      CACACACAGCCGCGGC-GCGAGCGGCTTGCGTTTTCATGTCTGTGTTCGTTTGTAAGTGG 322
consensus_5554#0      AAAAACCTTCTCGAACGCTCCGGTTGGAACAACTGCGGCACAGT--CCAATGTAAAGGCA 592
                         *  *  *     *     *       *   * *      *    *  *         

consensus_5554#1      TGGATTCGGTATNTGGTAACGGTTGGTGCAACAGAGGCCAANGNCGCGAGGGAAAAACAA 554
consensus_5554#2      TGAAAAGCAACGGGGGAAAAAAACGGTGGAAAAGAG--CAAAAATTTAATCAAAAAATCG 380
consensus_5554#0      TAGACACAGAAAGAGAACGAGAGAAGACTGTCCGCGGCCAAAACTAAAGATACAAACTGA 652
                      *  *          *          *       * *  ***            ***    

consensus_5554#1      AAACGGGGNGGGAAAC--AANAAAGGGGA------------------------------- 581
consensus_5554#2      GAGCAAATTTTTTGTT--CTTTTGCTCTCTCTCTACAGTTTGTTGATTGATAAATTGATT 438
consensus_5554#0      ACGCGGGGAAAGTAGCTGAGCGACAGGAAAGTCGTCTCTCTATGGTTCCGTGCCGTAGGA 712
                         *                                                        

consensus_5554#1      ------------------------------------------------------------
consensus_5554#2      GATCGTTAGTGGTTAAGTGTTGGATAGGCGCCGCCAATCCGAGTGCGTGTGTGTGTTGAG 498
consensus_5554#0      AAGCGATTGTGG------------------------------------------------ 724
                                                                                  

consensus_5554#1      ---------------------------------
consensus_5554#2      TTTTTTTTTATGTGTGTGCAAGCGGCGCACGAT 531
consensus_5554#0      ---------------------------------